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A word-oriented approach to alignment validation.
- Published in:
- Bioinformatics, 2005, v. 21, n. 10, p. 2230
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- Article
Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere.
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- Scientific Reports, 2015, p. 8678, doi. 10.1038/srep08678
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- Article
Inferring phylogenies of evolving sequences without multiple sequence alignment.
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- Scientific Reports, 2014, p. 1, doi. 10.1038/srep06504
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- Article
A new species of Burkholderia isolated from sugarcane roots promotes plant growth.
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- Microbial Biotechnology, 2014, v. 7, n. 2, p. 142, doi. 10.1111/1751-7915.12105
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- Article
Complex-based analysis of dysregulated cellular processes in cancer.
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- BMC Systems Biology, 2014, v. 8, p. 1, doi. 10.1186/1752-0509-8-S4-S1
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- Article
Protein-protein interaction as a predictor of subcellular location.
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- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-28
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- Article
Microbial phylogenomics: Branching out.
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- Nature, 2003, v. 421, n. 6920, p. 217, doi. 10.1038/421217a
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- Article
Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-35620-z
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- Article
Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00262-8
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- Article
Evolutionary Dynamics of Small RNAs in 27 Escherichia coli and Shigella Genomes.
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- Genome Biology & Evolution, 2012, v. 4, n. 9, p. 330, doi. 10.1093/gbe/evs001
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- Article
Evolutionary Dynamics of Small RNAs in 27 Escherichia coli and Shigella Genomes.
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- Genome Biology & Evolution, 2012, v. 4, n. 3, p. 330, doi. 10.1093/gbe/evs001
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- Article
Lateral Transfer of Genes and Gene Fragments in Prokaryotes.
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- Genome Biology & Evolution, 2009, v. 1, p. 429, doi. 10.1093/gbe/evp044
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- Article
RMaNI: Regulatory Module Network Inference framework.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-14-S16-S14
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- Article
Clustering evolving proteins into homologous families.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-120
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- Publication type:
- Article
Automatic, context-specific generation of Gene Ontology slims.
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- BMC Bioinformatics, 2010, v. 11, p. 498, doi. 10.1186/1471-2105-11-498
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- Publication type:
- Article
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.
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- Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0098-3
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- Article
Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.
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- 2018
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- Correction Notice
Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.
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- 2018
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- Publication type:
- Correction Notice
Modeling the Attractor Landscape of Disease Progression: a Network-Based Approach.
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- Frontiers in Genetics, 2017, v. 8, p. 1, doi. 10.3389/fgene.2017.00048
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- Article
Identification of human haploinsufficient genes and their genomic proximity to segmental duplications.
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- European Journal of Human Genetics, 2008, v. 16, n. 11, p. 1350, doi. 10.1038/ejhg.2008.111
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- Article
Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer.
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- Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0086-1
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- Article
Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium.
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- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-00994-6
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- Article
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions.
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- BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00782-8
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- Article
Dynamics of Genome Rearrangement in Bacterial Populations.
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- PLoS Genetics, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pgen.1000128
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- Article
Alignment-free inference of hierarchical and reticulate phylogenomic relationships.
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- Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 426, doi. 10.1093/bib/bbx067
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- Article
Breast cancer classification: linking molecular mechanisms to disease prognosis.
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- Briefings in Bioinformatics, 2015, v. 16, n. 3, p. 461, doi. 10.1093/bib/bbu020
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- Article
Extracting reaction networks from databases–opening Pandora’s box.
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- Briefings in Bioinformatics, 2014, v. 15, n. 6, p. 973, doi. 10.1093/bib/bbt058
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- Article
Supervised, semi-supervised and unsupervised inference of gene regulatory networks.
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- Briefings in Bioinformatics, 2014, v. 15, n. 2, p. 195, doi. 10.1093/bib/bbt034
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- Article
Advanced computing for systems biology.
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- Briefings in Bioinformatics, 2006, v. 7, n. 4, p. 390, doi. 10.1093/bib/bbl033
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- Publication type:
- Article
Robust Inference of Genetic Exchange Communities from Microbial Genomes Using TF-IDF.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00021
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- Article
Personalised pathway analysis reveals association between DNA repair pathway dysregulation and chromosomal instability in sporadic breast cancer.
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- Molecular Oncology, 2016, v. 10, n. 1, p. 179, doi. 10.1016/j.molonc.2015.09.007
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- Article
The use of concept maps during knowledge elicitation in ontology development processes -- the nutrigenomics use case.
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- BMC Bioinformatics, 2006, v. 7, p. 1, doi. 10.1186/1471-2105-7-267
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- Publication type:
- Article
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
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- BMC Bioinformatics, 2005, v. 6, p. 87, doi. 10.1186/1471-2105-6-87
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- Article
A hybrid clustering approach to recognition of protein families in 114 microbial genomes.
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- BMC Bioinformatics, 2004, v. 5, p. 45, doi. 10.1186/1471-2105-5-45
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- Article
Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations.
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- PLoS Computational Biology, 2011, v. 7, n. 2, p. 1, doi. 10.1371/journal.pcbi.1001090
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- Article
Genome-Scale Computational Biology and Bioinformatics in Australia.
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- 2008
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- Publication type:
- Opinion
More bright ideas.
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- Nature, 1986, v. 322, n. 6077, p. 302, doi. 10.1038/322302c0
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- Publication type:
- Article
PHYLOGENETIC RELATIONSHIPS OF SPECIES OF UNCERTAIN TAXONOMIC POSITION WITHIN THE ACROCHAETIALES-PALMARIALES COMPLEX (RHODOPHYTA): INFERENCES FROM PHENOTYPIC AND 18S rDNA SEQUENCE DATA.
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- Journal of Phycology, 1995, v. 31, n. 4, p. 601, doi. 10.1111/j.1529-8817.1995.tb02556.x
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- Article
18S RIBOSOMAL DNA SEQUENCES INDICATE A MONOPHYLETIC ORIGIN OF CHAROPHYCEAE.
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- Journal of Phycology, 1994, v. 30, n. 3, p. 490, doi. 10.1111/j.0022-3646.1994.00490.x
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- Article
The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application.
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- Environmental Microbiology, 2016, v. 18, n. 5, p. 1338, doi. 10.1111/1462-2920.12925
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- Article
Comparative transcriptomic analyses of Chromera and Symbiodiniaceae.
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- Environmental Microbiology Reports, 2020, v. 12, n. 4, p. 435, doi. 10.1111/1758-2229.12859
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- Article
Transcriptome-Wide Prediction of miRNA Targets in Human and Mouse Using FASTH.
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- PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005745
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- Article
Are Protein Domains Modules of Lateral Genetic Transfer?
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- PLoS ONE, 2009, v. 4, n. 2, p. 1, doi. 10.1371/journal.pone.0004524
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- Article
Ancient origin of the biosynthesis of lignin precursors.
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- Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0052-y
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- Publication type:
- Article
Next-generation phylogenomics.
- Published in:
- Biology Direct, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1745-6150-8-3
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- Publication type:
- Article
Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse.
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- Proteomics, 2009, v. 9, n. 23, p. 5256, doi. 10.1002/pmic.200900262
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- Publication type:
- Article
The metastasis suppressor RARRES3 as an endogenous inhibitor of the immunoproteasome expression in breast cancer cells.
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- Scientific Reports, 2017, p. 39873, doi. 10.1038/srep39873
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- Publication type:
- Article
Crosstalk between sugarcane and a plant-growth promoting Burkholderia species.
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- Scientific Reports, 2016, p. 37389, doi. 10.1038/srep37389
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- Publication type:
- Article
Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer.
- Published in:
- Scientific Reports, 2016, p. 34000, doi. 10.1038/srep34000
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- Publication type:
- Article
A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF.
- Published in:
- Scientific Reports, 2016, p. 30308, doi. 10.1038/srep30308
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- Publication type:
- Article