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MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms.
- Published in:
- Bioinformatics, 2005, v. 21, n. 15, p. 3324, doi. 10.1093/bioinformatics/bti503
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- Publication type:
- Article
CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data.
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- Bioinformatics, 2005, v. 21, n. 15, p. 3308, doi. 10.1093/bioinformatics/bti500
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- Publication type:
- Article
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
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- Bioinformatics, 2003, v. 19, n. 5, p. 651, doi. 10.1093/bioinformatics/btg034
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- Publication type:
- Article
An open letter to the scientific journals.
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- Bioinformatics, 2002, v. 18, n. 11, p. 1409, doi. 10.1093/bioinformatics/18.11.1409
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- Publication type:
- Article
Genesis: cluster analysis of microarray data.
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- Bioinformatics, 2002, v. 18, n. 1, p. 207, doi. 10.1093/bioinformatics/18.1.207
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- Publication type:
- Article
Comparison and validation of genomic predictors for anticancer drug sensitivity.
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- Journal of the American Medical Informatics Association, 2013, v. 20, n. 4, p. 597, doi. 10.1136/amiajnl-2012-001442
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- Publication type:
- Article
Identification of Src transformation fingerprint in human colon cancer.
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- Oncogene, 2002, v. 21, n. 47, p. 7256, doi. 10.1038/sj.onc.1205900
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- Article
John Quackenbush talks about the clinical promise of genetic microarrays. Interviewed by Brian Vastag.
- Published in:
- 2003
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- Publication type:
- interview
Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators.
- Published in:
- BMC Systems Biology, 2015, v. 9, p. 1, doi. 10.1186/s12918-015-0228-1
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- Publication type:
- Article
Sexually-dimorphic targeting of functionally-related genes in COPD.
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 118, doi. 10.1186/s12918-014-0118-y
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- Publication type:
- Article
Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD.
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/1752-0509-8-78
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- Publication type:
- Article
Seeded Bayesian Networks: Constructing genetic networks from microarray data.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-57
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- Publication type:
- Article
Multistrain Genetic Comparisons Reveal CCR5 as a Receptor Involved in Airway Hyperresponsiveness.
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- American Journal of Respiratory Cell & Molecular Biology, 2006, v. 34, n. 6, p. 711, doi. 10.1165/rcmb.2005-0314OC
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- Publication type:
- Article
A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 332, doi. 10.1186/1471-2164-13-332
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- Publication type:
- Article
The limits of log-ratios.
- Published in:
- BMC Biotechnology, 2004, v. 4, p. 3, doi. 10.1186/1472-6750-4-3
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- Publication type:
- Article
Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation.
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- PLoS Pathogens, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.ppat.1006020
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- Publication type:
- Article
Time-series integrated 'omic' analyses to elucidate short-term stress-induced responses in plant liquid cultures.
- Published in:
- Biotechnology & Bioengineering, 2009, v. 102, n. 1, p. 264, doi. 10.1002/bit.22036
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- Publication type:
- Article
Top-down standards will not serve systems biology.
- Published in:
- 2006
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- Publication type:
- Letter
COMPUTATIONAL GENETICS: COMPUTATIONAL ANALYSIS OF MICROARRAY DATA.
- Published in:
- Nature Reviews Genetics, 2001, v. 2, n. 6, p. 418, doi. 10.1038/35076576
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- Publication type:
- Article
High-Throughput Sequencing in Respiratory, Critical Care, and Sleep Medicine Research. An Official American Thoracic Society Workshop Report.
- Published in:
- 2019
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- Publication type:
- journal article
Genome-Wide Sex and Gender Differences in Cancer.
- Published in:
- Frontiers in Oncology, 2020, v. 11, p. N.PAG, doi. 10.3389/fonc.2020.597788
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- Publication type:
- Article
Genetic control of gene expression at novel and established chronic obstructive pulmonary disease loci.
- Published in:
- Human Molecular Genetics, 2015, v. 24, n. 4, p. 1200, doi. 10.1093/hmg/ddu525
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- Publication type:
- Article
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 3, p. e15, doi. 10.1093/nar/gkac1157
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- Publication type:
- Article
Poly-ligand profiling differentiates trastuzumab-treated breast cancer patients according to their outcomes.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03631-z
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- Publication type:
- Article
Corrigendum: Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.
- Published in:
- Nature Communications, 2014, v. 5, n. 8, p. 4644, doi. 10.1038/ncomms5644
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- Publication type:
- Article
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.
- Published in:
- Nature Communications, 2014, v. 5, n. 6, p. 4006, doi. 10.1038/ncomms5006
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- Publication type:
- Article
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-285
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- Publication type:
- Article
A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution.
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- BMC Genomics, 2007, v. 8, p. 109, doi. 10.1186/1471-2164-8-109
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- Publication type:
- Article
A robust method for the amplification of RNA in the sense orientation.
- Published in:
- BMC Genomics, 2005, v. 6, p. 27, doi. 10.1186/1471-2164-6-27
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- Publication type:
- Article
A network model for angiogenesis in ovarian cancer.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0551-y
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- Publication type:
- Article
GCOD - GeneChip Oncology Database.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 46, doi. 10.1186/1471-2105-12-46
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- Publication type:
- Article
Genetic basis of murine antibacterial defense to streptococcal lung infection.
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- Immunogenetics, 2007, v. 59, n. 9, p. 713, doi. 10.1007/s00251-007-0242-6
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- Publication type:
- Article
A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers.
- Published in:
- Nature, 2011, v. 474, n. 7350, p. 230, doi. 10.1038/nature10155
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- Publication type:
- Article
Smooth quantile normalization.
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- 2018
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- Publication type:
- journal article
A three-gene model to robustly identify breast cancer molecular subtypes.
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- 2012
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- Publication type:
- journal article
A Three-Gene Model to Robustly Identify Breast Cancer Molecular Subtypes.
- Published in:
- JNCI: Journal of the National Cancer Institute, 2012, v. 104, n. 4, p. 311, doi. 10.1093/jnci/djr545
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- Publication type:
- Article
Osteopontin identified as lead marker of colon cancer progression, using pooled sample expression profiling.
- Published in:
- 2002
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- Publication type:
- journal article
Relevance of different prior knowledge sources for inferring gene interaction networks.
- Published in:
- Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00177
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- Publication type:
- Article
Relevance of different prior knowledge sources for inferring gene interaction networks.
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- Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00177
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- Publication type:
- Article
Environmental Influences Measured by Epigenetic Clock and Vulnerability Components at Birth Impact Clinical ASD Heterogeneity.
- Published in:
- Genes, 2021, v. 12, n. 9, p. 1433, doi. 10.3390/genes12091433
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- Publication type:
- Article
ESR1 gene amplification in breast cancer: a common phenomenon?
- Published in:
- 2008
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- Publication type:
- Letter
Use of a multi-virus array for the study of human viral and retroviral pathogens: gene expression studies and ChIP-chip analysis.
- Published in:
- Retrovirology, 2004, v. 1, p. 10, doi. 10.1186/1742-4690-1-10
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- Publication type:
- Article
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1847-x
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- Publication type:
- Article
Biomarker correlation network in colorectal carcinoma by tumor anatomic location.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1718-5
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- Publication type:
- Article
Variance of Gene Expression Identifies Altered Network Constraints in Neurological Disease.
- Published in:
- PLoS Genetics, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.pgen.1002207
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- Publication type:
- Article
Bipartite Community Structure of eQTLs.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005033
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- Publication type:
- Article
Expression Profiler: A suite of web-based tools for the analysis of microarray gene expression data.
- Published in:
- 2001
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- Publication type:
- Product Review
Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology.
- Published in:
- Frontiers in Oncology, 2016, p. 1, doi. 10.3389/fonc.2016.00071
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- Publication type:
- Article
Gene Targeting in Disease Networks.
- Published in:
- Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.649942
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- Publication type:
- Article
Ovarian reserve status in young women is associated with altered gene expression in membrana granulosa cells.
- Published in:
- Molecular Human Reproduction, 2012, v. 18, n. 7, p. 362, doi. 10.1093/molehr/gas008
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- Publication type:
- Article