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Detecting T cell receptors involved in immune responses from single repertoire snapshots.
Published in:
PLoS Biology, 2019, v. 17, n. 6, p. 1, doi. 10.1371/journal.pbio.3000314
By:
- Pogorelyy, Mikhail V.;
- Minervina, Anastasia A.;
- Shugay, Mikhail;
- Chudakov, Dmitriy M.;
- Lebedev, Yuri B.;
- Mora, Thierry;
- Walczak, Aleksandra M.
Publication type:
Article
Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.63502
By:
- Minervina, Anastasia A.;
- Komech, Ekaterina A.;
- Titov, Aleksei;
- Koraichi, Meriem Bensouda;
- Rosati, Elisa;
- Mamedov, Ilgar Z.;
- Franke, Andre;
- Efimov, Grigory A.;
- Chudakov, Dmitriy M.;
- Mora, Thierry;
- Walczak, Aleksandra M.;
- Lebedev, Yuri B.;
- Pogorelyy, Mikhail V.
Publication type:
Article
Inactivated tick-borne encephalitis vaccine elicits several overlapping waves of T cell response.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 01, doi. 10.3389/fimmu.2022.970285
By:
- Sycheva, Anastasiia L.;
- Komech, Ekaterina A.;
- Pogorelyy, Mikhail V.;
- Minervina, Anastasia A.;
- Urazbakhtin, Shamil Z.;
- Salnikova, Maria A.;
- Vorovitch, Mikhail F.;
- Kopantzev, Eugene P.;
- Zvyagin, Ivan V.;
- Komkov, Alexander Y.;
- Mamedov, Ilgar Z.;
- Lebedev, Yuri B.
Publication type:
Article
The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging.
Published in:
Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.01618
By:
- Egorov, Evgeny S.;
- Kasatskaya, Sofya A.;
- Zubov, Vasiliy N.;
- Izraelson, Mark;
- Nakonechnaya, Tatiana O.;
- Staroverov, Dmitriy B.;
- Angius, Andrea;
- Cucca, Francesco;
- Mamedov, Ilgar Z.;
- Rosati, Elisa;
- Franke, Andre;
- Shugay, Mikhail;
- Pogorelyy, Mikhail V.;
- Chudakov, Dmitriy M.;
- Britanova, Olga V.
Publication type:
Article
The Evidence for Increased L1 Activity in the Site of Human Adult Brain Neurogenesis.
Published in:
PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0117854
By:
- Kurnosov, Alexey A.;
- Ustyugova, Svetlana V.;
- Nazarov, Vadim I.;
- Minervina, Anastasia A.;
- Komkov, Alexander Yu.;
- Shugay, Mikhail;
- Pogorelyy, Mikhail V.;
- Khodosevich, Konstantin V.;
- Mamedov, Ilgar Z.;
- Lebedev, Yuri B.
Publication type:
Article
Immune fingerprinting through repertoire similarity.
Published in:
PLoS Genetics, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pgen.1009301
By:
- Dupic, Thomas;
- Bensouda Koraichi, Meriem;
- Minervina, Anastasia A.;
- Pogorelyy, Mikhail V.;
- Mora, Thierry;
- Walczak, Aleksandra M.
Publication type:
Article
A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies.
Published in:
Frontiers in Immunology, 2019, p. 1, doi. 10.3389/fimmu.2019.02159
By:
- Pogorelyy, Mikhail V.;
- Shugay, Mikhail
Publication type:
Article
tcR: an R package for T cell receptor repertoire advanced data analysis.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0613-1
By:
- Nazarov, Vadim I.;
- Pogorelyy, Mikhail V.;
- Komech, Ekaterina A.;
- Zvyagin, Ivan V.;
- Bolotin, Dmitry A.;
- Shugay, Mikhail;
- Chudakov, Dmitry M.;
- Lebedev, Yury B.;
- Mamedov, Ilgar Z.
Publication type:
Article
VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.
Published in:
PLoS Computational Biology, 2015, v. 11, n. 11, p. 1, doi. 10.1371/journal.pcbi.1004503
By:
- Shugay, Mikhail;
- Bagaev, Dmitriy V.;
- Turchaninova, Maria A.;
- Bolotin, Dmitriy A.;
- Britanova, Olga V.;
- Putintseva, Ekaterina V.;
- Pogorelyy, Mikhail V.;
- Nazarov, Vadim I.;
- Zvyagin, Ivan V.;
- Kirgizova, Vitalina I.;
- Kirgizov, Kirill I.;
- Skorobogatova, Elena V.;
- Chudakov, Dmitriy M.
Publication type:
Article
CD8<sup>+</sup> T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.
Published in:
Rheumatology, 2018, v. 57, n. 6, p. 1097, doi. 10.1093/rheumatology/kex517
By:
- Komech, Ekaterina A;
- Pogorelyy, Mikhail V;
- Egorov, Evgeniy S;
- Britanova, Olga V;
- Rebrikov, Denis V;
- Bochkova, Anna G;
- Shmidt, Evgeniya I;
- Shostak, Nadejda A;
- Shugay, Mikhail;
- Lukyanov, Sergey
Publication type:
Article
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires.
Published in:
PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005572
By:
- Pogorelyy, Mikhail V.;
- Elhanati, Yuval;
- Marcou, Quentin;
- Sycheva, Anastasiia L.;
- Komech, Ekaterina A.;
- Nazarov, Vadim I.;
- Britanova, Olga V.;
- Chudakov, Dmitriy M.;
- Mamedov, Ilgar Z.;
- Lebedev, Yury B.;
- Mora, Thierry;
- Walczak, Aleksandra M.
Publication type:
Article
Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases.
Published in:
Journal of Crohn's & Colitis, 2020, v. 14, n. 6, p. 778, doi. 10.1093/ecco-jcc/jjz179
By:
- Rosati, Elisa;
- Pogorelyy, Mikhail V;
- Dowds, C Marie;
- Moller, Frederik T;
- Sorensen, Signe B;
- Lebedev, Yuri B;
- Frey, Norbert;
- Schreiber, Stefan;
- Spehlmann, Martina E;
- Andersen, Vibeke;
- Mamedov, Ilgar Z;
- Franke, Andre
Publication type:
Article
Corrigendum to: Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases.
Published in:
Journal of Crohn's & Colitis, 2020, v. 14, n. 5, p. 720, doi. 10.1093/ecco-jcc/jjz210
By:
- Rosati, Elisa;
- Pogorelyy, Mikhail V;
- Dowds, C Marie;
- Moller, Frederik T;
- Sorensen, Signe B;
- Lebedev, Yuri B;
- Frey, Norbert;
- Schreiber, Stefan;
- Spehlmann, Martina E;
- Andersen, Vibeke;
- Mamedov, Ilgar Z;
- Franke, Andre
Publication type:
Article
Huge overlap of individual TCR beta repertoires.
Published in:
Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00466
By:
- Shugay, Mikhail;
- Bolotin, Dmitriy A.;
- Putintseva, Ekaterina V.;
- Pogorelyy, Mikhail V.;
- Mamedov, Ilgar Z.;
- Chudakov, Dmitriy M.
Publication type:
Article
Mother and child T cell receptor repertoires: deep profiling study.
Published in:
Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00463
By:
- Putintseva, Ekaterina V.;
- Britanova, Olga V.;
- Staroverov, Dmitriy B.;
- Merzlyak, Ekaterina M.;
- Turchaninova, Maria A.;
- Shugay, Mikhail;
- Bolotin, Dmitriy A.;
- Pogorelyy, Mikhail V.;
- Mamedov, Ilgar Z.;
- Bobrynina, Vlasta;
- Maschan, Mikhail;
- Lebedev, Yuri B.;
- Chudakov, Dmitriy M.
Publication type:
Article
Exploring the pre-immune landscape of antigen-specific T cells.
Published in:
Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0577-7
By:
- Pogorelyy, Mikhail V.;
- Fedorova, Alla D.;
- Mclaren, James E.;
- Ladell, Kristin;
- Bagaev, Dmitri V.;
- Eliseev, Alexey V.;
- Mikelov, Artem I.;
- Koneva, Anna E.;
- Zvyagin, Ivan V.;
- Price, David A.;
- Chudakov, Dmitry M.;
- Shugay, Mikhail
Publication type:
Article

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