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Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease.
Published in:
Human Genomics, 2018, v. 12, p. 1, doi. 10.1186/s40246-018-0132-z
By:
- Morrow, Jarrett D.;
- Cho, Michael H.;
- Platig, John;
- Zhou, Xiaobo;
- DeMeo, Dawn L.;
- Qiu, Weiliang;
- Celli, Bartholome;
- Marchetti, Nathaniel;
- Criner, Gerard J.;
- Bueno, Raphael;
- Washko, George R.;
- Glass, Kimberly;
- Quackenbush, John;
- Silverman, Edwin K.;
- Hersh, Craig P.
Publication type:
Article
Gene Targeting in Disease Networks.
Published in:
Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.649942
By:
- Weighill, Deborah;
- Ben Guebila, Marouen;
- Glass, Kimberly;
- Platig, John;
- Yeh, Jen Jen;
- Quackenbush, John
Publication type:
Article
Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function.
Published in:
2020
By:
- Fagny, Maud;
- Platig, John;
- Kuijjer, Marieke Lydia;
- Lin, Xihong;
- Quackenbush, John
Publication type:
journal article
Regulatory network changes between cell lines and their tissues of origin.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4111-x
By:
- Lopes-Ramos, Camila M.;
- Paulson, Joseph N.;
- Cho-Yi Chen;
- Kuijjer, Marieke L.;
- Fagny, Maud;
- Platig, John;
- Sonawane, Abhijeet R.;
- DeMeo, Dawn L.;
- Quackenbush, John;
- Glass, Kimberly
Publication type:
Article
Bipartite Community Structure of eQTLs.
Published in:
PLoS Computational Biology, 2016, v. 12, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005033
By:
- Platig, John;
- Castaldi, Peter J.;
- DeMeo, Dawn;
- Quackenbush, John
Publication type:
Article
Thermodynamic measures of cancer: Gibbs free energy and entropy of protein-protein interactions.
Published in:
Journal of Biological Physics, 2016, v. 42, n. 3, p. 339, doi. 10.1007/s10867-016-9410-y
By:
- Rietman, Edward;
- Platig, John;
- Tuszynski, Jack;
- Lakka Klement, Giannoula
Publication type:
Article
GRAND: a database of gene regulatory network models across human conditions.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D610, doi. 10.1093/nar/gkab778
By:
- Ben Guebila, Marouen;
- Lopes-Ramos, Camila M;
- Weighill, Deborah;
- Sonawane, Abhijeet Rajendra;
- Burkholz, Rebekka;
- Shamsaei, Behrouz;
- Platig, John;
- Glass, Kimberly;
- Kuijjer, Marieke L;
- Quackenbush, John
Publication type:
Article
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1847-x
By:
- Paulson, Joseph N.;
- Cho-Yi Chen;
- Lopes-Ramos, Camila M.;
- Kuijjer, Marieke L.;
- Platig, John;
- Sonawane, Abhijeet R.;
- Fagny, Maud;
- Glass, Kimberly;
- Quackenbush, John
Publication type:
Article
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.
Published in:
PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011079
By:
- Gentili, Michele;
- Glass, Kimberly;
- Maiorino, Enrico;
- Hobbs, Brian D.;
- Xu, Zhonghui;
- Castaldi, Peter J.;
- Cho, Michael H.;
- Hersh, Craig P.;
- Qiao, Dandi;
- Morrow, Jarrett D.;
- Carey, Vincent J.;
- Platig, John;
- Silverman, Edwin K.
Publication type:
Article
Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility.
Published in:
PLoS Pathogens, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.ppat.1008452
By:
- Zeng, Jumei;
- Platig, John;
- Cheng, Tan-Yun;
- Ahmed, Saima;
- Skaf, Yara;
- Potluri, Lakshmi-Prasad;
- Schwartz, Daniel;
- Steen, Hanno;
- Moody, D. Branch;
- Husson, Robert N.
Publication type:
Article
Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease.
Published in:
PLoS Genetics, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pgen.1009912
By:
- Lackey, Lela;
- Coria, Aaztli;
- Ghosh, Auyon J.;
- Grayeski, Phil;
- Hatfield, Luke;
- Shankar, Vijay;
- Platig, John;
- Xu, Zhonghui;
- Ramos, Silvia B. V.;
- Silverman, Edwin K.;
- Ortega, Victor E.;
- Cho, Michael H.;
- Hersh, Craig P.;
- Hobbs, Brian D.;
- Castaldi, Peter;
- Laederach, Alain
Publication type:
Article
Multi-omic regulatory networks capture downstream effects of kinase inhibition in Mycobacterium tuberculosis.
Published in:
NPJ Systems Biology & Applications, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41540-020-00164-4
By:
- Young, Albert T.;
- Carette, Xavier;
- Helmel, Michaela;
- Steen, Hanno;
- Husson, Robert N.;
- Quackenbush, John;
- Platig, John
Publication type:
Article

Found: 12