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Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27669-8
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- Publication type:
- Article
An extended motif in the SARS-CoV-2 spike modulates binding and release of host coatomer in retrograde trafficking.
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- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03063-y
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- Publication type:
- Article
Mucosal nanobody IgA as inhalable and affordable prophylactic and therapeutic treatment against SARS-CoV-2 and emerging variants.
- Published in:
- Frontiers in Immunology, 2022, v. 12, p. 1, doi. 10.3389/fimmu.2022.995412
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- Publication type:
- Article
Structural Features of Antibody-Peptide Recognition.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.910367
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- Publication type:
- Article
TCRmodel: high resolution modeling of T cell receptors from sequence.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W396, doi. 10.1093/nar/gky432
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- Publication type:
- Article
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D171, doi. 10.1093/nar/gks1221
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- Publication type:
- Article
Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27669-8
- By:
- Publication type:
- Article
The Missing Heritability in T1D and Potential New Targets for Prevention.
- Published in:
- Journal of Diabetes Research, 2013, p. 1, doi. 10.1155/2013/737485
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- Publication type:
- Article
Evaluating template-based and template-free protein–protein complex structure prediction.
- Published in:
- Briefings in Bioinformatics, 2014, v. 15, n. 2, p. 169, doi. 10.1093/bib/bbt047
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- Publication type:
- Article
Mapping Determinants of Virus Neutralization and Viral Escape for Rational Design of a Hepatitis C Virus Vaccine.
- Published in:
- Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.01194
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- Publication type:
- Article
Computational Modeling of Hepatitis C Virus Envelope Glycoprotein Structure and Recognition.
- Published in:
- Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.01117
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- Publication type:
- Article
A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-44076-3
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- Publication type:
- Article
Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39659-z
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- Publication type:
- Article
High-Throughput Sequencing Analysis of Post-Liver Transplantation HCV E2 Glycoprotein Evolution in the Presence and Absence of Neutralizing Monoclonal Antibody.
- Published in:
- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100325
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- Publication type:
- Article
Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library.
- Published in:
- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024657
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- Publication type:
- Article
Performance of ZDOCK in CAPRI rounds 20-26.
- Published in:
- Proteins, 2013, v. 81, n. 12, p. 2175, doi. 10.1002/prot.24432
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- Publication type:
- Article
Performance of ZDOCK and ZRANK in CAPRI rounds 13-19.
- Published in:
- Proteins, 2010, v. 78, n. 15, p. 3104, doi. 10.1002/prot.22764
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- Publication type:
- Article
Molecular Determinants of Filament Capping Proteins Required for the Formation of Functional Flagella in Gram-Negative Bacteria.
- Published in:
- Biomolecules (2218-273X), 2021, v. 11, n. 10, p. 1397, doi. 10.3390/biom11101397
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- Publication type:
- Article
Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-319
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- Publication type:
- Article
Broadly neutralizing antibodies from an individual that naturally cleared multiple hepatitis C virus infections uncover molecular determinants for E2 targeting and vaccine design.
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- PLoS Pathogens, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.ppat.1007772
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- Publication type:
- Article
Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants.
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- PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009380
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- Publication type:
- Article
Structural basis for T cell recognition of cancer neoantigens and implications for predicting neoepitope immunogenicity.
- Published in:
- Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1303304
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- Publication type:
- Article
Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor.
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- PLoS Computational Biology, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pcbi.1003478
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- Publication type:
- Article
Hepatitis C Virus E1E2 Structure, Diversity, and Implications for Vaccine Development.
- Published in:
- Viruses (1999-4915), 2024, v. 16, n. 5, p. 803, doi. 10.3390/v16050803
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- Publication type:
- Article
Structural and Biophysical Characterization of the HCV E1E2 Heterodimer for Vaccine Development.
- Published in:
- Viruses (1999-4915), 2021, v. 13, n. 6, p. 1027, doi. 10.3390/v13061027
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- Publication type:
- Article
Structure-Based and Rational Design of a Hepatitis C Virus Vaccine.
- Published in:
- Viruses (1999-4915), 2021, v. 13, n. 5, p. 837, doi. 10.3390/v13050837
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- Publication type:
- Article
Anti-CfaE nanobodies provide broad cross-protection against major pathogenic enterotoxigenic Escherichia coli strains, with implications for vaccine design.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-81895-0
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- Publication type:
- Article
Designing a B Cell-Based Vaccine against a Highly Variable Hepatitis C Virus.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2017.02692
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- Publication type:
- Article
A generalized framework for computational design and mutational scanning of T-cell receptor binding interfaces.
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- PEDS: Protein Engineering, Design & Selection, 2016, v. 29, n. 12, p. 595, doi. 10.1093/protein/gzw050
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- Publication type:
- Article
Proscan: a structure-based proline design web server.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. W1, p. W280, doi. 10.1093/nar/gkae408
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- Publication type:
- Article
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W569, doi. 10.1093/nar/gkad356
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- Publication type:
- Article
CoV3D: a database of high resolution coronavirus protein structures.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D282, doi. 10.1093/nar/gkaa731
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- Publication type:
- Article
Exploring the potential of structure-based deep learning approaches for T cell receptor design.
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- PLoS Computational Biology, 2024, v. 20, n. 9, p. 1, doi. 10.1371/journal.pcbi.1012489
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- Publication type:
- Article
T Cell Receptor Genotype and Ubash3a Determine Susceptibility to Rat Autoimmune Diabetes.
- Published in:
- Genes, 2021, v. 13, n. 6, p. 852, doi. 10.3390/genes12060852
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- Publication type:
- Article
A flexible docking approach for prediction of T cell receptor-peptide-MHC complexes.
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- Protein Science: A Publication of the Protein Society, 2013, v. 22, n. 1, p. 35, doi. 10.1002/pro.2181
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- Publication type:
- Article
Prediction of protein-protein binding free energies.
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- Protein Science: A Publication of the Protein Society, 2012, v. 21, n. 3, p. 396, doi. 10.1002/pro.2027
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- Publication type:
- Article
Geometrical characterization of T cell receptor binding modes reveals class‐specific binding to maximize access to antigen.
- Published in:
- Proteins, 2020, v. 88, n. 3, p. 503, doi. 10.1002/prot.25829
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- Publication type:
- Article
ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes.
- Published in:
- Proteins, 2017, v. 85, n. 5, p. 908, doi. 10.1002/prot.25260
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- Publication type:
- Article
Performance of ZDOCK and IRAD in CAPRI rounds 28-34.
- Published in:
- Proteins, 2017, v. 85, n. 3, p. 408, doi. 10.1002/prot.25186
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- Publication type:
- Article
High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.
- Published in:
- Bioinformatics, 2020, v. 36, n. 22/23, p. 5377, doi. 10.1093/bioinformatics/btaa1050
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- Publication type:
- Article
TCR3d: The T cell receptor structural repertoire database.
- Published in:
- Bioinformatics, 2019, v. 35, n. 24, p. 5323, doi. 10.1093/bioinformatics/btz517
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- Publication type:
- Article
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers.
- Published in:
- 2014
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- Publication type:
- Product Review
Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16755-y
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- Publication type:
- Article
Evaluation of AlphaFold antibody–antigen modeling with implications for improving predictive accuracy.
- Published in:
- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 1, p. 1, doi. 10.1002/pro.4865
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- Publication type:
- Article
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants.
- Published in:
- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 8, p. 1, doi. 10.1002/pro.4379
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- Publication type:
- Article