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High-quality metagenome assembly from long accurate reads with metaMDBG.
- Published in:
- Nature Biotechnology, 2024, v. 42, n. 9, p. 1378, doi. 10.1038/s41587-023-01983-6
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- Publication type:
- Article
ModDotPlot—rapid and interactive visualization of tandem repeats.
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- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae493
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- Publication type:
- Article
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
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- Genome Biology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/gb-2013-14-1-r2
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- Publication type:
- Article
Irreconcilable diff erences: divorcing geographic mutation and recombination rates within a global MRSA clone
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- Genome Biology, 2012, v. 13, n. 12, p. 181, doi. 10.1186/gb-2012-13-12-181
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- Publication type:
- Article
Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity.
- Published in:
- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-291
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- Publication type:
- Article
Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity.
- Published in:
- BMC Genomics, 2011, v. 12, n. 1, p. 291, doi. 10.1186/1471-2164-12-291
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- Publication type:
- Article
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography.
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- Molecular Biology & Evolution, 2024, v. 41, n. 3, p. 1, doi. 10.1093/molbev/msae036
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- Article
Molecular Epidemiologic Investigation of an Anthrax Outbreak among Heroin Users, Europe.
- Published in:
- Emerging Infectious Diseases, 2012, v. 18, n. 8, p. 1307, doi. 10.3201/eid1808.111343
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- Article
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts.
- Published in:
- Nature Communications, 2016, v. 7, n. 6, p. 11757, doi. 10.1038/ncomms11757
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- Publication type:
- Article
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02134-9
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- Publication type:
- Article
Mash Screen: high-throughput sequence containment estimation for genome discovery.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1841-x
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- Publication type:
- Article
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1760-x
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- Publication type:
- Article
Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential.
- Published in:
- Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-019-0708-9
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- Publication type:
- Article
Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification.
- Published in:
- BMC Genomics, 2010, v. 11, p. 500, doi. 10.1186/1471-2164-11-500
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- Publication type:
- Article
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99<sup>A</sup>.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-204
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- Publication type:
- Article
Automated ensemble assembly and validation of microbial genomes.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-126
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- Publication type:
- Article
The whale shark genome reveals patterns of vertebrate gene family evolution.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.65394
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- Article
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.
- Published in:
- BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-019-0728-3
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- Publication type:
- Article
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies.
- Published in:
- Briefings in Bioinformatics, 2013, v. 14, n. 2, p. 213, doi. 10.1093/bib/bbr074
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- Publication type:
- Article
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07641-9
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- Publication type:
- Article
Corrigendum: Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
- Published in:
- Nature Biotechnology, 2015, v. 33, n. 10, p. 1109, doi. 10.1038/nbt1015-1109c
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- Publication type:
- Article
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
- Published in:
- Nature Biotechnology, 2015, v. 33, n. 6, p. 623, doi. 10.1038/nbt.3238
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- Publication type:
- Article
Hybrid error correction and de novo assembly of single-molecule sequencing reads.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 7, p. 693, doi. 10.1038/nbt.2280
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- Publication type:
- Article
New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes.
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- BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6364-z
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- Publication type:
- Article
Comprehensive DNA Signature Discovery and Validation.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 5, p. e98, doi. 10.1371/journal.pcbi.0030098
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- Publication type:
- Article
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae311
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- Publication type:
- Article
Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation.
- Published in:
- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad512
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- Publication type:
- Article
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps.
- Published in:
- Bioinformatics, 2022, v. 38, n. 7, p. 2049, doi. 10.1093/bioinformatics/btac018
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- Publication type:
- Article
Weighted minimizer sampling improves long read mapping.
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- Bioinformatics, 2020, v. 36, p. i111, doi. 10.1093/bioinformatics/btaa435
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- Publication type:
- Article
HLA*LA—HLA typing from linearly projected graph alignments.
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- Bioinformatics, 2019, v. 35, n. 21, p. 4394, doi. 10.1093/bioinformatics/btz235
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- Publication type:
- Article
A fast adaptive algorithm for computing whole-genome homology maps.
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- Bioinformatics, 2018, v. 34, n. 17, p. i748, doi. 10.1093/bioinformatics/bty597
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- Publication type:
- Article
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20536-y
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- Publication type:
- Article
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification.
- Published in:
- 2018
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- Publication type:
- Letter
Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru.
- Published in:
- PLoS Neglected Tropical Diseases, 2016, v. 10, n. 4, p. 1, doi. 10.1371/journal.pntd.0004440
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- Article
The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-82565-x
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- Publication type:
- Article
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.
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- GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa029
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- Article
chromosome-scale assembly of the major African malaria vector Anopheles funestus.
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- GigaScience, 2019, v. 8, n. 6, p. 1, doi. 10.1093/gigascience/giz063
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- Publication type:
- Article
False gene and chromosome losses in genome assemblies caused by GC content variation and repeats.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02765-0
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- Publication type:
- Article
Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-01152-4
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- Article
Insignia: a DNA signature search web server for diagnostic assay development.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W229, doi. 10.1093/nar/gkp286
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- Publication type:
- Article
Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16037-7
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- Publication type:
- Article
Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15848-y
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- Publication type:
- Article
Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10934-2
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- Publication type:
- Article
Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pcbi.1007273
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- Publication type:
- Article
Mash: fast genome and metagenome distance estimation using MinHash.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0997-x
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- Publication type:
- Article
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
- Published in:
- Genome Biology, 2014, v. 15, n. 10, p. 524, doi. 10.1186/s13059-014-0524-x
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- Publication type:
- Article
Reducing assembly complexity of microbial genomes with single-molecule sequencing.
- Published in:
- Genome Biology, 2013, v. 14, n. 9, p. 1, doi. 10.1186/gb-2013-14-9-r101
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- Publication type:
- Article
Telomere-to-telomere assembly of diploid chromosomes with Verkko.
- Published in:
- Nature Biotechnology, 2023, v. 41, n. 10, p. 1474, doi. 10.1038/s41587-023-01662-6
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- Publication type:
- Article
Author Correction: A robust benchmark for detection of germline large deletions and insertions.
- Published in:
- 2020
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- Publication type:
- Correction Notice
A robust benchmark for detection of germline large deletions and insertions.
- Published in:
- Nature Biotechnology, 2020, v. 38, n. 11, p. 1347, doi. 10.1038/s41587-020-0538-8
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- Publication type:
- Article