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SpLitteR: diploid genome assembly using TELL-Seq linked-reads and assembly graphs.
- Published in:
- PeerJ, 2024, p. 1, doi. 10.7717/peerj.18050
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- Article
Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps.
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- Human Genomics, 2003, v. 1, n. 1, p. 30, doi. 10.1186/1479-7364-1-1-30
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- Article
Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23502-4
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- Article
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads.
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- Nature Biotechnology, 2022, v. 40, n. 7, p. 1075, doi. 10.1038/s41587-022-01220-6
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- Article
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
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- Nature Biotechnology, 2022, v. 40, n. 5, p. 711, doi. 10.1038/s41587-021-01130-z
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- Publication type:
- Article
Automated assembly of centromeres from ultra-long error-prone reads.
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- Nature Biotechnology, 2020, v. 38, n. 11, p. 1309, doi. 10.1038/s41587-020-0582-4
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- Article
Assembly of long, error-prone reads using repeat graphs.
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- Nature Biotechnology, 2019, v. 37, n. 5, p. 540, doi. 10.1038/s41587-019-0072-8
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- Article
How bioinformatics and open data can boost basic science in countries and universities with limited resources.
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- Nature Biotechnology, 2019, v. 37, n. 3, p. 324, doi. 10.1038/s41587-019-0053-y
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- Publication type:
- Article
How to apply de Bruijn graphs to genome assembly.
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- Nature Biotechnology, 2011, v. 29, n. 11, p. 987, doi. 10.1038/nbt.2023
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- Article
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.
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- Nature Biotechnology, 2011, v. 29, n. 10, p. 915, doi. 10.1038/nbt.1966
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- Article
Automated de novo protein sequencing of monoclonal antibodies.
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- Nature Biotechnology, 2008, v. 26, n. 12, p. 1336, doi. 10.1038/nbt1208-1336
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- Publication type:
- Article
Identification of post-translational modifications by blind search of mass spectra.
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- Nature Biotechnology, 2005, v. 23, n. 12, p. 1562, doi. 10.1038/nbt1168
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- Publication type:
- Article
Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.
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- Nature Genetics, 2007, v. 39, n. 11, p. 1361, doi. 10.1038/ng.2007.9
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- Article
Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.
- Published in:
- Nature Methods, 2011, v. 8, n. 7, p. 587, doi. 10.1038/nmeth.1609
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- Publication type:
- Article
Dereplication and de novo sequencing of nonribosomal peptides.
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- Nature Methods, 2009, v. 6, n. 8, p. 596, doi. 10.1038/nmeth.1350
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- Article
CentromereArchitect: inference and analysis of the architecture of centromeres.
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- Bioinformatics, 2021, v. 37, p. i196, doi. 10.1093/bioinformatics/btab265
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- Publication type:
- Article
Neuropeptidomic Components Generated by Proteomic Functions in Secretory Vesicles for Cell-Cell Communication.
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- AAPS Journal, 2010, v. 12, n. 4, p. 635, doi. 10.1208/s12248-010-9223-z
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- Publication type:
- Article
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02566-x
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- Publication type:
- Article
Characterization of Cyanobacterial Hydrocarbon Composition and Distribution of Biosynthetic Pathways.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0085140
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- Article
Single Cell Genome Amplification Accelerates Identification of the Apratoxin Biosynthetic Pathway from a Complex Microbial Assemblage.
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- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018565
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- Article
Proteogenomics.
- Published in:
- Proteomics, 2014, v. 14, n. 23/24, p. 2631, doi. 10.1002/pmic.201470173
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- Publication type:
- Article
Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry.
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- Proteomics, 2014, v. 14, n. 10, p. 1211, doi. 10.1002/pmic.201300378
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- Article
Sequencing cyclic peptides by multistage mass spectrometry.
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- Proteomics, 2011, v. 11, n. 18, p. 3642, doi. 10.1002/pmic.201000697
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- Publication type:
- Article
Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry.
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- Proteomics, 2010, v. 10, n. 15, p. 2833, doi. 10.1002/pmic.200900821
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- Publication type:
- Article
Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
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- Proteomics, 2007, v. 7, n. 14, p. 2318, doi. 10.1002/pmic.200700003
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- Publication type:
- Article
Application of de novo sequencing tools to study abiogenic peptide formations by tandem mass spectrometry. The case of homo-peptides from glutamic acid complicated by substitutions of hydrogen by sodium or potassium atoms.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2014, v. 28, n. 1, p. 33, doi. 10.1002/rcm.6757
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- Publication type:
- Article
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.
- Published in:
- Marine Drugs, 2021, v. 19, n. 1, p. 20, doi. 10.3390/md19010020
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- Publication type:
- Article
Representing and comparing protein structures as paths in three-dimensional space.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 460, doi. 10.1186/1471-2105-7-460
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- Publication type:
- Article
The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
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- Nucleic Acids Research, 2004, v. 32, n. 13, p. 3977, doi. 10.1093/nar/gkh731
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- Article
MORPH-PRO: a novel algorithm and web server for protein morphing.
- Published in:
- Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-19
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- Publication type:
- Article
Are There Rearrangement Hotspots in the Human Genome?
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- PLoS Computational Biology, 2007, v. 3, n. 11, p. e209, doi. 10.1371/journal.pcbi.0030209
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- Article
The Fragile Breakage versus Random Breakage Models of Chromosome Evolution.
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- PLoS Computational Biology, 2006, v. 2, n. 2, p. 0100, doi. 10.1371/journal.pcbi.0020014
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- Article
How many signal peptides are there in bacteria?
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- Environmental Microbiology, 2013, v. 15, n. 4, p. 983, doi. 10.1111/1462-2920.12105
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- Article
MS-GFþ makes progress towards a universal database search tool for proteomics.
- Published in:
- Nature Communications, 2014, v. 5, n. 10, p. 5277, doi. 10.1038/ncomms6277
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- Publication type:
- Article
Single-molecule protein identification by sub-nanopore sensors.
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- PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005356
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- Publication type:
- Article
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.
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- Bioinformatics, 2008, v. 24, n. 13, p. i416, doi. 10.1093/bioinformatics/btn184
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- Article
De novo identification of repeat families in large genomes.
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- Bioinformatics, 2005, v. 21, p. i351, doi. 10.1093/bioinformatics/bti1018
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- Article
De novo identification of repeat families in large genomes.
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- Bioinformatics, 2005, v. 21, n. 1, p. i351
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- Publication type:
- Article
Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians.
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- Bioinformatics, 2004, v. 20, n. 14, p. 2159, doi. 10.1093/bioinformatics/bth217
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- Article
Fragment assembly with short reads.
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- Bioinformatics, 2004, v. 20, n. 13, p. 2067, doi. 10.1093/bioinformatics/bth205
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- Publication type:
- Article
Reconstructing tumor amplisomes.
- Published in:
- Bioinformatics, 2004, v. 20, n. suppl_1, p. i265, doi. 10.1093/bioinformatics/bth931
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- Article
Reconstructing tumor amplisomes.
- Published in:
- Bioinformatics, 2004, v. 20, p. i265, doi. 10.1093/bioinformatics/bth931
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- Publication type:
- Article
Finding composite regulatory patterns in DNA sequences.
- Published in:
- Bioinformatics, 2002, v. 18, p. S354, doi. 10.1093/bioinformatics/18.suppl_1.S354
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- Publication type:
- Article
Splicing graphs and EST assembly problem.
- Published in:
- Bioinformatics, 2002, v. 18, p. S181, doi. 10.1093/bioinformatics/18.suppl_1.S181
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- Publication type:
- Article
Fragment assembly with double-barreled data.
- Published in:
- Bioinformatics, 2001, v. 17, p. 225, doi. 10.1093/bioinformatics/17.suppl_1.s225
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- Publication type:
- Article
A new approach to sequence comparison: normalized sequence alignment.
- Published in:
- Bioinformatics, 2001, v. 17, n. 4, p. 327, doi. 10.1093/bioinformatics/17.4.327
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- Publication type:
- Article
Algorithms and software for support of gene identification experiments.
- Published in:
- Bioinformatics, 1998, v. 14, n. 1, p. 14, doi. 10.1093/bioinformatics/14.1.14
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- Publication type:
- Article
Dereplication of microbial metabolites through database search of mass spectra.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06082-8
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- Publication type:
- Article
What is the difference between the breakpoint graph and the de Bruijn graph?
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S6-S6
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- Publication type:
- Article