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Comparison of Microbial Communities Isolated from Feces of Asymptomatic Salmonella-Shedding and Non-Salmonella Shedding Dairy Cows.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00691
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- Article
TreeToReads - a pipeline for simulating raw reads from phylogenies.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1592-1
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- Article
TEMPO AND MODE OF MATING SYSTEM EVOLUTION BETWEEN INCIPIENT CLARKIA SPECIES.
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- Evolution, 2012, v. 66, n. 4, p. 1210, doi. 10.1111/j.1558-5646.2011.01521.x
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- Article
Using Evolutionary Analyses to Refine Whole-Genome Sequence Match Criteria.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.797997
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- Article
Phylogeography of speciation: allopatric divergence and secondary contact between outcrossing and selfing Clarkia.
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- Molecular Ecology, 2012, v. 21, n. 18, p. 4578, doi. 10.1111/j.1365-294X.2012.05715.x
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- Article
The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.
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- PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0128407
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- Article
Co-Enriching Microflora Associated with Culture Based Methods to Detect <i>Salmonella</i> from Tomato Phyllosphere.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0073079
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- Article
Phylogenetics and Differentiation of <i>Salmonella</i> Newport Lineages by Whole Genome Sequencing.
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- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055687
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- Article
On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004.
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- PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0055254
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- Article
Elucidating the evolutionary history and expression patterns of nucleoside phosphorylase paralogs (vegetative storage proteins) in Populus and the plant kingdom.
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- BMC Plant Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2229-13-118
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- Article
A longitudinal study to examine the influence of farming practices and environmental factors on pathogen prevalence using structural equation modeling.
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- Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1141043
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- Article
The impact of systemic and copper pesticide applications on the phyllosphere microflora of tomatoes.
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- Journal of the Science of Food & Agriculture, 2015, v. 95, n. 5, p. 1116, doi. 10.1002/jsfa.7010
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- Article
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain.
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- PLoS ONE, 2021, v. 16, n. 11, p. 1, doi. 10.1371/journal.pone.0259471
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- Article
City sanitation and socioeconomics predict rat zoonotic infection across diverse neighbourhoods.
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- Zoonoses & Public Health, 2020, v. 67, n. 6, p. 673, doi. 10.1111/zph.12748
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- Article
Mating system divergence affects the distribution of sequence diversity within and among populations of recently diverged subspecies of Clarkia xantiana (Onagraceae).
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- American Journal of Botany, 2016, v. 103, n. 1, p. 99, doi. 10.3732/ajb.1500147
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- Article
A SEQUENTIAL APPROACH USING GENETIC AND MORPHOLOGICAL ANALYSES TO TEST SPECIES STATUS; THE CASE OF UNITED STATES FEDERALLY ENDANGERED AGALINIS ACUTA (OROBANCHACEAE).
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- American Journal of Botany, 2011, v. 98, n. 5, p. 859, doi. 10.3732/ajb.1000267
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- Article
AN EVALUATION OF CANDIDATE PLANT DNA BARCODES AND ASSIGNMENT METHODS IN DIAGNOSING 29 SPECIES IN THE GENUS AGALINIS (OROBANCHACEAE).
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- American Journal of Botany, 2010, v. 97, n. 8, p. 1391, doi. 10.3732/ajb.0900176
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- Article
Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection.
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- BMC Research Notes, 2012, v. 5, n. 1, p. 378, doi. 10.1186/1756-0500-5-378
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- Article
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09245-0
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- Article
Comparative Genomic Analysis and Virulence Differences in Closely Related Salmonella enterica Serotype Heidelberg Isolates from Humans, Retail Meats, and Animals.
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- Genome Biology & Evolution, 2014, v. 6, n. 5, p. 1046, doi. 10.1093/gbe/evu079
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- Article
Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters.
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- Genome Biology & Evolution, 2013, v. 5, n. 11, p. 2109, doi. 10.1093/gbe/evt159
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- Article
Interpretative Labor and the Bane of Nonstandardized Metadata in Public Health Surveillance and Food Safety.
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- Clinical Infectious Diseases, 2021, v. 73, n. 8, p. 1537, doi. 10.1093/cid/ciab615
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- Article
Outbreak of Tattoo-associated Nontuberculous Mycobacterial Skin Infections.
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- Clinical Infectious Diseases, 2019, v. 69, n. 6, p. 949, doi. 10.1093/cid/ciy979
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- Article
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91456-0
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- Article
Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01482
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- Article
Corrigendum: Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation.
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- 2018
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- Correction Notice
Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2015.01573
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- Article
Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01459
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- Article
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples.
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- PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166162
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- Article
Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America.
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- PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0161225
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- Article
RIPS (rapid intuitive pathogen surveillance): a tool for surveillance of genome sequence data from foodborne bacterial pathogens.
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- Frontiers in Bioinformatics, 2024, p. 01, doi. 10.3389/fbinf.2024.1415078
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- Article
Evaluation of Virulence Determinants Using Whole-Genome Sequencing and Phenotypic Biofilm Analysis of Outbreak-Linked Staphylococcus aureus Isolates.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.687625
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- Article
Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments.
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- PLoS ONE, 2022, v. 17, n. 9, p. 1, doi. 10.1371/journal.pone.0268470
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- Article
Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2015.01573
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- Publication type:
- Article
Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination.
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- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1914-x
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- Article
Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities.
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- BMC Infectious Diseases, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12879-015-0902-3
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- Article
Phylogenetic patterns and conservation among North American members of the genus Agalinis (Orobanchaceae).
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- BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-264
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- Article
Prospective modeling and estimating the epidemiologically informative match rate within large foodborne pathogen genomic databases.
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- BMC Research Notes, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13104-024-06847-z
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- Article
Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing.
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- BMC Microbiology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12866-015-0497-2
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- Article
Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato).
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- BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-114
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- Article
Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence.
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- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08695-2
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- Article