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Frontiers in cancer immunotherapy—a symposium report.
Published in:
Annals of the New York Academy of Sciences, 2021, v. 1489, n. 1, p. 30, doi. 10.1111/nyas.14526
By:
- Cable, Jennifer;
- Greenbaum, Benjamin;
- Pe'er, Dana;
- Bollard, Catherine M.;
- Bruni, Sofia;
- Griffin, Matthew E.;
- Allison, James P.;
- Wu, Catherine J.;
- Subudhi, Sumit K.;
- Mardis, Elaine R.;
- Brentjens, Renier;
- Sosman, Jeffry A.;
- Cemerski, Saso;
- Zavitsanou, Anastasia‐Maria;
- Proia, Theresa;
- Egeblad, Mikala;
- Nolan, Garry;
- Goswami, Sangeeta;
- Spranger, Stefani;
- Mackall, Crystal L.
Publication type:
Article
Inference of modules associated to eQTLs.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 13, p. e98, doi. 10.1093/nar/gks269
By:
- Kreimer, Anat;
- Litvin, Oren;
- Hao, Ke;
- Molony, Cliona;
- Pe’er, Dana;
- Pe'er, Itsik
Publication type:
Article
Engineering γδT cells limits tonic signaling associated with chimeric antigen receptors.
Published in:
Science Signaling, 2019, v. 12, n. 598, p. 1, doi. 10.1126/scisignal.aax1872
By:
- Fisher, Jonathan;
- Sharma, Roshan;
- Don, Dilu Wisidagamage;
- Barisa, Marta;
- Hurtado, Marina Olle;
- Abramowski, Pierre;
- Porter, Lucy;
- Day, William;
- Borea, Roberto;
- Inglott, Sarah;
- Anderson, John;
- Pe'er, Dana
Publication type:
Article
SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data.
Published in:
Nature Biotechnology, 2023, v. 41, n. 12, p. 1746, doi. 10.1038/s41587-023-01716-9
By:
- Persad, Sitara;
- Choo, Zi-Ning;
- Dien, Christine;
- Sohail, Noor;
- Masilionis, Ignas;
- Chaligné, Ronan;
- Nawy, Tal;
- Brown, Chrysothemis C.;
- Sharma, Roshan;
- Pe'er, Itsik;
- Setty, Manu;
- Pe'er, Dana
Publication type:
Article
Author Correction: Characterization of cell fate probabilities in single-cell data with Palantir.
Published in:
2019
By:
- Setty, Manu;
- Kiseliovas, Vaidotas;
- Levine, Jacob;
- Gayoso, Adam;
- Mazutis, Linas;
- Pe'er, Dana
Publication type:
Correction Notice
Characterization of cell fate probabilities in single-cell data with Palantir.
Published in:
Nature Biotechnology, 2019, v. 37, n. 4, p. 451, doi. 10.1038/s41587-019-0068-4
By:
- Setty, Manu;
- Kiseliovas, Vaidotas;
- Levine, Jacob;
- Gayoso, Adam;
- Mazutis, Linas;
- Pe'er, Dana
Publication type:
Article
Wishbone identifies bifurcating developmental trajectories from single-cell data.
Published in:
Nature Biotechnology, 2016, v. 34, n. 6, p. 637, doi. 10.1038/nbt.3569
By:
- Setty, Manu;
- Tadmor, Michelle D;
- Reich-Zeliger, Shlomit;
- Angel, Omer;
- Salame, Tomer Meir;
- Kathail, Pooja;
- Choi, Kristy;
- Bendall, Sean;
- Friedman, Nir;
- Pe'er, Dana
Publication type:
Article
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.
Published in:
Nature Biotechnology, 2013, v. 31, n. 6, p. 545, doi. 10.1038/nbt.2594
By:
- Amir, El-ad David;
- Davis, Kara L;
- Tadmor, Michelle D;
- Simonds, Erin F;
- Levine, Jacob H;
- Bendall, Sean C;
- Shenfeld, Daniel K;
- Krishnaswamy, Smita;
- Nolan, Garry P;
- Pe'er, Dana
Publication type:
Article
High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.
Published in:
Nature Biotechnology, 2009, v. 27, n. 12, p. 1173, doi. 10.1038/nbt.1589
By:
- Patwardhan, Rupali P.;
- Lee, Choli;
- Litvin, Oren;
- Young, David L.;
- Pe'er, Dana;
- Shendure, Jay
Publication type:
Article
Toward understanding and exploiting tumor heterogeneity.
Published in:
Nature Medicine, 2015, v. 21, n. 8, p. 846, doi. 10.1038/nm.3915
By:
- Alizadeh, Ash A;
- Aranda, Victoria;
- Bardelli, Alberto;
- Blanpain, Cedric;
- Bock, Christoph;
- Borowski, Christine;
- Caldas, Carlos;
- Califano, Andrea;
- Doherty, Michael;
- Elsner, Markus;
- Esteller, Manel;
- Fitzgerald, Rebecca;
- Korbel, Jan O;
- Lichter, Peter;
- Mason, Christopher E;
- Navin, Nicholas;
- Pe'er, Dana;
- Polyak, Kornelia;
- Roberts, Charles W M;
- Siu, Lillian
Publication type:
Article
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
Published in:
Nature Genetics, 2003, v. 34, n. 2, p. 166, doi. 10.1038/ng1165
By:
- Segal, Eran;
- Shapira, Michael;
- Regev, Aviv;
- Pe'er, Dana;
- Botstein, David;
- Koller, Daphne;
- Friedman, Nir
Publication type:
Article
Trajectories of cell-cycle progression from fixed cell populations.
Published in:
Nature Methods, 2015, v. 12, n. 10, p. 951, doi. 10.1038/nmeth.3545
By:
- Gut, Gabriele;
- Tadmor, Michelle D;
- Pe'er, Dana;
- Pelkmans, Lucas;
- Liberali, Prisca
Publication type:
Article
REUNION: transcription factor binding prediction and regulatory association inference from single-cell multi-omics data.
Published in:
Bioinformatics, 2024, v. 40, p. i567, doi. 10.1093/bioinformatics/btae234
By:
- Yang, Yang;
- Pe'er, Dana
Publication type:
Article
scKINETICS: inference of regulatory velocity with single-cell transcriptomics data.
Published in:
Bioinformatics, 2023, v. 39, p. i394, doi. 10.1093/bioinformatics/btad267
By:
- Burdziak, Cassandra;
- Zhao, Chujun Julia;
- Haviv, Doron;
- Alonso-Curbelo, Direna;
- Lowe, Scott W;
- Pe'er, Dana
Publication type:
Article
Context Sensitive Modeling of Cancer Drug Sensitivity.
Published in:
PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0133850
By:
- Chen, Bo-Juen;
- Litvin, Oren;
- Ungar, Lyle;
- Pe’er, Dana
Publication type:
Article
A Single-Cell Atlas of the Human Healthy Airways.
Published in:
2020
By:
- Deprez, Marie;
- Zaragosi, Laure-Emmanuelle;
- Truchi, Marin;
- Becavin, Christophe;
- García, Sandra Ruiz;
- Arguel, Marie-Jeanne;
- Plaisant, Magali;
- Magnone, Virginie;
- Lebrigand, Kevin;
- Abelanet, Sophie;
- Brau, Frédéric;
- Paquet, Agnès;
- Pe'er, Dana;
- Marquette, Charles-Hugo;
- Leroy, Sylvie;
- Barbry, Pascal;
- Ruiz García, Sandra
Publication type:
journal article
PhenoGraph and viSNE facilitate the identification of abnormal T‐cell populations in routine clinical flow cytometric data.
Published in:
Cytometry. Part B, 2018, v. 94, n. 5, p. 588, doi. 10.1002/cyto.b.21588
By:
- DiGiuseppe, Joseph A.;
- Cardinali, Jolene L.;
- Rezuke, William N.;
- Pe'er, Dana
Publication type:
Article
Detection of minimal residual disease in B lymphoblastic leukemia using vi SNE.
Published in:
Cytometry. Part B, 2015, v. 88, n. 5, p. 294, doi. 10.1002/cyto.b.21252
By:
- DiGiuseppe, Joseph A.;
- Tadmor, Michelle D.;
- Pe'er, Dana
Publication type:
Article
Normalization of mass cytometry data with bead standards.
Published in:
Cytometry. Part A, 2013, v. 83A, n. 5, p. 483, doi. 10.1002/cyto.a.22271
By:
- Finck, Rachel;
- Simonds, Erin F.;
- Jager, Astraea;
- Krishnaswamy, Smita;
- Sachs, KarEN;
- Fantl, WENdy;
- Pe'er, Dana;
- Nolan, Garry P.;
- BENdall, Sean C.
Publication type:
Article
JISTIC: Identification of Significant Targets in Cancer.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 189, doi. 10.1186/1471-2105-11-189
By:
- Sanchez-Garcia, Felix;
- Akavia, Uri David;
- Mozes, Eyal;
- Pe'er, Dana
Publication type:
Article
Using systems and structure biology tools to dissect cellular phenotypes.
Published in:
Journal of the American Medical Informatics Association, 2012, v. 19, n. 2, p. 171, doi. 10.1136/amiajnl-2011-000490
By:
- Floratos, Aris;
- Honig, Barry;
- Pe'er, Dana;
- Califano, Andrea
Publication type:
Article
Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model.
Published in:
PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0233962
By:
- Price, Jessica C.;
- Azizi, Elham;
- Naiche, L. A.;
- Parvani, Jenny G.;
- Shukla, Priyanka;
- Kim, Seoyeon;
- Slack-Davis, Jill K.;
- Pe'er, Dana;
- Kitajewski, Jan K.
Publication type:
Article
Harnessing gene expression to identify the genetic basis of drug resistance.
Published in:
Molecular Systems Biology, 2009, v. 5, n. 1, p. 310, doi. 10.1038/msb.2009.69
By:
- Chen, Bo‐Juen;
- Causton, Helen C;
- Mancenido, Denesy;
- Goddard, Noel L;
- Perlstein, Ethan O;
- Pe'er, Dana
Publication type:
Article
Cross-platform dataset of multiplex fluorescent cellular object image annotations.
Published in:
Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02108-z
By:
- Aleynick, Nathaniel;
- Li, Yanyun;
- Xie, Yubin;
- Zhang, Mianlei;
- Posner, Andrew;
- Roshal, Lev;
- Pe'er, Dana;
- Vanguri, Rami S.;
- Hollmann, Travis J.
Publication type:
Article
Scalable microfluidics for single-cell RNA printing and sequencing.
Published in:
Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0684-3
By:
- Bose, Sayantan;
- Zhenmao Wan;
- Carr, Ambrose;
- Rizvi, Abbas H.;
- Vieira, Gregory;
- Pe'er, Dana;
- Sims, Peter A.
Publication type:
Article
Broadening horizons: holistic viewpoints from the Biology of Genomes.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 416, doi. 10.1186/s13059-014-0416-0
By:
- Carr, Ambrose;
- Pe’er, Dana
Publication type:
Article
Supervised discovery of interpretable gene programs from single-cell data.
Published in:
Nature Biotechnology, 2024, v. 42, n. 7, p. 1084, doi. 10.1038/s41587-023-01940-3
By:
- Kunes, Russell Z.;
- Walle, Thomas;
- Land, Max;
- Nawy, Tal;
- Pe'er, Dana
Publication type:
Article
Mapping Differentiation under Mixed Culture Conditions Reveals a Tunable Continuum of T Cell Fates.
Published in:
PLoS Biology, 2013, v. 11, n. 7, p. 1, doi. 10.1371/journal.pbio.1001616
By:
- Antebi, Yaron E.;
- Reich-Zeliger, Shlomit;
- Hart, Yuval;
- Mayo, Avi;
- Eizenberg, Inbal;
- Rimer, Jacob;
- Putheti, Prabhakar;
- Pe'er, Dana;
- Friedman, Nir
Publication type:
Article
Minreg: Inferring an active regulator set.
Published in:
Bioinformatics, 2002, v. 18, p. S258
By:
- Pe'er, Dana;
- Regev, Aviv;
- Tanay, Amos
Publication type:
Article
Inferring subnetworks from perturbed expression profiles.
Published in:
Bioinformatics, 2001, v. 17, p. 215, doi. 10.1093/bioinformatics/17.suppl_1.s215
By:
- Pe’er, Dana;
- Regev, Aviv;
- Elidan, Gal;
- Friedman, Nir
Publication type:
Article
Genotype-Environment Interactions Reveal Causal Pathways That Mediate Genetic Effects on Phenotype.
Published in:
PLoS Genetics, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pgen.1003803
By:
- Gagneur, Julien;
- Stegle, Oliver;
- Zhu, Chenchen;
- Jakob, Petra;
- Tekkedil, Manu M.;
- Aiyar, Raeka S.;
- Schuon, Ann-Kathrin;
- Pe'er, Dana;
- Steinmetz, Lars M.
Publication type:
Article
Environmental Stresses Disrupt Telomere Length Homeostasis.
Published in:
PLoS Genetics, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pgen.1003721
By:
- Romano, Gal Hagit;
- Harari, Yaniv;
- Yehuda, Tal;
- Podhorzer, Ariel;
- Rubinstein, Linda;
- Shamir, Ron;
- Gottlieb, Assaf;
- Silberberg, Yael;
- Pe'er, Dana;
- Ruppin, Eytan;
- Sharan, Roded;
- Kupiec, Martin
Publication type:
Article
Learning a Prior on Regulatory Potential from eQTL Data.
Published in:
PLoS Genetics, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pgen.1000358
By:
- Su-In Lee;
- Dudley, Aimée M.;
- Drubin, David;
- Silver, Pamela A.;
- Krogan, Nevan J.;
- Pe'er, Dana;
- Koller, Daphne
Publication type:
Article
MinReg: A Scalable Algorithm for Learning Parsimonious Regulatory Networks in Yeast and Mammals.
Published in:
Journal of Machine Learning Research, 2006, v. 7, n. 2, p. 167
By:
- Pe'er, Dana;
- Tanay, Amos;
- Regev, Aviv;
- Jaakkola, Tommi
Publication type:
Article
Learning Module Networks.
Published in:
Journal of Machine Learning Research, 2005, v. 6, n. 4, p. 557
By:
- Segal, Eran;
- Pe'er, Dana;
- Regev, Aviv;
- Koller, Daphne;
- Friedman, Nir;
- Jaakkola, Tommi
Publication type:
Article
Learning time-varying information flow from single-cell epithelial to mesenchymal transition data.
Published in:
PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0203389
By:
- Krishnaswamy, Smita;
- Zivanovic, Nevena;
- Sharma, Roshan;
- Pe’er, Dana;
- Bodenmiller, Bernd
Publication type:
Article

Found: 36