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BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2.
- Published in:
- PLoS Genetics, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pgen.1007752
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- Publication type:
- Article
The UCSC Genome Browser database: 2016 update.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D717, doi. 10.1093/nar/gkv1275
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- Publication type:
- Article
Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26929-x
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- Publication type:
- Article
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
- Published in:
- Nature Biotechnology, 2021, v. 39, n. 3, p. 302, doi. 10.1038/s41587-020-0719-5
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- Publication type:
- Article
Variation graph toolkit improves read mapping by representing genetic variation in the reference.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 10, p. 875, doi. 10.1038/nbt.4227
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- Publication type:
- Article
Variation graph toolkit improves read mapping by representing genetic variation in the reference.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 9, p. 875, doi. 10.1038/nbt.4227
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- Publication type:
- Article
Linear assembly of a human centromere on the Y chromosome.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 4, p. 321, doi. 10.1038/nbt.4109
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- Publication type:
- Article
Improved data analysis for the MinION nanopore sequencer.
- Published in:
- Nature Methods, 2015, v. 12, n. 4, p. 351, doi. 10.1038/nmeth.3290
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- Publication type:
- Article
Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation.
- Published in:
- Nature Methods, 2007, v. 4, n. 7, p. 563, doi. 10.1038/nmeth1061
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- Publication type:
- Article
Optimal gap-affine alignment in O(s) space.
- Published in:
- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad074
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- Publication type:
- Article
GBZ file format for pangenome graphs.
- Published in:
- Bioinformatics, 2022, v. 38, n. 22, p. 5012, doi. 10.1093/bioinformatics/btac656
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- Publication type:
- Article
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments.
- Published in:
- GigaScience, 2020, v. 9, n. 6, p. 1, doi. 10.1093/gigascience/giaa047
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- Publication type:
- Article
A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).
- Published in:
- GigaScience, 2017, v. 6, n. 11, p. 1, doi. 10.1093/gigascience/gix098
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- Publication type:
- Article
Accurate Reconstruction of Insertion-Deletion Histories by Statistical Phylogenetics.
- Published in:
- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0034572
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- Publication type:
- Article
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.76562
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- Publication type:
- Article
A unifying model of genome evolution under parsimony.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-206
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- Publication type:
- Article
A unifying model of genome evolution under parsimony .
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-206
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- Publication type:
- Article
Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization.
- Published in:
- 2011
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- Publication type:
- Product Review
Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits.
- Published in:
- 2021
- By:
- Publication type:
- Correction Notice
Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits.
- Published in:
- Molecular Biology & Evolution, 2021, v. 38, n. 2, p. 486, doi. 10.1093/molbev/msaa240
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- Publication type:
- Article
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
- Published in:
- Nature, 2007, v. 450, n. 7167, p. 219, doi. 10.1038/nature06340
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- Publication type:
- Article
Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research.
- Published in:
- Journal of the American Medical Informatics Association, 2023, v. 30, n. 7, p. 1293, doi. 10.1093/jamia/ocad048
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- Publication type:
- Article
The NIH BD2K center for big data in translational genomics.
- Published in:
- 2015
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- Publication type:
- journal article
The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain.
- Published in:
- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 6, p. 1795, doi. 10.1534/g3.119.400071
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- Publication type:
- Article
An average-case sublinear forward algorithm for the haploid Li and Stephens model.
- Published in:
- Algorithms for Molecular Biology, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13015-019-0144-9
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- Publication type:
- Article
A graph extension of the positional Burrows-Wheeler transform and its applications.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0109-9
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- Publication type:
- Article
ProTECT—Prediction of T-Cell Epitopes for Cancer Therapy.
- Published in:
- Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.483296
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- Publication type:
- Article
Inversion polymorphism in a complete human genome assembly.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02919-8
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- Publication type:
- Article
TrawlerWeb: an online <italic>de novo</italic> motif discovery tool for next-generation sequencing datasets.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4630-0
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- Publication type:
- Article
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
- Published in:
- Nature, 2014, v. 516, n. 7530, p. 242, doi. 10.1038/nature13760
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- Publication type:
- Article
Bridging the rodent to human translational gap: Marmosets as model systems for the study of Alzheimer's disease.
- Published in:
- Alzheimer's & Dementia: Translational Research & Clinical Interventions, 2023, v. 9, n. 3, p. 1, doi. 10.1002/trc2.12417
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- Publication type:
- Article
The UCSC Genome Browser database: 2024 update.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D1082, doi. 10.1093/nar/gkad987
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- Publication type:
- Article
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1103-0
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- Publication type:
- Article
Toward a data infrastructure for the Plant Cell Atlas.
- Published in:
- Plant Physiology, 2023, v. 191, n. 1, p. 35, doi. 10.1093/plphys/kiac468
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- Publication type:
- Article
Local read haplotagging enables accurate long-read small variant calling.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50079-5
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- Publication type:
- Article
Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station Using Nanopore Sequencing.
- Published in:
- Genes, 2021, v. 12, n. 1, p. 106, doi. 10.3390/genes12010106
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- Publication type:
- Article
Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing.
- Published in:
- Genes, 2020, v. 11, n. 1, p. 76, doi. 10.3390/genes11010076
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- Publication type:
- Article
Genotyping structural variants in pangenome graphs using the vg toolkit.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-1941-7
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- Publication type:
- Article
Haplotype-aware diplotyping from noisy long reads.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1709-0
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- Publication type:
- Article
Efficient dynamic variation graphs.
- Published in:
- Bioinformatics, 2020, v. 36, n. 21, p. 5139, doi. 10.1093/bioinformatics/btaa640
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- Publication type:
- Article
Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts.
- Published in:
- Bioinformatics, 2020, v. 36, n. 19, p. 4928, doi. 10.1093/bioinformatics/btaa601
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- Publication type:
- Article
Distance indexing and seed clustering in sequence graphs.
- Published in:
- Bioinformatics, 2020, v. 36, p. i146, doi. 10.1093/bioinformatics/btaa446
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- Publication type:
- Article
Haplotype-aware graph indexes.
- Published in:
- Bioinformatics, 2020, v. 36, n. 2, p. 400, doi. 10.1093/bioinformatics/btz575
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- Publication type:
- Article
Sequence tube maps: making graph genomes intuitive to commuters.
- Published in:
- Bioinformatics, 2019, v. 35, n. 24, p. 5318, doi. 10.1093/bioinformatics/btz597
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- Publication type:
- Article
Modelling haplotypes with respect to reference cohort variation graphs.
- Published in:
- Bioinformatics, 2017, v. 33, n. 14, p. i118, doi. 10.1093/bioinformatics/btx236
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- Publication type:
- Article
Canonical, stable, general mapping using context schemes.
- Published in:
- Bioinformatics, 2015, v. 31, n. 22, p. 3569, doi. 10.1093/bioinformatics/btv435
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- Publication type:
- Article
Comparative assembly hubs: Web-accessible browsers for comparative genomics.
- Published in:
- Bioinformatics, 2014, v. 30, n. 23, p. 3293, doi. 10.1093/bioinformatics/btu534
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- Publication type:
- Article
Ragout—a reference-assisted assembly tool for bacterial genomes.
- Published in:
- Bioinformatics, 2014, v. 30, n. 12, p. i302, doi. 10.1093/bioinformatics/btu280
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- Publication type:
- Article
Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.
- Published in:
- Bioinformatics, 2014, v. 30, n. 7, p. 1003, doi. 10.1093/bioinformatics/btt637
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- Publication type:
- Article
HAL: a hierarchical format for storing and analyzing multiple genome alignments.
- Published in:
- Bioinformatics, 2013, v. 29, n. 10, p. 1341, doi. 10.1093/bioinformatics/btt128
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- Publication type:
- Article