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Practical Recommendations for Supporting a Systems Biology Cyberinfrastructure.
Published in:
Data Science Journal, 2020, v. 19, p. 1, doi. 10.5334/dsj-2020-024
By:
- DeBarry, Jeremy D.;
- Kissinger, Jessica C.;
- Nural, Mustafa V.;
- Pakala, Suman B.;
- Humphrey, Jay C.;
- Meyer, Esmeralda V. S.;
- Cordy, Regina Joice;
- Cabrera-Mora, Monica;
- Trippe, Elizabeth D.;
- Aguilar, Jacob B.;
- Karpuzoglu, Ebru;
- Yan, Yi H.;
- Brady, Jessica A.;
- Hankus, Allison N.;
- Lackman, Nicolas;
- Gingle, Alan R.;
- Nayak, Vishal;
- Moreno, Alberto;
- Joyner, Chester J.;
- Gutierrez, Juan B.
Publication type:
Article
Large-Scale Transcriptional Response to Hypoxia in Aspergillus fumigatus Observed Using RNAseq Identifies a Novel Hypoxia Regulated ncRNA.
Published in:
Mycopathologia, 2014, v. 178, n. 5/6, p. 331, doi. 10.1007/s11046-014-9779-8
By:
- Losada, Liliana;
- Barker, Bridget;
- Pakala, Suman;
- Pakala, Suchitra;
- Joardar, Vinita;
- Zafar, Nikhat;
- Mounaud, Stephanie;
- Fedorova, Natalie;
- Nierman, William;
- Cramer, Robert
Publication type:
Article
Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19810-4
By:
- Strickland, Britton A.;
- Rajagopala, Seesandra V.;
- Kamali, Arash;
- Shilts, Meghan H.;
- Pakala, Suman B.;
- Boukhvalova, Marina S.;
- Yooseph, Shibu;
- Blanco, Jorge C. G.;
- Das, Suman R.
Publication type:
Article
The binary protein-protein interaction landscape of Escherichia coli.
Published in:
Nature Biotechnology, 2014, v. 32, n. 3, p. 285, doi. 10.1038/nbt.2831
By:
- Rajagopala, Seesandra V;
- Sikorski, Patricia;
- Kumar, Ashwani;
- Mosca, Roberto;
- Vlasblom, James;
- Arnold, Roland;
- Franca-Koh, Jonathan;
- Pakala, Suman B;
- Phanse, Sadhna;
- Ceol, Arnaud;
- Häuser, Roman;
- Siszler, Gabriella;
- Wuchty, Stefan;
- Emili, Andrew;
- Babu, Mohan;
- Aloy, Patrick;
- Pieper, Rembert;
- Uetz, Peter
Publication type:
Article
Suppression subtractive hybridization and comparative expression of a pore-forming toxin and glycosyl hydrolase genes in Rhizoctonia solani during potato sprout infection.
Published in:
Molecular Genetics & Genomics, 2015, v. 290, n. 3, p. 877, doi. 10.1007/s00438-014-0962-x
By:
- Chamoun, Rony;
- Samsatly, Jamil;
- Pakala, Suman;
- Cubeta, Marc;
- Jabaji, Suha
Publication type:
Article
CD4<sup>+</sup> T cells expressing CX3CR1, GPR56, with variable CD57 are associated with cardiometabolic diseases in persons with HIV.
Published in:
Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1099356
By:
- Wanjalla, Celestine N.;
- Gabriel, Curtis L.;
- Fuseini, Hubaida;
- Bailin, Samuel S.;
- Mashayekhi, Mona;
- Simmons, Joshua;
- Warren, Christopher M.;
- Glass, David R.;
- Oakes, Jared;
- Gangula, Rama;
- Wilfong, Erin;
- Priest, Stephen;
- Temu, Tecla;
- Newell, Evan W.;
- Pakala, Suman;
- Kalams, Spyros A.;
- Gianella, Sara;
- Smith, David;
- Harrison, David G.;
- Mallal, Simon A.
Publication type:
Article
Specific Ablation of Jak2 from CD11c+ Cells Attenuates Salt‐Sensitive Hypertension through an ENaC‐Dependent Mechanism.
Published in:
FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.R3654
By:
- Saleem, Mohammad;
- Aden, Luul;
- Pitzer, Ashley;
- Elijovich, Fernando;
- Laffer, Cheryl;
- Pakala, Suman;
- Ishimwe, Jeanne;
- Kleyman, Thomas;
- Kirabo, Annet
Publication type:
Article
Structural analysis of the Rhizoctonia solani agglutinin reveals a domain-swapping dimeric assembly.
Published in:
FEBS Journal, 2013, v. 280, n. 8, p. 1750, doi. 10.1111/febs.12190
By:
- Skamnaki, Vassiliki T.;
- Peumans, Willy J.;
- Kantsadi, Anastassia L.;
- Cubeta, Marc A.;
- Plas, Kirsten;
- Pakala, Suman;
- Zographos, Spyridon E.;
- Smagghe, Guy;
- Nierman, William C.;
- Damme, Els J. M.;
- Leonidas, Demetres D.
Publication type:
Article
Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence.
Published in:
PLoS Pathogens, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.ppat.1004834
By:
- Losada, Liliana;
- Mounaud, Stephanie;
- Joardar, Vinita;
- Pakala, Suman B.;
- Pakala, Suchitra;
- Venepally, Pratap;
- Nierman, William C.;
- Sugui, Janyce A.;
- Chang, Yun C.;
- Figat, Abigail;
- Kwon-Chung, Kyung J.;
- Eckhaus, Michael A.;
- Fedorova, Natalie
Publication type:
Article
Ligation‐based assay for variant typing without sequencing: Application to SARS‐CoV‐2 variants of concern.
Published in:
Influenza & Other Respiratory Viruses, 2023, v. 17, n. 1, p. 1, doi. 10.1111/irv.13083
By:
- Nelson, Dalton J.;
- Shilts, Meghan H.;
- Pakala, Suman B.;
- Das, Suman R.;
- Schmitz, Jonathan E.;
- Haselton, Frederick R.
Publication type:
Article
COVID‐19 severity from Omicron and Delta SARS‐CoV‐2 variants.
Published in:
Influenza & Other Respiratory Viruses, 2022, v. 16, n. 5, p. 832, doi. 10.1111/irv.12982
By:
- Wrenn, Jesse O.;
- Pakala, Suman B.;
- Vestal, Grant;
- Shilts, Meghan H.;
- Brown, Hunter M.;
- Bowen, Sara M.;
- Strickland, Britton A.;
- Williams, Timothy;
- Mallal, Simon A.;
- Jones, Ian D.;
- Schmitz, Jonathan E.;
- Self, Wesley H.;
- Das, Suman R.
Publication type:
Article
Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques.
Published in:
Malaria Journal, 2017, v. 16, p. 1, doi. 10.1186/s12936-017-2029-z
By:
- Yan Tang;
- Joyner, Chester J.;
- Cabrera-Mora, Monica;
- Saney, Celia L.;
- Lapp, Stacey A.;
- Nural, Mustafa V.;
- Pakala, Suman B.;
- DeBarry, Jeremy D.;
- Soderberg, Stephanie;
- Kissinger, Jessica C.;
- Lamb, Tracey J.;
- Galinski, Mary R.;
- Styczynski, Mark P.
Publication type:
Article
Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus.
Published in:
Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00530
By:
- Wiemann, Philipp;
- Lechner, Beatrix E.;
- Baccile, Joshua A.;
- Velk, Thomas A.;
- Wen-Bing Yin;
- Jin Woo Bok;
- Pakala, Suman;
- Losada, Liliana;
- Nierman, William C.;
- Schroeder, Frank C.;
- Haas, Hubertus;
- Keller, Nancy P.
Publication type:
Article
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-698
By:
- Joardar, Vinita;
- Abrams, Natalie F.;
- Hostetler, Jessica;
- Paukstelis, Paul J.;
- Pakala, Suchitra;
- Pakala, Suman B.;
- Zafar, Nikhat;
- Abolude, Olukemi O.;
- Payne, Gary;
- Andrianopoulos, Alex;
- Denning, David W.;
- C. Nierman, William
Publication type:
Article
Cross-reaction between Formosan termite (Coptotermes formosanus) proteins and cockroach allergens.
Published in:
PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0182260
By:
- Mattison, Christopher P.;
- Khurana, Taruna;
- Tarver, Matthew R.;
- Florane, Christopher B.;
- Grimm, Casey C.;
- Pakala, Suman B.;
- Cottone, Carrie B.;
- Riegel, Claudia;
- Bren-Mattison, Yvette;
- Slater, Jay E.
Publication type:
Article
Epoxygenase Cyp2c44 Regulates Hepatic Lipid Metabolism and Insulin Signaling by Controlling FATP2 Localization and Activation of the DAG/PKCδ Axis.
Published in:
Diabetes, 2024, v. 73, n. 8, p. 1229, doi. 10.2337/db23-0493
By:
- Ghoshal, Kakali;
- Luther, James M.;
- Pakala, Suman B.;
- Chetyrkin, Sergei;
- Falck, John R.;
- Zent, Roy;
- Wasserman, David H.;
- Pozzi, Ambra
Publication type:
Article

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