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CyFi-MAP: an interactive pathway-based resource for cystic fibrosis.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-01618-3
By:
- Pereira, Catarina;
- Mazein, Alexander;
- Farinha, Carlos M.;
- Gray, Michael A.;
- Kunzelmann, Karl;
- Ostaszewski, Marek;
- Balaur, Irina;
- Amaral, Margarida D.;
- Falcao, Andre O.
Publication type:
Article
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
Published in:
2020
By:
- Ostaszewski, Marek;
- Mazein, Alexander;
- Gillespie, Marc E.;
- Kuperstein, Inna;
- Niarakis, Anna;
- Hermjakob, Henning;
- Pico, Alexander R.;
- Willighagen, Egon L.;
- Evelo, Chris T.;
- Hasenauer, Jan;
- Schreiber, Falk;
- Dräger, Andreas;
- Demir, Emek;
- Wolkenhauer, Olaf;
- Furlong, Laura I.;
- Barillot, Emmanuel;
- Dopazo, Joaquin;
- Orta-Resendiz, Aurelio;
- Messina, Francesco;
- Valencia, Alfonso
Publication type:
Correction Notice
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
Published in:
Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0477-8
By:
- Ostaszewski, Marek;
- Mazein, Alexander;
- Gillespie, Marc E.;
- Kuperstein, Inna;
- Niarakis, Anna;
- Hermjakob, Henning;
- Pico, Alexander R.;
- Willighagen, Egon L.;
- Evelo, Chris T.;
- Hasenauer, Jan;
- Schreiber, Falk;
- Dräger, Andreas;
- Demir, Emek;
- Wolkenhauer, Olaf;
- Furlong, Laura I.;
- Barillot, Emmanuel;
- Dopazo, Joaquin;
- Orta-Resendiz, Aurelio;
- Messina, Francesco;
- Valencia, Alfonso
Publication type:
Article
Evolutionary Conservation and Network Structure Characterize Genes of Phenotypic Relevance for Mitosis in Human.
Published in:
PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036488
By:
- Ostaszewski, Marek;
- Eifes, Serge;
- del Sol, Antonio
Publication type:
Article
Biomarkers of systemic treatment response in people with psoriasis: a scoping review.
Published in:
British Journal of Dermatology, 2022, v. 187, n. 4, p. 494, doi. 10.1111/bjd.21677
By:
- Corbett, Mark;
- Ramessur, Ravi;
- Marshall, David;
- Acencio, Marcio L.;
- Ostaszewski, Marek;
- Barbosa, Ines A.;
- Dand, Nick;
- Di Meglio, Paola;
- Haddad, Salma;
- Jensen, Andreas H.M.;
- Koopmann, Witte;
- Mahil, Satveer K.;
- Rahmatulla, Seher;
- Rastrick, Joe;
- Saklatvala, Jake;
- Weidinger, Stephan;
- Wright, Kath;
- Eyerich, Kilian;
- Barker, Jonathan N.;
- Ndlovu, Matladi
Publication type:
Article
Biomarkers of disease progression in people with psoriasis: a scoping review*.
Published in:
British Journal of Dermatology, 2022, v. 187, n. 4, p. 481, doi. 10.1111/bjd.21627
By:
- Ramessur, Ravi;
- Corbett, Mark;
- Marshall, David;
- Acencio, Marcio L.;
- Barbosa, Ines A.;
- Dand, Nick;
- Di Meglio, Paola;
- Haddad, Salma;
- Jensen, Andreas H.M.;
- Koopmann, Witte;
- Mahil, Satveer K.;
- Ostaszewski, Marek;
- Rahmatulla, Seher;
- Rastrick, Joe;
- Saklatvala, Jake;
- Weidinger, Stephan;
- Wright, Kath;
- Eyerich, Kilian;
- Ndlovu, Matladi;
- Barker, Jonathan N.
Publication type:
Article
RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa017
By:
- Singh, Vidisha;
- Kalliolias, George D;
- Ostaszewski, Marek;
- Veyssiere, Maëva;
- Pilalis, Eleftherios;
- Gawron, Piotr;
- Mazein, Alexander;
- Bonnet, Eric;
- Petit-Teixeira, Elisabeth;
- Niarakis, Anna
Publication type:
Article
Prediction of the Vaccine-derived Poliovirus Outbreak Incidence: A Hybrid Machine Learning Approach.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61853-y
By:
- Hemedan, Ahmed A.;
- Abd Elaziz, Mohamed;
- Jiao, Pengcheng;
- Alavi, Amir H.;
- Bahgat, Mahmoud;
- Ostaszewski, Marek;
- Schneider, Reinhard;
- Ghazy, Haneen A.;
- Ewees, Ahmed A.;
- Lu, Songfeng
Publication type:
Article
The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease.
Published in:
Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1257321
By:
- Acencio, Marcio Luis;
- Ostaszewski, Marek;
- Mazein, Alexander;
- Rosenstiel, Philip;
- Aden, Konrad;
- Mishra, Neha;
- Andersen, Vibeke;
- Sidiropoulos, Prodromos;
- Banos, Aggelos;
- Filia, Anastasia;
- Rahmouni, Souad;
- Finckh, Axel;
- Wei Gu;
- Schneider, Reinhard;
- Satagopam, Venkata
Publication type:
Article
COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms.
Published in:
Molecular Systems Biology, 2021, v. 17, n. 12, p. 1, doi. 10.15252/msb.202110851
By:
- Ostaszewski, Marek;
- Niarakis, Anna;
- Mazein, Alexander;
- Kuperstein, Inna;
- Phair, Robert;
- Orta‐Resendiz, Aurelio;
- Singh, Vidisha;
- Aghamiri, Sara Sadat;
- Acencio, Marcio Luis;
- Glaab, Enrico;
- Ruepp, Andreas;
- Fobo, Gisela;
- Montrone, Corinna;
- Brauner, Barbara;
- Frishman, Goar;
- Monraz Gómez, Luis Cristóbal;
- Somers, Julia;
- Hoch, Matti;
- Kumar Gupta, Shailendra;
- Scheel, Julia
Publication type:
Article
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms.
Published in:
Molecular Systems Biology, 2021, v. 17, n. 10, p. 1, doi. 10.15252/msb.202110387
By:
- Ostaszewski, Marek;
- Niarakis, Anna;
- Mazein, Alexander;
- Kuperstein, Inna;
- Phair, Robert;
- Orta‐Resendiz, Aurelio;
- Singh, Vidisha;
- Aghamiri, Sara Sadat;
- Acencio, Marcio Luis;
- Glaab, Enrico;
- Ruepp, Andreas;
- Fobo, Gisela;
- Montrone, Corinna;
- Brauner, Barbara;
- Frishman, Goar;
- Monraz Gómez, Luis Cristóbal;
- Somers, Julia;
- Hoch, Matti;
- Kumar Gupta, Shailendra;
- Scheel, Julia
Publication type:
Article
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.
Published in:
NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-018-0059-y
By:
- Mazein, Alexander;
- Ostaszewski, Marek;
- Kuperstein, Inna;
- Watterson, Steven;
- Le Novère, Nicolas;
- Lefaudeux, Diane;
- De Meulder, Bertrand;
- Pellet, Johann;
- Balaur, Irina;
- Saqi, Mansoor;
- Nogueira, Maria Manuela;
- He, Feng;
- Parton, Andrew;
- Lemonnier, Nathanaël;
- Gawron, Piotr;
- Gebel, Stephan;
- Hainaut, Pierre;
- Ollert, Markus;
- Dogrusoz, Ugur;
- Barillot, Emmanuel
Publication type:
Article
Reusability and composability in process description maps: RAS–RAF–MEK–ERK signalling.
Published in:
Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab103
By:
- Mazein, Alexander;
- Rougny, Adrien;
- Karr, Jonathan R;
- Saez-Rodriguez, Julio;
- Ostaszewski, Marek;
- Schneider, Reinhard
Publication type:
Article
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Published in:
Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1848, doi. 10.1093/bib/bbaa046
By:
- Niarakis, Anna;
- Kuiper, Martin;
- Ostaszewski, Marek;
- Sheriff, Rahuman S Malik;
- Casals-Casas, Cristina;
- Thieffry, Denis;
- Freeman, Tom C;
- Thomas, Paul;
- Touré, Vasundra;
- Noël, Vincent;
- Stoll, Gautier;
- Saez-Rodriguez, Julio;
- Naldi, Aurélien;
- Oshurko, Eugenia;
- Xenarios, Ioannis;
- Soliman, Sylvain;
- Chaouiya, Claudine;
- Helikar, Tomáš;
- Calzone, Laurence
Publication type:
Article
Closing the gap between formats for storing layout information in systems biology.
Published in:
Briefings in Bioinformatics, 2021, v. 22, n. 1, p. 608, doi. 10.1093/bib/bbaa030
By:
- Hoksza, David;
- Gawron, Piotr;
- Ostaszewski, Marek;
- Hasenauer, Jan;
- Schneider, Reinhard
Publication type:
Article
Closing the gap between formats for storing layout information in systems biology.
Published in:
Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1249, doi. 10.1093/bib/bbz067
By:
- Hoksza, David;
- Gawron, Piotr;
- Ostaszewski, Marek;
- Hasenauer, Jan;
- Schneider, Reinhard
Publication type:
Article
Community-driven roadmap for integrated disease maps.
Published in:
Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 659, doi. 10.1093/bib/bby024
By:
- Ostaszewski, Marek;
- Gebel, Stephan;
- Kuperstein, Inna;
- Mazein, Alexander;
- Zinovyev, Andrei;
- Dogrusoz, Ugur;
- Hasenauer, Jan;
- Fleming, Ronan M T;
- Novère, Nicolas Le;
- Gawron, Piotr;
- Ligon, Thomas;
- Niarakis, Anna;
- Nickerson, David;
- Weindl, Daniel;
- Balling, Rudi;
- Barillot, Emmanuel;
- Auffray, Charles;
- Schneider, Reinhard
Publication type:
Article
Mechanistic modeling of the SARS-CoV-2 disease map.
Published in:
BioData Mining, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13040-021-00234-1
By:
- Rian, Kinza;
- Esteban-Medina, Marina;
- Hidalgo, Marta R.;
- Çubuk, Cankut;
- Falco, Matias M.;
- Loucera, Carlos;
- Gunyel, Devrim;
- Ostaszewski, Marek;
- Peña-Chilet, María;
- Dopazo, Joaquín
Publication type:
Article
Converging peripheral blood microRNA profiles in Parkinson's disease and progressive supranuclear palsy.
Published in:
Brain Communications, 2024, v. 6, n. 3, p. 1, doi. 10.1093/braincomms/fcae187
By:
- Pavelka, Lukas;
- Rauschenberger, Armin;
- Hemedan, Ahmed;
- Ostaszewski, Marek;
- Glaab, Enrico;
- Krüger, Rejko;
- Consortium, NCER-PD
Publication type:
Article
Author Correction: Prediction of the Vaccine-derived Poliovirus Outbreak Incidence: A Hybrid Machine Learning Approach.
Published in:
2020
By:
- Hemedan, Ahmed A.;
- Elaziz, Mohamed Abd;
- Jiao, Pengcheng;
- Alavi, Amir H.;
- Bahgat, Mahmoud;
- Ostaszewski, Marek;
- Schneider, Reinhard;
- Ghazy, Haneen A.;
- Ewees, Ahmed A.;
- Lu, Songfeng
Publication type:
Correction Notice
Clustering approaches for visual knowledge exploration in molecular interaction networks.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2314-z
By:
- Ostaszewski, Marek;
- Kieffer, Emmanuel;
- Danoy, Grégoire;
- Schneider, Reinhard;
- Bouvry, Pascal
Publication type:
Article
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Published in:
Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2023.1282859
By:
- Niarakis, Anna;
- Ostaszewski, Marek;
- Mazein, Alexander;
- Kuperstein, Inna;
- Kutmon, Martina;
- Gillespie, Marc E.;
- Funahashi, Akira;
- Acencio, Marcio Luis;
- Hemedan, Ahmed;
- Aichem, Michael;
- Klein, Karsten;
- Czauderna, Tobias;
- Burtscher, Felicia;
- Yamada, Takahiro G.;
- Yusuke Hiki;
- Hiroi, Noriko F.;
- Hu, Finterly;
- Nhung Pham;
- Ehrhart, Friederike;
- Willighagen, Egon L.
Publication type:
Article
Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map.
Published in:
Molecular Neurobiology, 2014, v. 49, n. 1, p. 88, doi. 10.1007/s12035-013-8489-4
By:
- Fujita, Kazuhiro;
- Ostaszewski, Marek;
- Matsuoka, Yukiko;
- Ghosh, Samik;
- Glaab, Enrico;
- Trefois, Christophe;
- Crespo, Isaac;
- Perumal, Thanneer;
- Jurkowski, Wiktor;
- Antony, Paul;
- Diederich, Nico;
- Buttini, Manuel;
- Kodama, Akihiko;
- Satagopam, Venkata;
- Eifes, Serge;
- Sol, Antonio;
- Schneider, Reinhard;
- Kitano, Hiroaki;
- Balling, Rudi
Publication type:
Article
Similar α-Synuclein staining in the colon mucosa in patients with Parkinson's disease and controls.
Published in:
2016
By:
- Antunes, Laurent;
- Frasquilho, Sonia;
- Ostaszewski, Marek;
- Weber, Jos.;
- Longhino, Laura;
- Antony, Paul;
- Baumuratov, Aidos;
- Buttini, Manuel;
- Shannon, Kathleen M.;
- Balling, Rudi;
- Diederich, Nico J.
Publication type:
journal article
MINERVA API and plugins: opening molecular network analysis and visualization to the community.
Published in:
Bioinformatics, 2019, v. 35, n. 21, p. 4496, doi. 10.1093/bioinformatics/btz286
By:
- Hoksza, David;
- Gawron, Piotr;
- Ostaszewski, Marek;
- Smula, Ewa;
- Schneider, Reinhard
Publication type:
Article
MolArt: a molecular structure annotation and visualization tool.
Published in:
Bioinformatics, 2018, v. 34, n. 23, p. 4127, doi. 10.1093/bioinformatics/bty489
By:
- Hoksza, David;
- Gawron, Piotr;
- Ostaszewski, Marek;
- Schneider, Reinhard
Publication type:
Article
Platelet mitochondrial membrane potential in Parkinson's disease.
Published in:
Annals of Clinical & Translational Neurology, 2015, v. 2, n. 1, p. 67, doi. 10.1002/acn3.151
By:
- Antony, Paul M. A.;
- Boyd, Olga;
- Trefois, Christophe;
- Ammerlaan, Wim;
- Ostaszewski, Marek;
- Baumuratov, Aidos S.;
- Longhino, Laura;
- Antunes, Laurent;
- Koopman, Werner;
- Balling, Rudi;
- Diederich, Nico J.
Publication type:
Article
Exploration and comparison of molecular mechanisms across diseases using MINERVA Net.
Published in:
Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 2, p. 1, doi. 10.1002/pro.4565
By:
- Gawron, Piotr;
- Smula, Ewa;
- Schneider, Reinhard;
- Ostaszewski, Marek
Publication type:
Article

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