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Pedro: a configurable data entry tool for XML.
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- Bioinformatics, 2004, v. 20, n. 15, p. 2463, doi. 10.1093/bioinformatics/bth251
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- Article
Conceptual modelling of genomic information.
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- Bioinformatics, 2000, v. 16, n. 6, p. 548, doi. 10.1093/bioinformatics/16.6.548
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- Article
Correction: esyN: Network Building, Sharing and Publishing.
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- 2019
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- Correction Notice
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.
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- FEBS Letters, 2013, v. 587, n. 17, p. 2832, doi. 10.1016/j.febslet.2013.06.043
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- Article
Further developments towards a genome-scale metabolic model of yeast.
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- BMC Systems Biology, 2010, v. 4, p. 145, doi. 10.1186/1752-0509-4-145
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- Article
Similarity in expression accounts for correlated evolution of interacting proteins.
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- 2007
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- Abstract
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
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- BMC Systems Biology, 2007, v. 1, p. 34, doi. 10.1186/1752-0509-1-34
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- Publication type:
- Article
Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryptic hydrolysates of proteins following guanidination of lysine-containing peptides.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2000, v. 14, n. 21, p. 2070, doi. 10.1002/1097-0231(20001115)14:21<2070::AID-RCM133>3.0.CO;2-G
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- Article
Control analysis of the eukaryotic cell cycle using gene copy-number series in yeast tetraploids.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-744
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- Article
Neighborhood of the Spike Gene Is a Hotspot for Modular Intertypic Homologous and Nonhomologous Recombination in Coronavirus Genomes.
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- Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab292
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- Article
Chromatographic separations as a prelude to two-dimensional electrophoresis in proteomics analysis.
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- Proteomics, 2001, v. 1, n. 1, p. 42, doi. 10.1002/1615-9861(200101)1:1<42::AID-PROT42>3.0.CO;2-J
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- Publication type:
- Article
Enhancing the functionality of a microscale bioreactor system as an industrial process development tool for mammalian perfusion culture.
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- Biotechnology & Bioengineering, 2019, v. 116, n. 6, p. 1315, doi. 10.1002/bit.26946
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- Article
Extension of the yeast metabolic model to include iron metabolism and its use to estimate global levels of iron‐recruiting enzyme abundance from cofactor requirements.
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- Biotechnology & Bioengineering, 2019, v. 116, n. 3, p. 610, doi. 10.1002/bit.26905
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- Publication type:
- Article
Process development for the continuous production of heterologous proteins by the industrial yeast, Komagataella phaffii.
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- Biotechnology & Bioengineering, 2018, v. 115, n. 12, p. 2962, doi. 10.1002/bit.26846
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- Article
Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification.
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- Biotechnology & Bioengineering, 2017, v. 114, n. 11, p. 2605, doi. 10.1002/bit.26380
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- Article
Metabolic flux analysis for recombinant protein production by Pichia pastoris using dual carbon sources: Effects of methanol feeding rate.
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- Biotechnology & Bioengineering, 2010, v. 105, n. 2, p. 317, doi. 10.1002/bit.22543
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- Article
Chance and necessity in the evolution of minimal metabolic networks.
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- Nature, 2006, v. 440, n. 7084, p. 667, doi. 10.1038/nature04568
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- Article
Functional genomic hypothesis generation and experimentation by a robot scientist.
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- Nature, 2004, v. 427, n. 6971, p. 247, doi. 10.1038/nature02236
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- Article
Engineering evolution to study speciation in yeasts.
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- Nature, 2003, v. 422, n. 6927, p. 68, doi. 10.1038/nature01418
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- Publication type:
- Article
Comparative assessment of large-scale sets of protein—protein interactions.
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- Nature, 2002, v. 417, n. 6887, p. 399, doi. 10.1038/nature750
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- Article
A kingdom-specific protein domain HMM library for improved annotation of fungal genomes.
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- BMC Genomics, 2007, v. 8, p. 97, doi. 10.1186/1471-2164-8-97
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- Publication type:
- Article
Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network.
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- BMC Genomics, 2006, v. 7, p. 107, doi. 10.1186/1471-2164-7-107
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- Publication type:
- Article
Effect of dataset selection on the topological interpretation of protein interaction networks.
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- BMC Genomics, 2005, v. 6, p. 131, doi. 10.1186/1471-2164-6-131
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- Publication type:
- Article
Flux Balance Analysis of a Genome-Scale Yeast Model Constrained by Exometabolomic Data Allows Metabolic System Identification of Genetically Different Strains.
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- Biotechnology Progress, 2007, v. 23, n. 2, p. 320
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- Article
Selection of Microbial Mutants Tolerant To Extreme Environmental Stress Using Continuous Culture−Control Design.
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- Biotechnology Progress, 1999, v. 15, n. 6, p. 1115, doi. 10.1021/bp990084j
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- Article
Metabolic footprinting and systems biology: the medium is the message.
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- Nature Reviews Microbiology, 2005, v. 3, n. 7, p. 557, doi. 10.1038/nrmicro1177
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- Article
Metaheuristic approaches in biopharmaceutical process development data analysis.
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- Bioprocess & Biosystems Engineering, 2019, v. 42, n. 9, p. 1399, doi. 10.1007/s00449-019-02147-0
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- Article
A heuristic approach to handling missing data in biologics manufacturing databases.
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- Bioprocess & Biosystems Engineering, 2019, v. 42, n. 4, p. 657, doi. 10.1007/s00449-018-02059-5
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- Article
Fission stories: using PomBase to understand Schizosaccharomyces pombe biology.
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- Genetics, 2022, v. 220, n. 4, p. 1, doi. 10.1093/genetics/iyab222
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- Article
The Pivotal Role of Protein Phosphorylation in the Control of Yeast Central Metabolism.
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- G3: Genes | Genomes | Genetics, 2017, v. 7, n. 4, p. 1239, doi. 10.1534/g3.116.037218
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- Article
Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era.
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- BioEssays, 2004, v. 26, n. 1, p. 99, doi. 10.1002/bies.10385
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- Article
Functional Expression of Parasite Drug Targets and Their Human Orthologs in Yeast.
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- PLoS Neglected Tropical Diseases, 2011, v. 5, n. 10, p. 1, doi. 10.1371/journal.pntd.0001320
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- Article
Functional Expression of Parasite Drug Targets and Their Human Orthologs in Yeast.
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- PLoS Neglected Tropical Diseases, 2011, v. 5, n. 10, p. 1, doi. 10.1371/journal.pntd.0001320
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- Article
An integrated approach to characterize genetic interaction networks in yeast metabolism.
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- Nature Genetics, 2011, v. 43, n. 7, p. 656, doi. 10.1038/ng.846
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- Article
Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures.
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- Nature Genetics, 2008, v. 40, n. 1, p. 113, doi. 10.1038/ng.2007.49
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- Article
The Yeast GSK-3 Homologue Mck1 Is a Key Controller of Quiescence Entry and Chronological Lifespan.
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- PLoS Genetics, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.pgen.1005282
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- Article
Comparative Analysis of the Core Proteomes among the Pseudomonas Major Evolutionary Groups Reveals Species-Specific Adaptations for Pseudomonas aeruginosa and Pseudomonas chlororaphis.
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- Diversity (14242818), 2020, v. 12, n. 8, p. 289, doi. 10.3390/d12080289
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- Article
A prototrophic deletion mutant collection for yeast metabolomics and systems biology.
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- Nature Biotechnology, 2012, v. 30, n. 12, p. 1176, doi. 10.1038/nbt.2442
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- Article
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
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- Nature Biotechnology, 2007, v. 25, n. 10, p. 1127, doi. 10.1038/nbt1347
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- Article
A proposed framework for the description of plant metabolomics experiments and their results.
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- Nature Biotechnology, 2004, v. 22, n. 12, p. 1601, doi. 10.1038/nbt1041
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- Article
A common open representation of mass spectrometry data and its application to proteomics research.
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- Nature Biotechnology, 2004, v. 22, n. 11, p. 1459, doi. 10.1038/nbt1031
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- Publication type:
- Article
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
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- Nature Biotechnology, 2003, v. 21, n. 6, p. 692, doi. 10.1038/nbt823
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- Publication type:
- Article
A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.
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- Nature Biotechnology, 2001, v. 19, n. 1, p. 45, doi. 10.1038/83496
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- Publication type:
- Article
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-334
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- Publication type:
- Article
Data capture in bioinformatics: requirements and experiences with Pedro.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-183
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- Publication type:
- Article
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it.
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- BMC Bioinformatics, 2006, v. 7, p. 532, doi. 10.1186/1471-2105-7-532
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- Publication type:
- Article
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics.
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- BMC Bioinformatics, 2006, v. 7, p. 281, doi. 10.1186/1471-2105-7-281
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- Publication type:
- Article
Integrative investigation of metabolic and transcriptomic data.
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- BMC Bioinformatics, 2006, v. 7, p. 203, doi. 10.1186/1471-2105-7-203
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- Publication type:
- Article
Quantifying Two-Dimensional Filamentous and Invasive Growth Spatial Patterns in Yeast Colonies.
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- PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004070
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- Article
Handling variability and incompleteness of biological data by flexible nets: a case study for Wilson disease.
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- NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-017-0044-x
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- Article