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Transcript profiling of jasmonate-elicited Taxus cells reveals a β-phenylalanine-CoA ligase.
- Published in:
- Plant Biotechnology Journal, 2016, v. 14, n. 1, p. 85, doi. 10.1111/pbi.12359
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- Publication type:
- Article
Extinction and reinstatement of an operant responding maintained by food in different models of obesity.
- Published in:
- 2018
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- Publication type:
- journal article
Time-course and dynamics of obesity-related behavioral changes induced by energy-dense foods in mice.
- Published in:
- 2018
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- Publication type:
- journal article
Detecting and Comparing Non-Coding RNAs in the High-Throughput Era.
- Published in:
- International Journal of Molecular Sciences, 2013, v. 14, n. 8, p. 15423, doi. 10.3390/ijms140815423
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- Publication type:
- Article
Phylogenetic and functional characterization of water bears (Tardigrada) tubulins.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-31992-z
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- Publication type:
- Article
PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W339, doi. 10.1093/nar/gkw300
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- Publication type:
- Article
TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W3, doi. 10.1093/nar/gkv310
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- Publication type:
- Article
SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.
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- Nucleic Acids Research, 2014, v. 42, n. W1, p. W356, doi. 10.1093/nar/gku459
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- Publication type:
- Article
T-RMSD: a web server for automated fine-grained protein structural classification.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. W358, doi. 10.1093/nar/gkt383
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- Publication type:
- Article
Use of ChIP-Seq data for the design of a multiple promoter-alignment method.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 7, p. e52, doi. 10.1093/nar/gkr1292
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- Publication type:
- Article
BlastR—fast and accurate database searches for non-coding RNAs.
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- Nucleic Acids Research, 2011, v. 39, n. 16, p. 6886, doi. 10.1093/nar/gkr335
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- Publication type:
- Article
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W13, doi. 10.1093/nar/gkr245
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- Publication type:
- Article
R-Coffee: a method for multiple alignment of non-coding RNA.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 9, p. e52, doi. 10.1093/nar/gkn174
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- Publication type:
- Article
R-Coffee: a web server for accurately aligning noncoding RNA sequences.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W10, doi. 10.1093/nar/gkn278
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- Publication type:
- Article
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W645, doi. 10.1093/nar/gkm333
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- Publication type:
- Article
Large multiple sequence alignments with a root-to-leaf regressive method.
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- Nature Biotechnology, 2019, v. 37, n. 12, p. 1466, doi. 10.1038/s41587-019-0333-6
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- Publication type:
- Article
Nextflow enables reproducible computational workflows.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 4, p. 316, doi. 10.1038/nbt.3820
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- Publication type:
- Article
Fibroblast-Derived Induced Pluripotent Stem Cells Show No Common Retroviral Vector Insertions.
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- Stem Cells, 2009, v. 27, n. 2, p. 300, doi. 10.1634/stemcells.2008-0696
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- Publication type:
- Article
How Much Does It Cost? Optimization of Costs in Sequence Analysis of Social Science Data.
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- Sociological Methods & Research, 2009, v. 38, n. 1, p. 197, doi. 10.1177/0049124109342065
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- Publication type:
- Article
Highly significant improvement of protein sequence alignments with AlphaFold2.
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- Bioinformatics, 2022, v. 38, n. 22, p. 5007, doi. 10.1093/bioinformatics/btac625
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- Publication type:
- Article
Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.
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- Bioinformatics, 2021, v. 37, n. 11, p. 1506, doi. 10.1093/bioinformatics/btz082
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- Publication type:
- Article
A field guide for the compositional analysis of any-omics data.
- Published in:
- GigaScience, 2019, v. 8, n. 9, p. N.PAG, doi. 10.1093/gigascience/giz107
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- Publication type:
- Article
Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations.
- Published in:
- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0075542
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- Publication type:
- Article
Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words.
- Published in:
- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0027872
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- Publication type:
- Article
Principal Component Analysis of the Effects of Environmental Enrichment and (-)-epigallocatechin-3-gallate on Age-Associated Learning Deficits in a Mouse Model of Down Syndrome.
- Published in:
- Frontiers in Behavioral Neuroscience, 2015, v. 9, p. 1, doi. 10.3389/fnbeh.2015.00330
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- Publication type:
- Article
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2105-13-S4-S1
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- Publication type:
- Article
A user-friendly web portal for T-Coffee on supercomputers.
- Published in:
- 2011
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- Publication type:
- Product Review
Predicting phenotypic traits of prokaryotes from protein domain frequencies.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 481, doi. 10.1186/1471-2105-11-481
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- Publication type:
- Article
TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction.
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- Molecular Biology & Evolution, 2014, v. 31, n. 6, p. 1625, doi. 10.1093/molbev/msu117
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- Publication type:
- Article
The Rhizome of Life: The Sympatric Rickettsia felis Paradigm Demonstrates the Random Transfer of DNA Sequences.
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- Molecular Biology & Evolution, 2011, v. 28, n. 11, p. 3213, doi. 10.1093/molbev/msr239
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- Publication type:
- Article
Evolutionary Footprints Reveal Insights into Plant MicroRNA Biogenesis.
- Published in:
- Plant Cell, 2017, v. 29, n. 6, p. 1248, doi. 10.1105/tpc.17.00272
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- Publication type:
- Article
PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w600, doi. 10.1093/nar/gkl170
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- Publication type:
- Article
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w604, doi. 10.1093/nar/gkl092
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- Publication type:
- Article
M-Coffee: combining multiple sequence alignment methods with T-Coffee.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 6, p. 1692, doi. 10.1093/nar/gkl091
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- Publication type:
- Article
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w37, doi. 10.1093/nar/gkh382
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- Publication type:
- Article
CaspR: a web server for automated molecular replacement using homology modelling.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w606, doi. 10.1093/nar/gkh400
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- Publication type:
- Article
Tcoffee@igs: a web server for computing, evaluating and combining multiple sequence alignments.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3503, doi. 10.1093/nar/gkg522
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- Publication type:
- Article
A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3.
- Published in:
- Nucleic Acids Research, 2001, v. 29, n. 1, p. 55, doi. 10.1093/nar/29.1.55
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- Publication type:
- Article
RAGA: RNA sequence alignment by genetic algorithm.
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- Nucleic Acids Research, 1997, v. 25, n. 22, p. 4570, doi. 10.1093/nar/25.22.4570
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- Publication type:
- Article
SAGA: Sequence Alignment by Genetic Algorithm.
- Published in:
- Nucleic Acids Research, 1996, v. 24, n. 8, p. 1515, doi. 10.1093/nar/24.8.1515
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- Publication type:
- Article
Recent Evolutions of Multiple Sequence Alignment Algorithms.
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- PLoS Computational Biology, 2007, v. 3, n. 8, p. 1405, doi. 10.1371/journal.pcbi.0030123
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- Publication type:
- Article
Multiple sequence alignment modeling: methods and applications.
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- Briefings in Bioinformatics, 2016, v. 17, n. 6, p. 1009, doi. 10.1093/bib/bbv099
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- Publication type:
- Article
Expression Divergence of Chemosensory Genes between Drosophila sechellia and Its Sibling Species and Its Implications for Host Shift.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 10, p. 2843, doi. 10.1093/gbe/evv183
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- Publication type:
- Article
Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty.
- Published in:
- Systematic Biology, 2018, v. 67, n. 6, p. 997, doi. 10.1093/sysbio/syx096
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- Publication type:
- Article
Recovering accuracy methods for scalable consistency library.
- Published in:
- Journal of Supercomputing, 2015, v. 71, n. 5, p. 1833, doi. 10.1007/s11227-014-1362-z
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- Publication type:
- Article
Improving multiple sequence alignment biological accuracy through genetic algorithms.
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- Journal of Supercomputing, 2013, v. 65, n. 3, p. 1076, doi. 10.1007/s11227-012-0856-9
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- Publication type:
- Article
Performance analysis of computational approaches to solve Multiple Sequence Alignment.
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- Journal of Supercomputing, 2013, v. 64, n. 1, p. 69, doi. 10.1007/s11227-012-0751-4
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- Publication type:
- Article
Exploiting parallelism on progressive alignment methods.
- Published in:
- Journal of Supercomputing, 2011, v. 58, n. 2, p. 186, doi. 10.1007/s11227-009-0359-5
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- Publication type:
- Article
Breen et al. reply.
- Published in:
- Nature, 2013, v. 497, n. 7451, p. E2, doi. 10.1038/nature12220
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- Publication type:
- Article
Epistasis as the primary factor in molecular evolution.
- Published in:
- Nature, 2012, v. 490, n. 7421, p. 535, doi. 10.1038/nature11510
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- Publication type:
- Article