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Detection of herpes simplex virus DNA by in situ hybridization technique and polymerase chain reaction in Papanicolaou-stained cervicovaginal smears.
Published in:
Diagnostic Cytopathology, 2003, v. 29, n. 5, p. 246, doi. 10.1002/dc.10339
By:
- Nobuzo Iwa;
- Hideki Noguchi
Publication type:
Article
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences.
Published in:
Nucleic Acids Research, 2006, v. 34, n. 19, p. 5623, doi. 10.1093/nar/gkl723
By:
- Noguchi, Hideki;
- Park, Jungho;
- Takagi, Toshihisa
Publication type:
Article
Reply to “Has the chimpanzee Y chromosome been sequenced?”.
Published in:
2006
By:
- Kuroki, Yoko;
- Taylor, Todd D.;
- Noguchi, Hideki;
- Ito, Takehiko;
- Toyoda, Atsushi;
- Sakaki, Yoshiyuki;
- Fujiyama, Asao
Publication type:
Letter
Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway.
Published in:
Nature Genetics, 2006, v. 38, n. 2, p. 1, doi. 10.1038/ng1729
By:
- Kuroki, Yoko;
- Toyoda, Atsushi;
- Noguchi, Hideki;
- Taylor, Todd D.;
- Itoh, Takehiko;
- Dae-Soo Kim;
- Dae-Won Kim;
- Sang-Haeng Choi;
- Il-Chul Kim;
- Han Ho Choi;
- Yong Sung Kim;
- Satta, Yoko;
- Saitou, Naruya;
- Yamada, Tomoyuki;
- Morishita, Shinichi;
- Hattori, Masahira;
- Sakaki, Yoshiyuki;
- Hong-Seog Park;
- Fujiyama, Asao
Publication type:
Article
Mitochondrial and Plastid Genomes of the Colonial Green Alga <i>Gonium pectorale</i> Give Insights into the Origins of Organelle DNA Architecture within the Volvocales.
Published in:
PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0057177
By:
- Hamaji, Takashi;
- Smith, David R.;
- Noguchi, Hideki;
- Toyoda, Atsushi;
- Suzuki, Masahiro;
- Kawai-Toyooka, Hiroko;
- Fujiyama, Asao;
- Nishii, Ichiro;
- Marriage, Tara;
- Olson, Bradley J. S. C.;
- Nozaki, Hisayoshi
Publication type:
Article
A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem.
Published in:
PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030559
By:
- Hideto Takami;
- Hideki Noguchi;
- Yoshihiro Takaki;
- Ikuo Uchiyama;
- Atsushi Toyoda;
- Shinro Nishi;
- Gab-Joo Chee;
- Wataru Arai;
- Takuro Nunoura;
- Takehiko Itoh;
- Masahira Hattori;
- Ken Takai
Publication type:
Article
Human chromosome 11 DNA sequence and analysis including novel gene identification.
Published in:
Nature, 2006, v. 440, n. 7083, p. 497, doi. 10.1038/nature04632
By:
- Taylor, Todd D.;
- Noguchi, Hideki;
- Totoki, Yasushi;
- Toyoda, Atsushi;
- Kuroki, Yoko;
- Dewar, Ken;
- Lloyd, Christine;
- Itoh, Takehiko;
- Takeda, Tadayuki;
- Dae-Won Kim;
- Xinwei She;
- Barlow, Karen F.;
- Bloom, Toby;
- Bruford, Elspeth;
- Chang, Jean L.;
- Cuomo, Christina A.;
- Eichler, Evan;
- FitzGerald, Michael G.;
- Jaffe, David B.;
- LaButti, Kurt
Publication type:
Article
Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes.
Published in:
G3: Genes | Genomes | Genetics, 2016, v. 6, n. 5, p. 1179, doi. 10.1534/g3.115.026229
By:
- Takashi Hamaji;
- Yuko Mogi;
- Ferris, Patrick J.;
- Toshiyuki Mori;
- Shinya Miyagishima;
- Yukihiro Kabeya;
- Yoshiki Nishimura;
- Atsushi Toyoda;
- Hideki Noguchi;
- Asao Fujiyama;
- Olson, Bradley J. S. C.;
- Marriage, Tara N.;
- Ichiro Nishii;
- Umen, James G.;
- Hisayoshi Nozaki
Publication type:
Article
Genome sequence and analysis of the Japanese morning glory Ipomoea nil.
Published in:
Nature Communications, 2016, v. 7, n. 11, p. 13295, doi. 10.1038/ncomms13295
By:
- Hoshino, Atsushi;
- Jayakumar, Vasanthan;
- Nitasaka, Eiji;
- Toyoda, Atsushi;
- Noguchi, Hideki;
- Itoh, Takehiko;
- Shin-I, Tadasu;
- Minakuchi, Yohei;
- Koda, Yuki;
- Nagano, Atsushi J.;
- Yasugi, Masaki;
- Honjo, Mie N.;
- Kudoh, Hiroshi;
- Seki, Motoaki;
- Kamiya, Asako;
- Shiraki, Toshiyuki;
- Carninci, Piero;
- Asamizu, Erika;
- Nishide, Hiroyo;
- Tanaka, Sachiko
Publication type:
Article
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.
Published in:
Nature Communications, 2016, v. 7, n. 4, p. 11370, doi. 10.1038/ncomms11370
By:
- Hanschen, Erik R.;
- Marriage, Tara N.;
- Ferris, Patrick J.;
- Hamaji, Takashi;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Neme, Rafik;
- Noguchi, Hideki;
- Minakuchi, Yohei;
- Suzuki, Masahiro;
- Kawai-Toyooka, Hiroko;
- Smith, David R.;
- Sparks, Halle;
- Anderson, Jaden;
- Bakarić, Robert;
- Luria, Victor;
- Karger, Amir;
- Kirschner, Marc W.;
- Durand, Pierre M.;
- Michod, Richard E.
Publication type:
Article
Exploring the Limits and Causes of Plastid Genome Expansion in Volvocine Green Algae.
Published in:
Genome Biology & Evolution, 2018, v. 10, n. 9, p. 2248, doi. 10.1093/gbe/evy175
By:
- Gaouda, Hager;
- Hamaji, Takashi;
- Yamamoto, Kayoko;
- Kawai-Toyooka, Hiroko;
- Suzuki, Masahiro;
- Noguchi, Hideki;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Nozaki, Hisayoshi
Publication type:
Article
S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex.
Published in:
Nature, 2003, v. 424, n. 6952, p. 1078, doi. 10.1038/nature01900
By:
- Yuki Katou;
- Yutaka Kanoh;
- Masashige Bando;
- Hideki Noguchi;
- Hirokazu Tanaka;
- Toshihiko Ashikari;
- Katsunori Sugimoto;
- Katsuhiko Shirahige
Publication type:
Article
Horizontal transfer of a plasmid possessing mcr-1 marked with a single nucleotide mutation between Escherichia coli isolates from community residents.
Published in:
BMC Research Notes, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13104-022-06079-z
By:
- Yamamoto, Yoshimasa;
- Higashi, Ayano;
- Ikawa, Kanoko;
- Hoang, Hoa Thi Thanh;
- Yamaguchi, Takahiro;
- Kawahara, Ryuji;
- Noguchi, Hideki;
- Nguyen, Thang Nam;
- Khong, Diep Thi;
- Tran, Hoa Thi
Publication type:
Article
MoG+: a database of genomic variations across three mouse subspecies for biomedical research.
Published in:
Mammalian Genome, 2022, v. 33, n. 1, p. 31, doi. 10.1007/s00335-021-09933-w
By:
- Takada, Toyoyuki;
- Fukuta, Kentaro;
- Usuda, Daiki;
- Kushida, Tatsuya;
- Kondo, Shinji;
- Kawamoto, Shoko;
- Yoshiki, Atsushi;
- Obata, Yuichi;
- Fujiyama, Asao;
- Toyoda, Atsushi;
- Noguchi, Hideki;
- Shiroishi, Toshihiko;
- Masuya, Hiroshi
Publication type:
Article
Identification and characterization of new long conserved noncoding sequences in vertebrates.
Published in:
Mammalian Genome, 2008, v. 19, n. 10-12, p. 703, doi. 10.1007/s00335-008-9152-7
By:
- Sakuraba, Yoshiyuki;
- Kimura, Toru;
- Masuya, Hiroshi;
- Noguchi, Hideki;
- Sezutsu, Hideki;
- Takahasi, K.;
- Toyoda, Atsushi;
- Fukumura, Ryutaro;
- Murata, Takuya;
- Sakaki, Yoshiyuki;
- Yamamura, Masayuki;
- Wakana, Shigeharu;
- Noda, Tetsuo;
- Shiroishi, Toshihiko;
- Gondo, Yoichi
Publication type:
Article
Anisogamy evolved with a reduced sex-determining region in volvocine green algae.
Published in:
Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0019-5
By:
- Hamaji, Takashi;
- Kawai-Toyooka, Hiroko;
- Uchimura, Haruka;
- Suzuki, Masahiro;
- Noguchi, Hideki;
- Minakuchi, Yohei;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Miyagishima, Shin-ya;
- Umen, James G.;
- Nozaki, Hisayoshi
Publication type:
Article
MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features.
Published in:
Nucleic Acids Research, 2021, v. 49, n. 22, p. e130, doi. 10.1093/nar/gkab831
By:
- Kajitani, Rei;
- Noguchi, Hideki;
- Gotoh, Yasuhiro;
- Ogura, Yoshitoshi;
- Yoshimura, Dai;
- Okuno, Miki;
- Toyoda, Atsushi;
- Kuwahara, Tomomi;
- Hayashi, Tetsuya;
- Itoh, Takehiko
Publication type:
Article
Nintedanib induces gene expression changes in the lung of induced-rheumatoid arthritis–associated interstitial lung disease mice.
Published in:
PLoS ONE, 2022, v. 17, n. 6, p. 1, doi. 10.1371/journal.pone.0270056
By:
- Mikami, Shintaro;
- Miura, Yoko;
- Kondo, Shinji;
- Sakai, Kosuke;
- Nishimura, Hiroaki;
- Kyoyama, Hiroyuki;
- Moriyama, Gaku;
- Koyama, Nobuyuki;
- Noguchi, Hideki;
- Ohkubo, Hirotsugu;
- Kanazawa, Satoshi;
- Uematsu, Kazutsugu
Publication type:
Article
Mettl1-dependent m<sup>7</sup>G tRNA modification is essential for maintaining spermatogenesis and fertility in Drosophila melanogaster.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52389-0
By:
- Kaneko, Shunya;
- Miyoshi, Keita;
- Tomuro, Kotaro;
- Terauchi, Makoto;
- Tanaka, Ryoya;
- Kondo, Shu;
- Tani, Naoki;
- Ishiguro, Kei-Ichiro;
- Toyoda, Atsushi;
- Kamikouchi, Azusa;
- Noguchi, Hideki;
- Iwasaki, Shintaro;
- Saito, Kuniaki
Publication type:
Article
Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1278-x
By:
- Hideko Urushihara;
- Hidekazu Kuwayama;
- Kensuke Fukuhara;
- Takehiko Itoh;
- Hiroshi Kagoshima;
- Tadasu Shin-I;
- Atsushi Toyoda;
- Kazuyo Ohishi;
- Tateaki Taniguchi;
- Hideki Noguchi;
- Yoko Kuroki;
- Takashi Hata;
- Kyoko Uchi;
- Kurato Mohri;
- King, Jason S.;
- Insall, Robert H.;
- Yuji Kohara;
- Asao Fujiyama
Publication type:
Article
Single-cell transcriptomics of the goldfish retina reveals genetic divergence in the asymmetrically evolved subgenomes after allotetraploidization.
Published in:
Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-04351-3
By:
- Kon, Tetsuo;
- Fukuta, Kentaro;
- Chen, Zelin;
- Kon-Nanjo, Koto;
- Suzuki, Kota;
- Ishikawa, Masakazu;
- Tanaka, Hikari;
- Burgess, Shawn M.;
- Noguchi, Hideki;
- Toyoda, Atsushi;
- Omori, Yoshihiro
Publication type:
Article
Genome assembly of Genji firefly (Nipponoluciola cruciata) reveals novel luciferase-like luminescent proteins without peroxisome targeting signal.
Published in:
DNA Research, 2024, v. 31, n. 2, p. 1, doi. 10.1093/dnares/dsae006
By:
- Fukuta, Kentaro;
- Kato, Dai-ichiro;
- Maeda, Juri;
- Tsuruta, Atsuhiro;
- Suzuki, Hirobumi;
- Nagano, Yukio;
- Tsukamoto, Hisao;
- Niwa, Kazuki;
- Terauchi, Makoto;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Noguchi, Hideki
Publication type:
Article
Draft Genome Sequencing and Comparative Analysis of Aspergillus sojae NBRC4239.
Published in:
DNA Research, 2011, v. 18, n. 3, p. 165, doi. 10.1093/dnares/dsr009
By:
- Sato, Atsushi;
- Oshima, Kenshiro;
- Noguchi, Hideki;
- Ogawa, Masahiro;
- Takahashi, Tadashi;
- Oguma, Tetsuya;
- Koyama, Yasuji;
- Itoh, Takehiko;
- Hattori, Masahira;
- Hanya, Yoshiki
Publication type:
Article
MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes.
Published in:
DNA Research, 2008, v. 15, n. 6, p. 387, doi. 10.1093/dnares/dsn027
By:
- Noguchi, Hideki;
- Taniguchi, Takeaki;
- Itoh, Takehiko
Publication type:
Article
Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes.
Published in:
DNA Research, 2007, v. 14, n. 4, p. 169, doi. 10.1093/dnares/dsm018
By:
- Kurokawa, Ken;
- Itoh, Takehiko;
- Kuwahara, Tomomi;
- Oshima, Kenshiro;
- Toh, Hidehiro;
- Toyoda, Atsushi;
- Takami, Hideto;
- Morita, Hidetoshi;
- Sharma, Vineet K.;
- Srivastava, Tulika P.;
- Taylor, Todd D.;
- Noguchi, Hideki;
- Mori, Hiroshi;
- Ogura, Yoshitoshi;
- Ehrlich, Dusko S.;
- Itoh, Kikuji;
- Takagi, Toshihisa;
- Sakaki, Yoshiyuki;
- Hayashi, Tetsuya;
- Hattori, Masahira
Publication type:
Article

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