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Canalization of Tomato Fruit Metabolism.
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- Plant Cell, 2017, v. 29, n. 11, p. 2753, doi. 10.1105/tpc.17.00367
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- Article
Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population.
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- Plant Cell, 2015, v. 27, n. 7, p. 1839, doi. 10.1105/tpc.15.00208
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Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato.
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- Plant Cell, 2015, v. 27, n. 3, p. 485, doi. 10.1105/tpc.114.132266
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Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean.
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- Plant Cell, 2014, v. 26, n. 5, p. 1901, doi. 10.1105/tpc.114.124040
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Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales.
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- Plant Cell, 2013, v. 25, n. 6, p. 1917, doi. 10.1105/tpc.113.111039
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Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis.
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- Plant Cell, 2013, v. 25, n. 4, p. 1197, doi. 10.1105/tpc.112.108852
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- Article
Metabolic Fluxes in an Illuminated Arabidopsis Rosette.
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- Plant Cell, 2013, v. 25, n. 2, p. 694, doi. 10.1105/tpc.112.106989
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PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species.
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- Plant Cell, 2011, v. 23, n. 3, p. 895, doi. 10.1105/tpc.111.083667
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- Article
Gene regulatory network inference using fused LASSO on multiple data sets.
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- Scientific Reports, 2016, p. 20533, doi. 10.1038/srep20533
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- Article
DeFiNe: an optimisation-based method for robust disentangling of filamentous networks.
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- Scientific Reports, 2015, p. 18267, doi. 10.1038/srep18267
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- Article
Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics.
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- Scientific Reports, 2014, p. 1, doi. 10.1038/srep05067
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- Article
Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana.
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- Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.00386
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Integration of metabolomics data into metabolic networks.
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- Frontiers in Plant Science, 2015, v. 6, p. 1, doi. 10.3389/fpls.2015.00049
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- Article
Generalized framework for context-specific metabolic model extraction methods.
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- Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00491
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- Article
Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions.
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- Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00249
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- Article
Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions.
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- Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00249
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- Article
A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms.
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- Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00217
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- Article
Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1‐family protein.
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- Plant, Cell & Environment, 2021, v. 44, n. 10, p. 3398, doi. 10.1111/pce.14146
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Low‐temperature tolerance of the Antarctic species Deschampsia antarctica: A complex metabolic response associated with nutrient remobilization.
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- Plant, Cell & Environment, 2020, v. 43, n. 6, p. 1376, doi. 10.1111/pce.13737
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Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control.
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- Plant, Cell & Environment, 2015, v. 38, n. 8, p. 1457, doi. 10.1111/pce.12517
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Metabolic control and regulation of the tricarboxylic acid cycle in photosynthetic and heterotrophic plant tissues.
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- Plant, Cell & Environment, 2012, v. 35, n. 1, p. 1, doi. 10.1111/j.1365-3040.2011.02332.x
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- Article
Growth in fluctuating light buffers plants against photorespiratory perturbations.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42648-x
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- Article
Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40644-9
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Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40498-1
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Widening the landscape of transcriptional regulation of green algal photoprotection.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38183-4
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- Article
Light-independent regulation of algal photoprotection by CO<sub>2</sub> availability.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37800-6
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Data integration across conditions improves turnover number estimates and metabolic predictions.
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- Nature Communications, 2023, v. 14, p. 1, doi. 10.1038/s41467-023-37151-2
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- Article
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36517-w
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- Article
Functional centrality as a predictor of shifts in metabolic flux states.
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- BMC Research Notes, 2016, v. 9, p. 1, doi. 10.1186/s13104-016-2117-0
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Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots.
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- PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0196038
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Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-148
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- Article
Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures.
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- Journal of Integrative Plant Biology, 2014, v. 56, n. 9, p. 941, doi. 10.1111/jipb.12237
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PARROT: Prediction of enzyme abundances using protein-constrained metabolic models.
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- PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011549
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- Article
Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony.
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- PLoS Computational Biology, 2023, v. 19, n. 9, p. 1, doi. 10.1371/journal.pcbi.1011489
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- Article
Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection.
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- PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010832
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- Article
Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels.
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- Molecular Biology & Evolution, 2016, v. 33, n. 7, p. 1740, doi. 10.1093/molbev/msw050
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Genetic diversity of strawberry germplasm using metabolomic biomarkers.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-32212-9
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- Article
Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis.
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- New Phytologist, 2020, v. 225, n. 2, p. 754, doi. 10.1111/nph.16167
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Ensemble gene function prediction database reveals genes important for complex I formation in <italic>Arabidopsis thaliana</italic>.
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- New Phytologist, 2018, v. 217, n. 4, p. 1521, doi. 10.1111/nph.14921
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Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana.
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- New Phytologist, 2017, v. 213, n. 2, p. 900, doi. 10.1111/nph.14155
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Unravelling the in vivo regulation and metabolic role of the alternative oxidase pathway in C<sub>3</sub> species under photoinhibitory conditions.
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- New Phytologist, 2016, v. 212, n. 1, p. 66, doi. 10.1111/nph.14030
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Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions.
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- New Phytologist, 2011, v. 190, n. 2, p. 273, doi. 10.1111/j.1469-8137.2011.03674.x
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- Article
Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle.
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- Nature Communications, 2017, v. 8, n. 5, p. 15212, doi. 10.1038/ncomms15212
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A network property necessary for concentration robustness.
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- Nature Communications, 2016, v. 7, n. 10, p. 13255, doi. 10.1038/ncomms13255
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- Article
Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana.
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- Nature Communications, 2014, v. 5, n. 3, p. 3537, doi. 10.1038/ncomms4537
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- Article
Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana.
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- Nature Communications, 2012, v. 3, n. 12, p. 1319, doi. 10.1038/ncomms2333
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Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 20, p. 12087, doi. 10.3390/ijms232012087
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- Article
Comparative Analysis Based on Transcriptomics and Metabolomics Data Reveal Differences between Emmer and Durum Wheat in Response to Nitrogen Starvation.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4790, doi. 10.3390/ijms22094790
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Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 23, p. 9131, doi. 10.3390/ijms21239131
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A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 2, p. 1, doi. 10.3390/ijms21020474
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- Article