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Uberon, an integrative multi-species anatomy ontology.
- Published in:
- Genome Biology, 2012, v. 13, n. 1, p. 1, doi. 10.1186/gb-2012-13-1-r5
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- Publication type:
- Article
An evaluation of GPT models for phenotype concept recognition.
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- BMC Medical Informatics & Decision Making, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12911-024-02439-w
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- Article
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-513
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- Article
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-513
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- Article
A method for increasing expressivity of Gene Ontology annotations using a compositional approach.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-155
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- Article
Ontology based molecular signatures for immune cell types via gene expression analysis.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-263
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- Article
Logical Development of the Cell Ontology.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-6
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- Article
Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development.
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- BMC Bioinformatics, 2010, v. 11, p. 530, doi. 10.1186/1471-2105-11-530
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- Publication type:
- Article
SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing.
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- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01046-6
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- Publication type:
- Article
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bax105
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- Article
Modeling biochemical pathways in the gene ontology.
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- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw126
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- Article
Standardized description of scientific evidence using the Evidence Ontology (ECO).
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- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau075
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- Publication type:
- Article
A Logical Model of Homology for Comparative Biology.
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- Systematic Biology, 2020, v. 69, n. 2, p. 345, doi. 10.1093/sysbio/syz067
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- Publication type:
- Article
Phenopacket-tools: Building and validating GA4GH Phenopackets.
- Published in:
- PLoS ONE, 2023, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0285433
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- Article
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.
- Published in:
- Nature Biotechnology, 2007, v. 25, n. 11, p. 1251, doi. 10.1038/nbt1346
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- Article
On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.
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- PLoS Computational Biology, 2012, v. 8, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002386
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- Article
The Ontology of Biological Attributes (OBA)—computational traits for the life sciences.
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- Mammalian Genome, 2023, v. 34, n. 3, p. 364, doi. 10.1007/s00335-023-09992-1
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- Publication type:
- Article
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.
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- Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae104
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- Publication type:
- Article
An expectation–maximization framework for comprehensive prediction of isoform-specific functions.
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- Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad132
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- Publication type:
- Article
Reactome and the Gene Ontology: digital convergence of data resources.
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- Bioinformatics, 2021, v. 37, n. 19, p. 3343, doi. 10.1093/bioinformatics/btab325
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- Article
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
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- Bioinformatics, 2020, v. 36, n. 24, p. 5712, doi. 10.1093/bioinformatics/btaa622
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- Article
Representing Kidney Development Using the Gene Ontology.
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- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099864
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- Article
A Unified Anatomy Ontology of the Vertebrate Skeletal System.
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- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070
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- Article
Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation.
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- PLoS Biology, 2009, v. 7, n. 11, p. 1, doi. 10.1371/journal.pbio.1000247
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- Article
GA4GH Phenopackets: A Practical Introduction.
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- Advanced Genetics, 2023, v. 4, n. 1, p. 1, doi. 10.1002/ggn2.202200016
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- Article
An open source knowledge graph ecosystem for the life sciences.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03171-w
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- Article
An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03069-7
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- Publication type:
- Article
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.
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- Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00283-x
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- Article
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0097-6
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- Article
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
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- Article
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0067-z
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- Article
TermGenie - a web-application for pattern-based ontology class generation.
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- Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-48
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- Article
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
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- Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21
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- Article
The environment ontology: contextualising biological and biomedical entities.
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- Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-43
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- Article
Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge.
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- PLoS ONE, 2021, v. 16, n. 3, p. 1, doi. 10.1371/journal.pone.0231916
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- Article
Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies.
- Published in:
- 2023
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- Publication type:
- Correction Notice
Brain Data Standards - A method for building data-driven cell-type ontologies.
- Published in:
- Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-022-01886-2
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- Publication type:
- Article
Unifying the identification of biomedical entities with the Bioregistry.
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- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01807-3
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- Article
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D712, doi. 10.1093/nar/gkw1128
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- Article
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D1071, doi. 10.1093/nar/gku1011
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- Publication type:
- Article
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D966
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- Article
BioMake: a GNU make-compatible utility for declarative workflow management.
- Published in:
- Bioinformatics, 2017, v. 33, n. 21, p. 3502, doi. 10.1093/bioinformatics/btx306
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- Article
A strategy for building neuroanatomy ontologies.
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- 2012
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- Publication type:
- Correction notice
A strategy for building neuroanatomy ontologies.
- Published in:
- Bioinformatics, 2012, v. 28, n. 9, p. 1262, doi. 10.1093/bioinformatics/bts113
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- Publication type:
- Article
AmiGO: online access to ontology and annotation data.
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- Bioinformatics, 2009, v. 25, n. 2, p. 288
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- Publication type:
- Article
A Chado case study: an ontology-based modular schema for representing genome-associated biological information.
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- Bioinformatics, 2007, v. 23, n. 13, p. i337
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- Publication type:
- Article
A knowledge based approach to matching human neurodegenerative disease and animal models.
- Published in:
- Frontiers in Neuroinformatics, 2013, v. 7, p. 1, doi. 10.3389/fninf.2013.00007
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- Article
Phenotype‐driven approaches to enhance variant prioritization and diagnosis of rare disease.
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- Human Mutation, 2022, v. 43, n. 8, p. 1071, doi. 10.1002/humu.24380
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- Publication type:
- Article
Use of Model Organism and Disease Databases to Support Matchmaking for Human Disease Gene Discovery.
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- Human Mutation, 2015, v. 36, n. 10, p. 979, doi. 10.1002/humu.22857
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- Article
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery.
- Published in:
- NPJ Digital Medicine, 2019, v. 2, p. N.PAG, doi. 10.1038/s41746-019-0110-4
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- Publication type:
- Article