Found: 14

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  • A flexible cross-platform single-cell data processing pipeline.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34681-z
    By:
    • Battenberg, Kai;
    • Kelly, S. Thomas;
    • Ras, Radu Abu;
    • Hetherington, Nicola A.;
    • Hayashi, Makoto;
    • Minoda, Aki
    Publication type:
    Article

  • Impact of sequencing depth in ChIP-seq experiments.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. 9, p. 1, doi. 10.1093/nar/gku178
    By:
    • Youngsook L. Jung;
    • Luquette, Lovelace J.;
    • Ho, Joshua W. K.;
    • Ferrari, Francesco;
    • Tolstorukov, Michael;
    • Aki Minoda;
    • Issner, Robbyn;
    • Epstein, Charles B.;
    • Karpen, Gary H.;
    • Kuroda, Mitzi I.;
    • Park, Peter J.
    Publication type:
    Article

  • Impact of sequencing depth in ChIP-seq experiments.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. 9, p. e74, doi. 10.1093/nar/gku178
    By:
    • Jung, Youngsook L.;
    • Luquette, Lovelace J.;
    • Ho, Joshua W.K.;
    • Ferrari, Francesco;
    • Tolstorukov, Michael;
    • Minoda, Aki;
    • Issner, Robbyn;
    • Epstein, Charles B.;
    • Karpen, Gary H.;
    • Kuroda, Mitzi I.;
    • Park, Peter J.
    Publication type:
    Article

  • An assessment of histone-modification antibody quality.

    Published in:
    Nature Structural & Molecular Biology, 2011, v. 18, n. 1, p. 91, doi. 10.1038/nsmb.1972
    By:
    • Egelhofer, Thea A;
    • Minoda, Aki;
    • Klugman, Sarit;
    • Lee, Kyungjoon;
    • Kolasinska-Zwierz, Paulina;
    • Alekseyenko, Artyom A;
    • Cheung, Ming-Sin;
    • Day, Daniel S;
    • Gadel, Sarah;
    • Gorchakov, Andrey A;
    • Gu, Tingting;
    • Kharchenko, Peter V;
    • Kuan, Samantha;
    • Latorre, Isabel;
    • Linder-Basso, Daniela;
    • Luu, Ying;
    • Ngo, Queminh;
    • Perry, Marc;
    • Rechtsteiner, Andreas;
    • Riddle, Nicole C
    Publication type:
    Article

  • Activation of ILC2s through constitutive IFNγ signaling reduction leads to spontaneous pulmonary fibrosis.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43336-6
    By:
    • Otaki, Natsuko;
    • Motomura, Yasutaka;
    • Terooatea, Tommy;
    • Thomas Kelly, S.;
    • Mochizuki, Miho;
    • Takeno, Natsuki;
    • Koyasu, Shigeo;
    • Tamamitsu, Miu;
    • Sugihara, Fuminori;
    • Kikuta, Junichi;
    • Kitamura, Hideya;
    • Shiraishi, Yoshiki;
    • Miyanohara, Jun;
    • Nagano, Yuji;
    • Saita, Yuji;
    • Ogura, Takashi;
    • Asano, Koichiro;
    • Minoda, Aki;
    • Moro, Kazuyo
    Publication type:
    Article

  • Maternal Renal Dysfunction in Late Pregnancy in Twin and Singleton Pregnancies: Retrospective Study.

    Published in:
    Journal of Clinical Medicine, 2023, v. 12, n. 1, p. 90, doi. 10.3390/jcm12010090
    By:
    • Minoda, Aki;
    • Tsuda, Hiroyuki;
    • Masahashi, Yoshiki;
    • Nakamura, Takuto;
    • Suzuki, Miho;
    • Fukuhara, Nobuhiko;
    • Ito, Yumiko;
    • Tezuka, Atsuko;
    • Ando, Tomoko;
    • Mizuno, Kimio
    Publication type:
    Article

  • Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

    Published in:
    Nature, 2011, v. 471, n. 7339, p. 480, doi. 10.1038/nature09725
    By:
    • Kharchenko, Peter V.;
    • Alekseyenko, Artyom A.;
    • Schwartz, Yuri B.;
    • Minoda, Aki;
    • Riddle, Nicole C.;
    • Ernst, Jason;
    • Sabo, Peter J.;
    • Larschan, Erica;
    • Gorchakov, Andrey A.;
    • Gu, Tingting;
    • Linder-Basso, Daniela;
    • Plachetka, Annette;
    • Shanower, Gregory;
    • Tolstorukov, Michael Y.;
    • Luquette, Lovelace J.;
    • Xi, Ruibin;
    • Jung, Youngsook L.;
    • Park, Richard W.;
    • Bishop, Eric P.;
    • Canfield, Theresa K.
    Publication type:
    Article

  • OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages.

    Published in:
    Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43021-z
    By:
    • Watanabe, Kazuhide;
    • Liu, Ye;
    • Noguchi, Shuhei;
    • Murray, Madeleine;
    • Chang, Jen-Chien;
    • Kishima, Mami;
    • Nishimura, Hajime;
    • Hashimoto, Kosuke;
    • Minoda, Aki;
    • Suzuki, Harukazu
    Publication type:
    Article

  • Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties.

    Published in:
    BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09659-w
    By:
    • Das, Nando D.;
    • Chang, Jen-Chien;
    • Hon, Chung-Chau;
    • Kelly, S. Thomas;
    • Ito, Shinsuke;
    • Lizio, Marina;
    • Kaczkowski, Bogumil;
    • Watanabe, Hisami;
    • Katsushima, Keisuke;
    • Natsume, Atsushi;
    • Koseki, Haruhiko;
    • Kondo, Yutaka;
    • Minoda, Aki;
    • Umehara, Takashi
    Publication type:
    Article

  • Comparative analysis of metazoan chromatin organization.

    Published in:
    Nature, 2014, v. 512, n. 7515, p. 449, doi. 10.1038/nature13415
    By:
    • Ho, Joshua W. K.;
    • Jung, Youngsook L.;
    • Liu, Tao;
    • Alver, Burak H.;
    • Lee, Soohyun;
    • Ikegami, Kohta;
    • Sohn, Kyung-Ah;
    • Minoda, Aki;
    • Tolstorukov, Michael Y.;
    • Appert, Alex;
    • Parker, Stephen C. J.;
    • Gu, Tingting;
    • Kundaje, Anshul;
    • Riddle, Nicole C.;
    • Bishop, Eric;
    • Egelhofer, Thea A.;
    • Hu, Sheng'en Shawn;
    • Alekseyenko, Artyom A.;
    • Rechtsteiner, Andreas;
    • Asker, Dalal
    Publication type:
    Article

  • Priming of lineage-specifying genes by Bcl11b is required for lineage choice in post-selection thymocytes.

    Published in:
    Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00768-1
    By:
    • Satoshi Kojo;
    • Hirokazu Tanaka;
    • Endo, Takaho A.;
    • Sawako Muroi;
    • Ye Liu;
    • Wooseok Seo;
    • Mari Tenno;
    • Kiyokazu Kakugawa;
    • Yoshinori Naoe;
    • Krutula Nair;
    • Kazuyo Moro;
    • Yoshinori Katsuragi;
    • Akinori Kanai;
    • Toshiya Inaba;
    • Takeshi Egawa;
    • Venkatesh, Byrappa;
    • Aki Minoda;
    • Ryo Kominami;
    • Ichiro Taniuchi
    Publication type:
    Article

  • Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain.

    Published in:
    PLoS Genetics, 2012, v. 8, n. 9, p. 1, doi. 10.1371/journal.pgen.1002954
    By:
    • Riddle, Nicole C.;
    • Jung, Youngsook L.;
    • Gu, Tingting;
    • Alekseyenko, Artyom A.;
    • Asker, Dalal;
    • Hongxing Gui;
    • Kharchenko, Peter V.;
    • Minoda, Aki;
    • Plachetka, Annette;
    • Schwartz, Yuri B.;
    • Tolstorukov, Michael Y.;
    • Kuroda, Mitzi I.;
    • Pirrotta, Vincenzo;
    • Karpen, Gary H.;
    • Park, Peter J.;
    • Elgin, Sarah C. R.
    Publication type:
    Article

  • Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context.

    Published in:
    PLoS Genetics, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pgen.1002646
    By:
    • Alekseyenko, Artyom A.;
    • Ho, Joshua W. K.;
    • Shouyong Peng;
    • Gelbart, Marnie;
    • Tolstorukov, Michael Y.;
    • Plachetka, Annette;
    • Kharchenko, Peter V.;
    • Jung, Youngsook L.;
    • Gorchakov, Andrey A.;
    • Larschan, Erica;
    • Tingting Gu;
    • Minoda, Aki;
    • Riddle, Nicole C.;
    • Schwartz, Yuri B.;
    • Elgin, Sarah C. R.;
    • Karpen, Gary H.;
    • Pirrotta, Vincenzo;
    • Kuroda, Mitzi I.;
    • Park, Peter J.
    Publication type:
    Article

  • Food antigens suppress small intestinal tumorigenesis.

    Published in:
    Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1373766
    By:
    • Takaharu Sasaki;
    • Yuna Ota;
    • Yui Takikawa;
    • Terrooatea, Tommy;
    • Takashi Kanaya;
    • Masumi Takahashi;
    • Naoko Taguchi-Atarashi;
    • Naoko Tachibana;
    • Haruka Yabukami;
    • Surh, Charles D.;
    • Aki Minoda;
    • Kwang Soon Kim;
    • Hiroshi Ohno
    Publication type:
    Article