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A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31097-7
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- Publication type:
- Article
The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation.
- Published in:
- Environmental Microbiology Reports, 2014, v. 6, n. 4, p. 389, doi. 10.1111/1758-2229.12163
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- Publication type:
- Article
Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-69
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- Publication type:
- Article
Integration of Infant Metabolite, Genetic, and Islet Autoimmunity Signatures to Predict Type 1 Diabetes by Age 6 Years.
- Published in:
- Journal of Clinical Endocrinology & Metabolism, 2022, v. 107, n. 8, p. 2329, doi. 10.1210/clinem/dgac225
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- Publication type:
- Article
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics.
- Published in:
- Metabolites (2218-1989), 2024, v. 14, n. 2, p. 125, doi. 10.3390/metabo14020125
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- Publication type:
- Article
Correction: Nielson et al. Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. Metabolites 2023, 13 , 105.
- Published in:
- 2023
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- Publication type:
- Correction Notice
Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics.
- Published in:
- Metabolites (2218-1989), 2023, v. 13, n. 1, p. 105, doi. 10.3390/metabo13010105
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- Publication type:
- Article
Simulated Night-Shift Schedule Disrupts the Plasma Lipidome and Reveals Early Markers of Cardiovascular Disease Risk [Corrigendum].
- Published in:
- Nature & Science of Sleep, 2023, v. 15, p. 477, doi. 10.2147/NSS.S427012
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- Publication type:
- Article
Simulated Night-Shift Schedule Disrupts the Plasma Lipidome and Reveals Early Markers of Cardiovascular Disease Risk.
- Published in:
- Nature & Science of Sleep, 2022, v. 14, p. 981, doi. 10.2147/NSS.S363437
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- Publication type:
- Article
AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry–mass spectrometry.
- Published in:
- Bioinformatics, 2021, v. 37, n. 22, p. 4193, doi. 10.1093/bioinformatics/btab429
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- Publication type:
- Article
Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung.
- Published in:
- Scientific Reports, 2017, p. 40555, doi. 10.1038/srep40555
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- Publication type:
- Article
Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis.
- Published in:
- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123188
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- Publication type:
- Article
A Network Integration Approach to Predict Conserved Regulators Related to Pathogenicity of Influenza and SARS-CoV Respiratory Viruses.
- Published in:
- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0069374
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- Publication type:
- Article
A Multi-Omic View of Host-Pathogen-Commensal Interplay in <i>Salmonella</i>-Mediated Intestinal Infection.
- Published in:
- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0067155
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- Publication type:
- Article
Analysis of a macrophage carbamylated proteome reveals a function in post-translational modification crosstalk.
- Published in:
- Cell Communication & Signaling, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12964-023-01257-3
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- Publication type:
- Article
Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2471-2
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- Publication type:
- Article
Correction: yippee like 3 (ypel3) is a novel gene required for myelinating and perineurial glia development.
- Published in:
- 2020
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- Publication type:
- Correction Notice
yippee like 3 (ypel3) is a novel gene required for myelinating and perineurial glia development.
- Published in:
- PLoS Genetics, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pgen.1008841
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- Publication type:
- Article
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC- MS proteomics experiments.
- Published in:
- Proteomics, 2013, v. 13, n. 3/4, p. 493, doi. 10.1002/pmic.201200269
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- Publication type:
- Article
Interrogating the role of the milk microbiome in mastitis in the multi-omics era.
- Published in:
- Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1105675
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- Publication type:
- Article
MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-49
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- Publication type:
- Article
Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland.
- Published in:
- Microorganisms, 2022, v. 10, n. 8, p. 1653, doi. 10.3390/microorganisms10081653
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- Publication type:
- Article
An automated framework for NMR chemical shift calculations of small organic molecules.
- Published in:
- Journal of Cheminformatics, 2018, v. 10, n. 1, p. 1, doi. 10.1186/s13321-018-0305-8
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- Publication type:
- Article
Xanthohumol microbiome and signature in adults with Crohn's disease (the XMaS trial): a protocol for a phase II triple-masked, placebo-controlled clinical trial.
- Published in:
- 2022
- By:
- Publication type:
- journal article
Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.
- Published in:
- Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.21
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- Publication type:
- Article
A proteomic meta-analysis refinement of plasma extracellular vesicles.
- Published in:
- Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02748-1
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- Publication type:
- Article
Rapid remodeling of the soil lipidome in response to a drying-rewetting event.
- Published in:
- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-022-01427-4
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- Publication type:
- Article
Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS<sup>3</sup> versus multi-stage activation tandem mass spectrometry.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 19, p. 3027, doi. 10.1002/rcm.3703
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- Publication type:
- Article
Application of electron transfer dissociation mass spectrometry in analyses of non-enzymatically glycated peptides.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 5, p. 661, doi. 10.1002/rcm.2884
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- Publication type:
- Article
Dengue Virus Infection Perturbs Lipid Homeostasis in Infected Mosquito Cells.
- Published in:
- PLoS Pathogens, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.ppat.1002584
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- Publication type:
- Article
Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics.
- Published in:
- PLoS Pathogens, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.ppat.1000719
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- Publication type:
- Article
Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67878-7
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- Publication type:
- Article
Supernatants of intestinal luminal contents from mice fed high‐fat diet impair intestinal motility by injuring enteric neurons and smooth muscle cells.
- Published in:
- Neurogastroenterology & Motility, 2021, v. 33, n. 1, p. 1, doi. 10.1111/nmo.13990
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- Publication type:
- Article
Extending Classification Algorithms to Case-Control Studies.
- Published in:
- Biomedical Engineering & Computational Biology, 2019, v. 10, p. N.PAG, doi. 10.1177/1179597219858954
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- Publication type:
- Article
Effects of delayed NSAID administration after experimental eccentric contraction injury – A cellular and proteomics study.
- Published in:
- PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0172486
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- Publication type:
- Article
Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers.
- Published in:
- Journal of Diabetes, 2021, v. 13, n. 2, p. 143, doi. 10.1111/1753-0407.13093
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- Publication type:
- Article
The succinated proteome.
- Published in:
- Mass Spectrometry Reviews, 2014, v. 33, n. 2, p. 98, doi. 10.1002/mas.21382
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- Publication type:
- Article
Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery.
- Published in:
- NPJ Biofilms & Microbiomes, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41522-020-0122-5
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- Publication type:
- Article
Who Is Metabolizing What? Discovering Novel Biomolecules in the Microbiome and the Organisms Who Make Them.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2020, v. 2020, p. N.PAG, doi. 10.3389/fcimb.2020.00388
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- Publication type:
- Article
CFM-ID 4.0 – a web server for accurate MS-based metabolite identification.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. W1, p. W165, doi. 10.1093/nar/gkac383
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- Publication type:
- Article
BioTransformer 3.0—a web server for accurately predicting metabolic transformation products.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. W1, p. W115, doi. 10.1093/nar/gkac313
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- Publication type:
- Article
An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts.
- Published in:
- Journal of Cheminformatics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13321-022-00587-7
- By:
- Publication type:
- Article
Correction to: Xanthohumol microbiome and signature in healthy adults (the XMaS trial): a phase I triple-masked, placebo-controlled clinical trial.
- Published in:
- 2020
- By:
- Publication type:
- corrected article
Xanthohumol microbiome and signature in healthy adults (the XMaS trial): a phase I triple-masked, placebo-controlled clinical trial.
- Published in:
- 2020
- By:
- Publication type:
- journal article
Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites.
- Published in:
- Plant Direct, 2019, v. 3, n. 11, p. N.PAG, doi. 10.1002/pld3.179
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- Publication type:
- Article
Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms.
- Published in:
- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00209
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- Publication type:
- Article
Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation.
- Published in:
- Nature Protocols, 2021, v. 16, n. 8, p. 3737, doi. 10.1038/s41596-021-00566-6
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- Publication type:
- Article
Xanthohumol Microbiome and Signature in Healthy Adults (the XMaS Trial): Safety and Tolerability Results of a Phase I Triple‐Masked, Placebo‐Controlled Clinical Trial.
- Published in:
- Molecular Nutrition & Food Research, 2021, v. 65, n. 8, p. 1, doi. 10.1002/mnfr.202001170
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- Publication type:
- Article
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.
- Published in:
- Bioinformatics, 2017, v. 33, n. 17, p. 2715, doi. 10.1093/bioinformatics/btx305
- By:
- Publication type:
- Article
LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data.
- Published in:
- 2017
- By:
- Publication type:
- Product Review