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Intronic regions of plant genes potentially encode RDR (RNA-dependent RNA polymerase)-dependent small RNAs.
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- Journal of Experimental Botany, 2015, v. 66, n. 7, p. 1763, doi. 10.1093/jxb/eru542
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- Article
Is Argonaute 1 the only effective slicer of small RNA-mediated regulation of gene expression in plants?
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- Journal of Experimental Botany, 2014, v. 65, n. 22, p. 6293, doi. 10.1093/jxb/eru382
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- Article
Uncovering DCL1-dependent small RNA loci on plant genomes: a structure-based approach.
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- Journal of Experimental Botany, 2014, v. 65, n. 2, p. 395, doi. 10.1093/jxb/ert409
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- Article
High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism.
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- Journal of Experimental Botany, 2010, v. 61, n. 14, p. 3833, doi. 10.1093/jxb/erq209
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- Article
Methodological framework for functional characterization of plant microRNAs.
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- Journal of Experimental Botany, 2010, v. 61, n. 9, p. 2271, doi. 10.1093/jxb/erq087
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- Article
Degradome sequencing-based identification of phasiRNAs biogenesis pathways in Oryza sativa.
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- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07406-7
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- Article
Epigenetic performers in plants.
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- Development, Growth & Differentiation, 2010, v. 52, n. 6, p. 555, doi. 10.1111/j.1440-169X.2010.01192.x
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- Article
PlantNATsDB: a comprehensive database of plant natural antisense transcripts.
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- Nucleic Acids Research, 2012, p. D1187, doi. 10.1093/nar/gkr823
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- Article
PmiRKB: a plant microRNA knowledge base.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D181, doi. 10.1093/nar/gkq721
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- Article
Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs.
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- Rice (19398425), 2017, v. 10, n. 1, p. 1, doi. 10.1186/s12284-017-0177-y
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- Article
microRNAs participate in gene expression regulation and phytohormone cross-talk in barley embryo during seed development and germination.
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- BMC Plant Biology, 2017, v. 17, n. 1, p. 1, doi. 10.1186/s12870-017-1095-2
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- Article
A reversed framework for the identification of microRNA–target pairs in plants.
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- Briefings in Bioinformatics, 2013, v. 14, n. 3, p. 293, doi. 10.1093/bib/bbs040
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- Article
Toward microRNA-mediated gene regulatory networks in plants.
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- Briefings in Bioinformatics, 2011, v. 12, n. 6, p. 645, doi. 10.1093/bib/bbq091
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- Article
Succinyl-proteome profiling of a high taxol containing hybrid Taxus species (Taxus × media) revealed involvement of succinylation in multiple metabolic pathways.
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- Scientific Reports, 2016, p. 21764, doi. 10.1038/srep21764
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- Article
NATpipe: an integrative pipeline for systematical discovery of natural antisense transcripts (NATs) and phase-distributed nat-siRNAs from de novo assembled transcriptomes.
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- Scientific Reports, 2016, p. 21666, doi. 10.1038/srep21666
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- Article
A transcriptome-wide, organ-specific regulatory map of Dendrobium officinale, an important traditional Chinese orchid herb.
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- Scientific Reports, 2016, p. 18864, doi. 10.1038/srep18864
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- Article
miRNA Digger: a comprehensive pipeline for genome-wide novel miRNA mining.
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- Scientific Reports, 2016, p. 18901, doi. 10.1038/srep18901
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- Article
An organ‐specific transcriptomic atlas of the medicinal plant Bletilla striata: Protein‐coding genes, microRNAs, and regulatory networks.
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- Plant Genome, 2022, v. 15, n. 2, p. 1, doi. 10.1002/tpg2.20210
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- Article
Expression-Based Functional Investigation of the Organ-Specific MicroRNAs in Arabidopsis.
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- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050870
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- Article
Genome-Wide Identification of Reverse Complementary microRNA Genes in Plants.
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- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0046991
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- Article
Large-Scale Identification of Mirtrons in Arabidopsis and Rice.
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- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031163
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- Article
The Influence of ESR2 Gene Polymorphisms on Susceptibility to Hepatitis B Virus-Related Chronic Hepatitis, Liver Cirrhosis, and Hepatocellular Carcinoma.
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- Biochemical Genetics, 2024, v. 62, n. 5, p. 3946, doi. 10.1007/s10528-023-10636-x
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- Article
Bioactive compounds induced in Physalis angulata L. by methyl-jasmonate: an investigation of compound accumulation patterns and biosynthesis-related candidate genes.
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- Plant Molecular Biology, 2020, v. 103, n. 3, p. 341, doi. 10.1007/s11103-020-00996-y
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- Article
MepmiRDB: a medicinal plant microRNA database.
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- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz070
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- Article
sRNATargetDigger: A bioinformatics software for bidirectional identification of sRNA-target pairs with co-regulatory sRNAs information.
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- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0244480
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- Article
PRIN: a predicted rice interactome network.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 161, doi. 10.1186/1471-2105-12-161
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- Article
A microRNA-microRNA crosstalk network inferred from genome-wide single nucleotide polymorphism variants in natural populations of Arabidopsis thaliana.
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- Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.958520
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- Article
Organ-specific, integrated omics data-based study on the metabolic pathways of the medicinal plant Bletilla striata (Orchidaceae).
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- BMC Plant Biology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12870-021-03288-9
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- Article
Genome-wide survey of rice microRNAs and microRNA–target pairs in the root of a novel auxin-resistant mutant.
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- Planta: An International Journal of Plant Biology, 2009, v. 230, n. 5, p. 883, doi. 10.1007/s00425-009-0994-3
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- Article
The Function of LPR1 is Controlled by an Element in the Promoter and is Independent of SUMO E3 Ligase SIZ1 in Response to Low Pi Stress in Arabidopsis thaliana.
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- Plant & Cell Physiology, 2010, v. 51, n. 3, p. 380, doi. 10.1093/pcp/pcq004
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- Article
Transcriptome-wide identification and characterization of the copper and cadmium stress-responsive small RNAs and their targets in Arabidopsis thaliana.
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- Plant & Soil, 2018, v. 429, n. 1/2, p. 391, doi. 10.1007/s11104-018-3697-3
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- Article
Bioinformatics-assisted, integrated omics studies on medicinal plants.
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- Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1857, doi. 10.1093/bib/bbz132
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- Article
Investigating microRNA-mediated regulation of the nascent nuclear transcripts in plants: a bioinformatics workflow.
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- Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1317, doi. 10.1093/bib/bbx069
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- Article
A large family of Dscam genes with tandemly arrayed 5′ cassettes in Chelicerata.
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- Nature Communications, 2016, v. 7, n. 4, p. 11252, doi. 10.1038/ncomms11252
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- Article
An RNA architectural locus control region involved in Dscam mutually exclusive splicing.
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- Nature Communications, 2012, v. 3, n. 12, p. 1255, doi. 10.1038/ncomms2269
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- Article
A chelicerate-specific burst of nonclassical Dscam diversity.
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- BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-017-4420-0
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- Article
Dynamics of quality change in process of shiitake mushroom (Lentinus edodes) cooking.
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- Journal of Food Process Engineering, 2023, v. 46, n. 9, p. 1, doi. 10.1111/jfpe.14398
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- Article
Genome-wide identification and characterization of novel microRNAs in seed development of soybean.
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- Bioscience, Biotechnology & Biochemistry, 2019, v. 83, n. 2, p. 233, doi. 10.1080/09168451.2018.1536513
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- Article
High-Density Genetic Map Construction and Stem Total Polysaccharide Content-Related QTL Exploration for Chinese Endemic Dendrobium (Orchidaceae).
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- Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2018.00398
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- Article
Tracking microRNA Processing Signals by Degradome Sequencing Data Analysis.
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- Frontiers in Genetics, 2018, p. N.PAG, doi. 10.3389/fgene.2018.00546
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- Article
Classification of Transcription Boundary-Associated RNAs (TBARs) in Animals and Plants.
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- Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00168
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- Article
Transcriptome-Wide Discovery of PASRs (Promoter-Associated Small RNAs) and TASRs (Terminus-Associated Small RNAs) in Arabidopsis thaliana.
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- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169212
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- Article
The Regulatory Activities of Plant MicroRNAs: A More Dynamic Perspective.
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- Plant Physiology, 2011, v. 157, n. 4, p. 1583, doi. 10.1104/pp.111.187088
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- Article
PmiRDiscVali: an integrated pipeline for plant microRNA discovery and validation.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5478-7
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- Article
Expression and clinical significance of hsa_circ_0000778 in colorectal cancer.
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- Minerva Gastroenterology, 2024, v. 70, n. 2, p. 263, doi. 10.23736/S2724-5985.23.03398-3
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- Article
Construction of gene regulatory networks mediated by vegetative and reproductive stage-specific small RNAs in rice ( Oryza sativa).
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- New Phytologist, 2013, v. 197, n. 2, p. 441, doi. 10.1111/nph.12018
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- Article
The expanding roles of Argonautes: RNA interference, splicing and beyond.
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- Briefings in Functional Genomics, 2018, v. 17, n. 3, p. 191, doi. 10.1093/bfgp/elx045
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- Article
Construction of small RNA-mediated gene regulatory networks in the roots of rice (Oryza sativa).
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-510
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- Article
Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants.
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- BMC Genomics, 2012, v. 13, n. 1, p. 197, doi. 10.1186/1471-2164-13-197
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- Article
RNA editing of nuclear transcripts in Arabidopsis thaliana.
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- BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-S4-S12
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- Article