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ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis.
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- Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-01095-3
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- Article
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D517, doi. 10.1093/nar/gkw1101
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- Article
MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
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- Nucleic Acids Research, 2013, v. 41, p. D636, doi. 10.1093/nar/gks1194
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- Article
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.
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- Microbial Biotechnology, 2023, v. 16, n. 6, p. 1203, doi. 10.1111/1751-7915.14257
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- Article
Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement.
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- Microbial Biotechnology, 2018, v. 11, n. 1, p. 3, doi. 10.1111/1751-7915.13043
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- Article
Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.
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- Nature Biotechnology, 2006, v. 24, n. 6, p. 673, doi. 10.1038/nbt1212
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- Article
Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 10, p. 1985, doi. 10.1038/ismej.2013.90
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- Article
Experimental evolution of nodule intracellular infection in legume symbionts.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1367, doi. 10.1038/ismej.2013.24
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- Publication type:
- Article
A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus.
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- Molecular Microbiology, 2007, v. 63, n. 4, p. 1145, doi. 10.1111/j.1365-2958.2006.05570.x
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- Article
Evolutionary history and genetic parallelism affect correlated responses to evolution.
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- Molecular Ecology, 2013, v. 22, n. 12, p. 3292, doi. 10.1111/mec.12312
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- Article
Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.
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- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0127630
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- Article
Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?
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- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0108522
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- Publication type:
- Article
A Tribute to Disorder in the Genome of the Bloom-Forming Freshwater Cyanobacterium <i>Microcystis aeruginosa</i>.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0070747
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- Publication type:
- Article
Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024356
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- Article
Complete Genome Sequence of Crohn's Disease- Associated Adherent-Invasive E. coli Strain LF82.
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- PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0012714
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- Publication type:
- Article
The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments.
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- PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010433
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- Article
Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles.
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- PLoS ONE, 2008, v. 3, n. 3, p. 1, doi. 10.1371/journal.pone.0001805
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- Publication type:
- Article
Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis.
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- PLoS ONE, 2008, v. 3, n. 2, p. 1, doi. 10.1371/journal.pone.0001607
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- Article
Universal biases in protein composition of model prokaryotes.
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- Proteins, 2005, v. 60, n. 1, p. 27, doi. 10.1002/prot.20475
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- Article
A new network representation of the metabolism to detect chemical transformation modules.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0809-4
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- Article
Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes.
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- BMC Bioinformatics, 2002, v. 3, p. 5
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- Article
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
- Published in:
- 2021
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- Correction Notice
Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment.
- Published in:
- Molecular Biology & Evolution, 2015, v. 32, n. 11, p. 2897, doi. 10.1093/molbev/msv161
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- Article
16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage.
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- Microbial Ecology, 2015, v. 70, n. 1, p. 154, doi. 10.1007/s00248-014-0558-3
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- Article
Deciphering the evolution and metabolism of an anammox bacterium from a community genome.
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- 2006
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- Publication type:
- Letter
Frankia alni proteome under nitrogen-fixing and nitrogen-replete conditions.
- Published in:
- Physiologia Plantarum, 2007, v. 130, n. 3, p. 440, doi. 10.1111/j.1399-3054.2007.00859.x
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- Publication type:
- Article
Exploring the genomes of Frankia.
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- Physiologia Plantarum, 2007, v. 130, n. 3, p. 331, doi. 10.1111/j.1399-3054.2007.00918.x
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- Publication type:
- Article
MaGe: a microbial genome annotation system supported by synteny results.
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- Nucleic Acids Research, 2006, v. 34, n. 1, p. 53, doi. 10.1093/nar/gkj406
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- Article
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w471, doi. 10.1093/nar/gki498
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- Publication type:
- Article
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.
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- Nucleic Acids Research, 2004, v. 32, n. 19, p. 5766, doi. 10.1093/nar/gkh910
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- Article
AMIGene: Annotation of MIcrobial Genes.
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- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3723, doi. 10.1093/nar/gkg590
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- Article
Persistent biases in the amino acid composition of prokaryotic proteins.
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- BioEssays, 2006, v. 28, n. 7, p. 726, doi. 10.1002/bies.20431
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- Publication type:
- Article
A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.
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- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.10
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- Publication type:
- Article
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes.
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- PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002540
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- Publication type:
- Article
MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
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- Briefings in Bioinformatics, 2019, p. 1071, doi. 10.1093/bib/bbx113
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- Publication type:
- Article
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of P roteobacteria.
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- Environmental Microbiology, 2017, v. 19, n. 3, p. 1103, doi. 10.1111/1462-2920.13637
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- Article
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.
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- Environmental Microbiology, 2016, v. 18, n. 10, p. 3403, doi. 10.1111/1462-2920.13230
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- Article
Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity.
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- Environmental Microbiology, 2009, v. 11, n. 8, p. 1959, doi. 10.1111/j.1462-2920.2009.01918.x
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- Publication type:
- Article
Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease.
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- Genome Biology, 2014, v. 15, n. 11, p. 1, doi. 10.1186/s13059-014-0505-0
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- Article
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.
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- Genome Biology, 2013, v. 14, n. 2, p. 1, doi. 10.1186/gb-2013-14-2-r17
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- Publication type:
- Article
Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species.
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- Genome Biology & Evolution, 2016, v. 8, n. 1, p. 148, doi. 10.1093/gbe/evv248
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- Article
Attenuated Virulence and Genomic Reductive Evolution in the Entomopathogenic Bacterial Symbiont Species, Xenorhabdus poinarii.
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- Genome Biology & Evolution, 2014, v. 6, n. 6, p. 1495, doi. 10.1093/gbe/evu119
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- Publication type:
- Article
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26.
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- Genome Biology & Evolution, 2013, v. 5, n. 5, p. 934, doi. 10.1093/gbe/evt061
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- Article
Expansion of the SOS regulon of <italic>Vibrio cholerae</italic> through extensive transcriptome analysis and experimental validation.
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4716-8
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- Publication type:
- Article
Exploring the Penicillium marneffei genome.
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- Archives of Microbiology, 2003, v. 179, n. 5, p. 339, doi. 10.1007/s00203-003-0533-8
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- Publication type:
- Article
Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00227
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- Publication type:
- Article
Experimental Evolution of a Plant Pathogen into a Legume Symbiont.
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- PLoS Biology, 2010, v. 8, n. 1, p. 1, doi. 10.1371/journal.pbio.1000280
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- Publication type:
- Article
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
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- Extremophiles, 2016, v. 20, n. 3, p. 301, doi. 10.1007/s00792-016-0822-1
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- Article
Imagene: an integrated computer environment for sequence annotation and analysis.
- Published in:
- Bioinformatics, 1999, v. 15, n. 1, p. 2, doi. 10.1093/bioinformatics/15.1.2
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- Publication type:
- Article
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D579, doi. 10.1093/nar/gkz926
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- Publication type:
- Article