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Disentangling the genetic basis of rhizosphere microbiome assembly in tomato.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30849-9
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- Article
A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters.
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- BMC Research Notes, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13104-019-4222-3
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- Article
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools.
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- Metabolites (2218-1989), 2019, v. 9, n. 7, p. 144, doi. 10.3390/metabo9070144
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- Article
Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L.
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- Frontiers in Plant Science, 2019, p. 1, doi. 10.3389/fpls.2019.00846
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- Article
The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D625, doi. 10.1093/nar/gky1060
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- Article
antiSMASH 4.0--improvements in chemistry prediction and gene cluster boundary identification.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W36, doi. 10.1093/nar/gkx319
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- Publication type:
- Article
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W55, doi. 10.1093/nar/gkx305
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- Article
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D555, doi. 10.1093/nar/gkw960
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- Article
antiSMASH 3.0--a comprehensive resource for the genome mining of biosynthetic gene clusters.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W237, doi. 10.1093/nar/gkv437
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- Article
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers.
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- Nucleic Acids Research, 2013, v. 41, p. W204, doi. 10.1093/nar/gkt449
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- Article
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W362, doi. 10.1093/nar/gkr323
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- Article
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W339, doi. 10.1093/nar/gkr466
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- Article
Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus.
- Published in:
- Microbial Biotechnology, 2011, v. 4, n. 2, p. 300, doi. 10.1111/j.1751-7915.2010.00226.x
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- Article
gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota.
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- Nature Biotechnology, 2023, v. 41, n. 10, p. 1416, doi. 10.1038/s41587-023-01675-1
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- Article
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
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- Nature Biotechnology, 2022, v. 40, n. 5, p. 711, doi. 10.1038/s41587-021-01130-z
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- Article
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters.
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- GigaScience, 2021, v. 10, n. 1, p. 1, doi. 10.1093/gigascience/giaa154
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- Article
Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae.
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- Plant Journal, 2019, v. 98, n. 6, p. 1134, doi. 10.1111/tpj.14292
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- Article
bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46302-y
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- Article
MultiMetEval: Comparative and Multi-Objective Analysis of Genome-Scale Metabolic Models.
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- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051511
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- Article
CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05311-2
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- Article
Detecting Sequence Homology at the Gene Cluster Level with MultiGeneBlast.
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- Molecular Biology & Evolution, 2013, v. 30, n. 5, p. 1218, doi. 10.1093/molbev/mst025
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- Article
Author Correction: The planctomycete Stieleria maiorica Mal15<sup>T</sup> employs stieleriacines to alter the species composition in marine biofilms.
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- 2020
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- Correction Notice
Author Correction: The planctomycete Stieleria maiorica Mal15<sup>T</sup> employs stieleriacines to alter the species composition in marine biofilms.
- Published in:
- 2020
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- Publication type:
- Correction Notice
The planctomycete Stieleria maiorica Mal15<sup>T</sup> employs stieleriacines to alter the species composition in marine biofilms.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-0993-2
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- Publication type:
- Article
The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0993-2
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- Publication type:
- Article
Microbial assimilatory sulfate reduction-mediated H<sub>2</sub>S: an overlooked role in Crohn's disease development.
- Published in:
- Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01873-2
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- Article
The role of strigolactones in P deficiency induced transcriptional changes in tomato roots.
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- BMC Plant Biology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12870-021-03124-0
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- Article
A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis.
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- PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004016
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- Article
Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products.
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- PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003822
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- Article
Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lantibiotics.
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- PLoS Biology, 2020, v. 18, n. 12, p. 1, doi. 10.1371/journal.pbio.3001026
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- Article
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters.
- Published in:
- Briefings in Bioinformatics, 2019, p. 1103, doi. 10.1093/bib/bbx146
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- Article
Enhanced correlation-based linking of biosynthetic gene clusters to their metabolic products through chemical class matching.
- Published in:
- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-022-01444-3
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- Article
Genome-wide analysis of bacterial determinants of plant growth promotion and induced systemic resistance by Pseudomonas fluorescens.
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- Environmental Microbiology, 2017, v. 19, n. 11, p. 4638, doi. 10.1111/1462-2920.13927
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- Article
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea.
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- Environmental Microbiology, 2008, v. 10, n. 11, p. 3164, doi. 10.1111/j.1462-2920.2008.01724.x
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- Article
Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3966-1
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- Article
The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol.
- Published in:
- New Phytologist, 2022, v. 235, n. 5, p. 1884, doi. 10.1111/nph.18272
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- Article
Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae.
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- New Phytologist, 2020, v. 227, n. 4, p. 1109, doi. 10.1111/nph.16338
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- Article
Evolution and Diversity of Biosynthetic Gene Clusters in Fusarium.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01158
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- Article
Computational approaches to natural product discovery.
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- Nature Chemical Biology, 2015, v. 11, n. 9, p. 639, doi. 10.1038/nchembio.1884
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- Article
Minimum Information about a Biosynthetic Gene cluster.
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- Nature Chemical Biology, 2015, v. 11, n. 9, p. 625, doi. 10.1038/nchembio.1890
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- Article
iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures.
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- PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010462
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- Article
Computational tools for the synthetic design of biochemical pathways.
- Published in:
- Nature Reviews Microbiology, 2012, v. 10, n. 3, p. 191, doi. 10.1038/nrmicro2717
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- Article
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms.
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- Nature Reviews Microbiology, 2011, v. 9, n. 2, p. 131, doi. 10.1038/nrmicro2478
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- Publication type:
- Article
Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters.
- Published in:
- Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0333-6
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- Publication type:
- Article
Extracting the GEMs: Genotype, Environment, and Microbiome Interactions Shaping Host Phenotypes.
- Published in:
- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.574053
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- Article
The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D586, doi. 10.1093/nar/gkad984
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- Article
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. W1, p. W46, doi. 10.1093/nar/gkad344
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- Article
The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. W1, p. W263, doi. 10.1093/nar/gkab353
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- Article
antiSMASH 6.0: improving cluster detection and comparison capabilities.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. W1, p. W29, doi. 10.1093/nar/gkab335
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- Article
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D639, doi. 10.1093/nar/gkaa978
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- Article