Found: 22

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  • Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression.

    Published in:
    2011
    By:
    • Wartman, Lukas D.;
    • Larson, David E.;
    • Zhifu Xiang;
    • Li Ding;
    • Ken Chen;
    • Ling Lin;
    • Cahan, Patrick;
    • Klco, Jeffery M.;
    • Welch, John S.;
    • Cheng Li;
    • Payton, Jacqueline E.;
    • Uy, Geoffrey L.;
    • Varghese, Nobish;
    • Ries, Rhonda E.;
    • Hoock, Mieke;
    • Koboldt, Daniel C.;
    • McLellan, Michael D.;
    • Schmidt, Heather;
    • Fulton, Robert S.;
    • Abbott, Rachel M.
    Publication type:
    journal article

  • Optimized polyepitope neoantigen DNA vaccines elicit neoantigen-specific immune responses in preclinical models and in clinical translation.

    Published in:
    Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00872-4
    By:
    • Li, Lijin;
    • Zhang, Xiuli;
    • Wang, Xiaoli;
    • Kim, Samuel W.;
    • Herndon, John M.;
    • Becker-Hapak, Michelle K.;
    • Carreno, Beatriz M.;
    • Myers, Nancy B.;
    • Sturmoski, Mark A.;
    • McLellan, Michael D.;
    • Miller, Christopher A.;
    • Johanns, Tanner M.;
    • Tan, Benjamin R.;
    • Dunn, Gavin P.;
    • Fleming, Timothy P.;
    • Hansen, Ted H.;
    • Goedegebuure, S. Peter;
    • Gillanders, William E.
    Publication type:
    Article

  • Age-related mutations associated with clonal hematopoietic expansion and malignancies.

    Published in:
    Nature Medicine, 2014, v. 20, n. 12, p. 1472, doi. 10.1038/nm.3733
    By:
    • Xie, Mingchao;
    • Lu, Charles;
    • Wang, Jiayin;
    • McLellan, Michael D;
    • Johnson, Kimberly J;
    • Wendl, Michael C;
    • McMichael, Joshua F;
    • Schmidt, Heather K;
    • Yellapantula, Venkata;
    • Miller, Christopher A;
    • Ozenberger, Bradley A;
    • Welch, John S;
    • Link, Daniel C;
    • Walter, Matthew J;
    • Mardis, Elaine R;
    • Dipersio, John F;
    • Chen, Feng;
    • Wilson, Richard K;
    • Ley, Timothy J;
    • Ding, Li
    Publication type:
    Article

  • Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes.

    Published in:
    Nature Genetics, 2012, v. 44, n. 1, p. 53, doi. 10.1038/ng.1031
    By:
    • Graubert, Timothy A;
    • Shen, Dong;
    • Ding, Li;
    • Okeyo-Owuor, Theresa;
    • Lunn, Cara L;
    • Shao, Jin;
    • Krysiak, Kilannin;
    • Harris, Christopher C;
    • Koboldt, Daniel C;
    • Larson, David E;
    • McLellan, Michael D;
    • Dooling, David J;
    • Abbott, Rachel M;
    • Fulton, Robert S;
    • Schmidt, Heather;
    • Kalicki-Veizer, Joelle;
    • O'Laughlin, Michelle;
    • Grillot, Marcus;
    • Baty, Jack;
    • Heath, Sharon
    Publication type:
    Article

  • BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.

    Published in:
    Nature Methods, 2009, v. 6, n. 9, p. 677, doi. 10.1038/nmeth.1363
    By:
    • Chen, Ken;
    • Wallis, John W.;
    • McLellan, Michael D.;
    • Larson, David E.;
    • Kalicki, Joelle M.;
    • Pohl, Craig S.;
    • McGrath, Sean D.;
    • Wendl, Michael C.;
    • Qunyuan Zhang;
    • Locke, Devin P.;
    • Xiaoqi Shi;
    • Fulton, Robert S.;
    • Ley, Timothy J.;
    • Wilson, Richard K.;
    • Li Ding;
    • Mardis, Elaine R.
    Publication type:
    Article

  • Genome remodelling in a basal-like breast cancer metastasis and xenograft.

    Published in:
    Nature, 2010, v. 464, n. 7291, p. 999, doi. 10.1038/nature08989
    By:
    • Li Ding;
    • Ellis, Matthew J.;
    • Shunqiang Li;
    • Larson, David E.;
    • Ken Chen;
    • Wallis, John W.;
    • Harris, Christopher C.;
    • McLellan, Michael D.;
    • Fulton, Robert S.;
    • Fulton, Lucinda L.;
    • Abbott, Rachel M.;
    • Hoog, Jeremy;
    • Dooling, David J.;
    • Koboldt, Daniel C.;
    • Schmidt, Heather;
    • Kalicki, Joelle;
    • Qunyuan Zhang;
    • Lei Chen;
    • Ling Lin;
    • Wendl, Michael C.
    Publication type:
    Article

  • DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

    Published in:
    Nature, 2008, v. 456, n. 7218, p. 66, doi. 10.1038/nature07485
    By:
    • Ley, Timothy J.;
    • Mardis, Elaine R.;
    • Ding, Li;
    • Fulton, Bob;
    • McLellan, Michael D.;
    • Chen, Ken;
    • Dooling, David;
    • Dunford-Shore, Brian H.;
    • McGrath, Sean;
    • Hickenbotham, Matthew;
    • Cook, Lisa;
    • Abbott, Rachel;
    • Larson, David E.;
    • Koboldt, Dan C.;
    • Pohl, Craig;
    • Smith, Scott;
    • Hawkins, Amy;
    • Abbott, Scott;
    • Locke, Devin;
    • Hillier, LaDeana W.
    Publication type:
    Article

  • Somatic mutations affect key pathways in lung adenocarcinoma.

    Published in:
    Nature, 2008, v. 455, n. 7216, p. 1069, doi. 10.1038/nature07423
    By:
    • Li Ding;
    • Getz, Gad;
    • Wheeler, David A.;
    • Mardis, Elaine R.;
    • McLellan, Michael D.;
    • Cibulskis, Kristian;
    • Sougnez, Carrie;
    • Greulich, Heidi;
    • Muzny, Donna M.;
    • Morgan, Margaret B.;
    • Fulton, Lucinda;
    • Fulton, Robert S.;
    • Qunyuan Zhang;
    • Wendl, Michael C.;
    • Lawrence, Michael S.;
    • Larson, David E.;
    • Chen, Ken;
    • Dooling, David J.;
    • Sabo, Aniko;
    • Hawes, Alicia C.
    Publication type:
    Article

  • Patterns and functional implications of rare germline variants across 12 cancer types.

    Published in:
    Nature Communications, 2015, v. 6, n. 12, p. 10086, doi. 10.1038/ncomms10086
    By:
    • Lu, Charles;
    • Xie, Mingchao;
    • Wendl, Michael C.;
    • Wang, Jiayin;
    • McLellan, Michael D.;
    • Leiserson, Mark D. M.;
    • Huang, Kuan-lin;
    • Wyczalkowski, Matthew A.;
    • Jayasinghe, Reyka;
    • Banerjee, Tapahsama;
    • Ning, Jie;
    • Tripathi, Piyush;
    • Zhang, Qunyuan;
    • Niu, Beifang;
    • Ye, Kai;
    • Schmidt, Heather K.;
    • Fulton, Robert S.;
    • McMichael, Joshua F.;
    • Batra, Prag;
    • Kandoth, Cyriac
    Publication type:
    Article

  • Integrated analysis of germline and somatic variants in ovarian cancer.

    Published in:
    Nature Communications, 2014, v. 5, n. 1, p. 3156, doi. 10.1038/ncomms4156
    By:
    • Kanchi, Krishna L.;
    • Johnson, Kimberly J.;
    • Lu, Charles;
    • McLellan, Michael D.;
    • Leiserson, Mark D. M.;
    • Wendl, Michael C.;
    • Zhang, Qunyuan;
    • Koboldt, Daniel C.;
    • Xie, Mingchao;
    • Kandoth, Cyriac;
    • McMichael, Joshua F.;
    • Wyczalkowski, Matthew A.;
    • Larson, David E.;
    • Schmidt, Heather K.;
    • Miller, Christopher A.;
    • Fulton, Robert S.;
    • Spellman, Paul T.;
    • Mardis, Elaine R.;
    • Druley, Todd E.;
    • Graubert, Timothy A.
    Publication type:
    Article

  • Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif.

    Published in:
    Nature Communications, 2013, v. 4, n. 11, p. 2730, doi. 10.1038/ncomms3730
    By:
    • Hamilton, Mark P.;
    • Rajapakshe, Kimal;
    • Hartig, Sean M.;
    • Reva, Boris;
    • McLellan, Michael D.;
    • Kandoth, Cyriac;
    • Ding, Li;
    • Zack, Travis I.;
    • Gunaratne, Preethi H.;
    • Wheeler, David A.;
    • Coarfa, Cristian;
    • McGuire, Sean E.
    Publication type:
    Article

  • BreakTrans: uncovering the genomic architecture of gene fusions.

    Published in:
    Genome Biology, 2013, v. 14, n. 8, p. R87, doi. 10.1186/gb-2013-14-8-r87
    By:
    • Ken Chen;
    • Navin, Nicholas E;
    • Yong Wang;
    • Schmidt, Heather K;
    • Wallis, John W;
    • Niu, Beifang;
    • Xian Fan;
    • Hao Zhao;
    • McLellan, Michael D;
    • Hoadley, Katherine A;
    • Mardis, Elaine R;
    • Ley, Timothy J;
    • Perou, Charles M;
    • Wilson, Richard K;
    • Li Ding
    Publication type:
    Article

  • HPV-EM: an accurate HPV detection and genotyping EM algorithm.

    Published in:
    Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71300-7
    By:
    • Inkman, Matthew J.;
    • Jayachandran, Kay;
    • Ellis, Thomas M.;
    • Ruiz, Fiona;
    • McLellan, Michael D.;
    • Miller, Christopher A.;
    • Wu, Yufeng;
    • Ojesina, Akinyemi I.;
    • Schwarz, Julie K.;
    • Zhang, Jin
    Publication type:
    Article

  • Mutational landscape and significance across 12 major cancer types.

    Published in:
    Nature, 2013, v. 502, n. 7471, p. 333, doi. 10.1038/nature12634
    By:
    • Kandoth, Cyriac;
    • McLellan, Michael D.;
    • Vandin, Fabio;
    • Ye, Kai;
    • Niu, Beifang;
    • Lu, Charles;
    • Xie, Mingchao;
    • Zhang, Qunyuan;
    • McMichael, Joshua F.;
    • Wyczalkowski, Matthew A.;
    • Leiserson, Mark D. M.;
    • Miller, Christopher A.;
    • Welch, John S.;
    • Walter, Matthew J.;
    • Wendl, Michael C.;
    • Ley, Timothy J.;
    • Wilson, Richard K.;
    • Raphael, Benjamin J.;
    • Ding, Li
    Publication type:
    Article

  • Integrated genomic characterization of endometrial carcinoma.

    Published in:
    Nature, 2013, v. 497, n. 7447, p. 67, doi. 10.1038/nature12113
    By:
    • Getz, Gad;
    • Gabriel, Stacey B.;
    • Cibulskis, Kristian;
    • Lander, Eric;
    • Sivachenko, Andrey;
    • Sougnez, Carrie;
    • Lawrence, Mike;
    • Kandoth, Cyriac;
    • Dooling, David;
    • Fulton, Robert;
    • Fulton, Lucinda;
    • Kalicki-Veizer, Joelle;
    • McLellan, Michael D.;
    • O'Laughlin, Michelle;
    • Schmidt, Heather;
    • Wilson, Richard K.;
    • Ye, Kai;
    • Ding, Li;
    • Mardis, Elaine R.;
    • Ally, Adrian
    Publication type:
    Article

  • Comprehensive molecular portraits of human breast tumours.

    Published in:
    Nature, 2012, v. 490, n. 7418, p. 61, doi. 10.1038/nature11412
    By:
    • Koboldt, Daniel C.;
    • Fulton, Robert S.;
    • McLellan, Michael D.;
    • Schmidt, Heather;
    • Kalicki-Veizer, Joelle;
    • McMichael, Joshua F.;
    • Fulton, Lucinda L.;
    • Dooling, David J.;
    • Ding, Li;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Ally, Adrian;
    • Balasundaram, Miruna;
    • Butterfield, Yaron S. N.;
    • Carlsen, Rebecca;
    • Carter, Candace;
    • Chu, Andy;
    • Chuah, Eric;
    • Chun, Hye-Jung E.;
    • Coope, Robin J. N.
    Publication type:
    Article

  • Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.

    Published in:
    Nature, 2012, v. 481, n. 7382, p. 506, doi. 10.1038/nature10738
    By:
    • Ding, Li;
    • Ley, Timothy J.;
    • Larson, David E.;
    • Miller, Christopher A.;
    • Koboldt, Daniel C.;
    • Welch, John S.;
    • Ritchey, Julie K.;
    • Young, Margaret A.;
    • Lamprecht, Tamara;
    • McLellan, Michael D.;
    • McMichael, Joshua F.;
    • Wallis, John W.;
    • Lu, Charles;
    • Shen, Dong;
    • Harris, Christopher C.;
    • Dooling, David J.;
    • Fulton, Robert S.;
    • Fulton, Lucinda L.;
    • Chen, Ken;
    • Schmidt, Heather
    Publication type:
    Article

  • Re-sequencing Expands Our Understanding of the Phenotypic Impact of Variants at GWAS Loci.

    Published in:
    PLoS Genetics, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.pgen.1004147
    By:
    • Service, Susan K.;
    • Teslovich, Tanya M.;
    • Fuchsberger, Christian;
    • Ramensky, Vasily;
    • Yajnik, Pranav;
    • Koboldt, Daniel C.;
    • Larson, David E.;
    • Zhang, Qunyuan;
    • Lin, Ling;
    • Welch, Ryan;
    • Ding, Li;
    • McLellan, Michael D.;
    • O'Laughlin, Michele;
    • Fronick, Catrina;
    • Fulton, Lucinda L.;
    • Magrini, Vincent;
    • Swift, Amy;
    • Elliott, Paul;
    • Jarvelin, Marjo-Riitta;
    • Kaakinen, Marika
    Publication type:
    Article

  • Breakpoint Surveyor: a pipeline for structural variant visualization.

    Published in:
    Bioinformatics, 2017, v. 33, n. 19, p. 3121, doi. 10.1093/bioinformatics/btx362
    By:
    • Wyczalkowski, Matthew A.;
    • Wylie, Kristine M.;
    • Song Cao;
    • McLellan, Michael D.;
    • Flynn, Jennifer;
    • Mo Huang;
    • Kai Ye;
    • Xian Fan;
    • Ken Chen;
    • Wendl, Michael C.;
    • Li Ding
    Publication type:
    Article

  • MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.

    Published in:
    Bioinformatics, 2014, v. 30, n. 7, p. 1015, doi. 10.1093/bioinformatics/btt755
    By:
    • Niu, Beifang;
    • Ye, Kai;
    • Zhang, Qunyuan;
    • Lu, Charles;
    • Xie, Mingchao;
    • McLellan, Michael D.;
    • Wendl, Michael C.;
    • Ding, Li
    Publication type:
    Article

  • CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.

    Published in:
    Bioinformatics, 2010, v. 26, n. 4, p. 464, doi. 10.1093/bioinformatics/btp708
    By:
    • Qunyuan Zhang;
    • Ding, Li;
    • Larson, David E.;
    • Koboldt, Daniel C.;
    • McLellan, Michael D.;
    • Chen, Ken;
    • Xiaoqi Shi;
    • Kraja, Aldi;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Borecki, Ingrid B.;
    • Province, Michael A.
    Publication type:
    Article

  • VarScan: variant detection in massively parallel sequencing of individual and pooled samples.

    Published in:
    Bioinformatics, 2009, v. 25, n. 17, p. 2283, doi. 10.1093/bioinformatics/btp373
    By:
    • Koboldt, Daniel C.;
    • Chen, Ken;
    • Wylie, Todd;
    • Larson, David E.;
    • McLellan, Michael D.;
    • Mardis, Elaine R.;
    • Weinstock, George M.;
    • Wilson, Richard K.;
    • Li Ding
    Publication type:
    Article