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Molecular evolution of chloroplast genomes in Monsteroideae (Araceae)
Published in:
Planta: An International Journal of Plant Biology, 2020, v. 251, n. 3, p. 1, doi. 10.1007/s00425-020-03365-7
By:
- Henriquez, Claudia L.;
- Abdullah;
- Ahmed, Ibrar;
- Carlsen, Monica M.;
- Zuluaga, Alejandro;
- Croat, Thomas B.;
- McKain, Michael R.
Publication type:
Article
Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca).
Published in:
Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.671371
By:
- Alger, Elizabeth I.;
- Platts, Adrian E.;
- Deb, Sontosh K.;
- Luo, Xi;
- Ou, Shujun;
- Cao, Yao;
- Hummer, Kim E.;
- Xiong, Zhiyong;
- Knapp, Steven J.;
- Liu, Zhongchi;
- McKain, Michael R.;
- Edger, Patrick P.
Publication type:
Article
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.
Published in:
GigaScience, 2018, v. 7, n. 2, p. 1, doi. 10.1093/gigascience/gix124
By:
- Edger, Patrick P.;
- VanBuren, Robert;
- Colle, Marivi;
- Poorten, Thomas J.;
- Ching Man Wai;
- Niederhuth, Chad E.;
- Alger, Elizabeth I.;
- Shujun Ou;
- Acharya, Charlotte B.;
- Jie Wang;
- Callow, Pete;
- McKain, Michael R.;
- Jinghua Shi;
- Collier, Chad;
- Zhiyong Xiong;
- Mower, Jeffrey P.;
- Slovin, Janet P.;
- Hytönen, Timo;
- Ning Jiang;
- Childs, Kevin L.
Publication type:
Article
Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells.
Published in:
Plant Journal, 2015, v. 82, n. 6, p. 991, doi. 10.1111/tpj.12871
By:
- Augustin, Megan M.;
- Ruzicka, Dan R.;
- Shukla, Ashutosh K.;
- Augustin, Jörg M.;
- Starks, Courtney M.;
- O'Neil‐Johnson, Mark;
- McKain, Michael R.;
- Evans, Bradley S.;
- Barrett, Matt D.;
- Smithson, Ann;
- Wong, Gane Ka‐Shu;
- Deyholos, Michael K.;
- Edger, Patrick P.;
- Pires, J. Chris;
- Leebens‐Mack, James H.;
- Mann, David A.;
- Kutchan, Toni M.
Publication type:
Article
Charting the course for new discoveries in polyploid lineages.
Published in:
Applications in Plant Sciences, 2024, v. 12, n. 4, p. 1, doi. 10.1002/aps3.11613
By:
- McKain, Michael R.;
- Yang, Ya;
- Golicz, Agnieszka;
- Gross, Briana L.
Publication type:
Article
Practical considerations for plant phylogenomics.
Published in:
Applications in Plant Sciences, 2018, v. 6, n. 3, p. 1, doi. 10.1002/aps3.1038
By:
- McKain, Michael R.;
- Johnson, Matthew G.;
- Uribe‐Convers, Simon;
- Eaton, Deren;
- Yang, Ya
Publication type:
Article
Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae).
Published in:
Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.573767
By:
- Heyduk, Karolina;
- McAssey, Edward V.;
- Grimwood, Jane;
- Shu, Shengqiang;
- Schmutz, Jeremy;
- McKain, Michael R.;
- Leebens-Mack, Jim
Publication type:
Article
Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes.
Published in:
Molecular Biology & Evolution, 2015, v. 32, n. 1, p. 193, doi. 10.1093/molbev/msu296
By:
- Cannon, Steven B.;
- McKain, Michael R.;
- Harkess, Alex;
- Nelson, Matthew N.;
- Dash, Sudhansu;
- Deyholos, Michael K.;
- Yanhui Peng;
- Joyce, Blake;
- Stewart Jr., Charles N.;
- Rolf, Megan;
- Kutchan, Toni;
- Xuemei Tan;
- Cui Chen;
- Yong Zhang;
- Carpenter, Eric;
- Gane Ka-Shu Wong;
- Doyle, Jeff J.;
- Leebens-Mack, Jim
Publication type:
Article
Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.
Published in:
Plant Cell, 2017, v. 29, n. 9, p. 2150, doi. 10.1105/tpc.17.00010
By:
- Edger, Patrick P.;
- Smith, Ronald;
- McKain, Michael R.;
- Cooley, Arielle M.;
- Vallejo-Marin, Mario;
- Yuan, Yaowu;
- Bewick, Adam J.;
- Ji, Lexiang;
- Platts, Adrian E.;
- Bowman, Megan J.;
- Childs, Kevin L.;
- Washburn, Jacob D.;
- Schmitz, Robert J.;
- Smith, Gregory D.;
- Pires, J. Chris;
- Puzey, Joshua R.
Publication type:
Article
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.
Published in:
Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.876779
By:
- Timilsena, Prakash Raj;
- Wafula, Eric K.;
- Barrett, Craig F.;
- Ayyampalayam, Saravanaraj;
- McNeal, Joel R.;
- Rentsch, Jeremy D.;
- McKain, Michael R.;
- Heyduk, Karolina;
- Harkess, Alex;
- Villegente, Matthieu;
- Conran, John G.;
- Illing, Nicola;
- Fogliani, Bruno;
- Ané, Cécile;
- Pires, J. Chris;
- Davis, Jerrold I.;
- Zomlefer, Wendy B.;
- Stevenson, Dennis W.;
- Graham, Sean W.;
- Givnish, Thomas J.
Publication type:
Article
Evolutionary Dynamics of Transposable Elements Following a Shared Polyploidization Event in the Tribe Andropogoneae.
Published in:
G3: Genes | Genomes | Genetics, 2020, v. 10, n. 12, p. 4387, doi. 10.1534/g3.120.401596
By:
- Ramachandran, Dhanushya;
- McKain, Michael R.;
- Kellogg, Elizabeth A.;
- Hawkins, Jennifer S.
Publication type:
Article
Digitized collections elucidate invasion history and patterns of awn polymorphism in Microstegium vimineum.
Published in:
American Journal of Botany, 2022, v. 109, n. 5, p. 689, doi. 10.1002/ajb2.1852
By:
- Barrett, Craig F.;
- Huebner, Cynthia D.;
- Bender, Zoe A.;
- Budinsky, Trezalka A.;
- Corbett, Cameron W.;
- Latvis, Maribeth;
- McKain, Michael R.;
- Motley, M'Kayla;
- Skibicki, Samuel V.;
- Thixton, Hana L.;
- Santee, Mathilda V.;
- Cumberledge, Aubrey N.
Publication type:
Article
Botany is the root and the future of invasion biology.
Published in:
American Journal of Botany, 2021, v. 108, n. 4, p. 549, doi. 10.1002/ajb2.1642
By:
- Sutherland, Brittany L.;
- Barrett, Craig F.;
- Beck, James B.;
- Latvis, Maribeth;
- McKain, Michael R.;
- Sigel, Erin M.;
- Kooyers, Nicholas J.
Publication type:
Article
Genome‐scale data resolves the timing of divergence in Joshua trees.
Published in:
American Journal of Botany, 2021, v. 108, n. 4, p. 647, doi. 10.1002/ajb2.1633
By:
- Smith, Christopher Irwin;
- McKain, Michael R.;
- Guimond, Austin;
- Flatz, Ramona
Publication type:
Article
Life Without Water.
Published in:
American Journal of Botany, 2021, v. 108, n. 2, p. 181, doi. 10.1002/ajb2.1615
By:
- Heyduk, Karolina;
- Grace, Olwen M;
- McKain, Michael R
Publication type:
Article
Phylogeny and multiple independent whole‐genome duplication events in the Brassicales.
Published in:
American Journal of Botany, 2020, v. 107, n. 8, p. 1148, doi. 10.1002/ajb2.1514
By:
- Mabry, Makenzie E.;
- Brose, Julia M.;
- Blischak, Paul D.;
- Sutherland, Brittany;
- Dismukes, Wade T.;
- Bottoms, Christopher A.;
- Edger, Patrick P.;
- Washburn, Jacob D.;
- An, Hong;
- Hall, Jocelyn C.;
- McKain, Michael R.;
- Al‐Shehbaz, Ihsan;
- Barker, Michael S.;
- Schranz, M. Eric;
- Conant, Gavin C.;
- Pires, J. Chris
Publication type:
Article
Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae).
Published in:
American Journal of Botany, 2018, v. 105, n. 4, p. 631, doi. 10.1002/ajb2.1047
By:
- Unruh, Sarah A.;
- McKain, Michael R.;
- Lee, Yung‐I;
- Yukawa, Tomohisa;
- McCormick, Melissa K.;
- Shefferson, Richard P.;
- Smithson, Ann;
- Leebens‐Mack, James H.;
- Pires, J. Chris
Publication type:
Article
Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae).
Published in:
American Journal of Botany, 2016, v. 103, n. 10, p. 1717, doi. 10.3732/ajb.1600198
By:
- McKain, Michael R.;
- McNeal, Joel R.;
- Kellar, P. Roxanne;
- Eguiarte, Luis E.;
- Pires, J. Chris;
- Leebens‐Mack, Jim
Publication type:
Article
Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor.
Published in:
American Journal of Botany, 2016, v. 103, n. 7, p. 1272, doi. 10.3732/ajb.1500471
By:
- Vallejo‐Marín, Mario;
- Cooley, Arielle M.;
- Lee, Michelle Yuequi;
- Folmer, Madison;
- McKain, Michael R.;
- Puzey, Joshua R.
Publication type:
Article
PHYLOGENETIC ANALYSIS OF SACCHARUM S.L. (POACEAE; ANDROPOGONEAE), WITH EMPHASIS ON THE CIRCUMSCRIPTION OF THE SOUTH AMERICAN SPECIES.
Published in:
American Journal of Botany, 2015, v. 102, n. 2, p. 248, doi. 10.3732/ajb.1400397
By:
- Welker, Cassiano A. D.;
- Souza‐Chies, Tatiana T.;
- Longhi‐Wagner, Hilda M.;
- Peichoto, Myriam Carolina;
- McKain, Michael R.;
- Kellogg, Elizabeth A.
Publication type:
Article
DIVERSIFICATION TIMES AMONG BRASSICA (BRASSICACEAE) CROPS SUGGEST HYBRID FORMATION AFTER 20 MILLION YEARS OF DIVERGENCE.
Published in:
American Journal of Botany, 2014, v. 101, n. 1, p. 86, doi. 10.3732/ajb.1300312
By:
- Arias, Tatiana;
- Beilstein, Mark A.;
- Tang, Michelle;
- McKain, Michael R.;
- Pires, J. Chris
Publication type:
Article
PHYLOGENOMIC ANALYSIS OF TRANSCRIPTOME DATA ELUCIDATES CO-OCCURRENCE OF A PALEOPOLYPLOID EVENT AND THE ORIGIN OF BIMODAL KARYOTYPES IN AGAVOIDEAE (ASPARAGACEA).
Published in:
American Journal of Botany, 2012, v. 99, n. 2, p. 397, doi. 10.3732/ajb.1100537
By:
- McKain, Michael R.;
- Wickett, Norman;
- Yeting Zhang;
- Ayyampalayam, Saravanaraj;
- McCombie, W. Richard;
- Chase, Mark W.;
- Pires, J. Chris;
- DePamphilis, Claude W.;
- Leebens-Mack, Jim
Publication type:
Article
QUALITY AND QUANTITY OF DATA RECOVERED FROM MASSIVELY PARALLEL SEQUENCING: EXAMPLES IN ASPARAGALES AND POACEAE.
Published in:
American Journal of Botany, 2012, v. 99, n. 2, p. 330, doi. 10.3732/ajb.1100491
By:
- Steele, E. Roxanne;
- Hertweck, Kate L.;
- Mayfield, Dustin;
- McKain, Michael R.;
- Leebens-Mack, James;
- Pires, J. Chris
Publication type:
Article
Phylogenomics enables biogeographic analysis and a new subtribal classification of Andropogoneae (Poaceae—Panicoideae).
Published in:
Journal of Systematics & Evolution, 2020, v. 58, n. 6, p. 1003, doi. 10.1111/jse.12691
By:
- Welker, Cassiano A. D.;
- McKain, Michael R.;
- Estep, Matt C.;
- Pasquet, Rémy S.;
- Chipabika, Gilson;
- Pallangyo, Beatrice;
- Kellogg, Elizabeth A.
Publication type:
Article
A genome triplication associated with early diversification of the core eudicots.
Published in:
Genome Biology, 2012, v. 13, n. 1, p. 1, doi. 10.1186/gb-2012-13-1-r3
By:
- Jiao, Yuannian;
- Leebens-Mack, Jim;
- Ayyampalayam, Saravanaraj;
- Bowers, John E.;
- McKain, Michael R.;
- McNeal, Joel;
- Rolf, Megan;
- Ruzicka, Daniel R.;
- Wafula, Eric;
- Wickett, Norman J.;
- Xiaolei Wu;
- Yong Zhang;
- Jun Wang;
- Yeting Zhang;
- Carpenter, Eric J.;
- Deyholos, Michael K.;
- Kutchan, Toni M.;
- Chanderbali, Andre S.;
- Soltis, Pamela S.;
- Stevenson, Dennis W.
Publication type:
Article
Ancient Polyploidy and Genome Evolution in Palms.
Published in:
Genome Biology & Evolution, 2019, v. 11, n. 5, p. 1501, doi. 10.1093/gbe/evz092
By:
- Barrett, Craig F;
- McKain, Michael R;
- Sinn, Brandon T;
- Ge, Xue-Jun;
- Zhang, Yuqu;
- Antonelli, Alexandre;
- Bacon, Christine D
Publication type:
Article
A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales.
Published in:
Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1150, doi. 10.1093/gbe/evw060
By:
- McKain, Michael R.;
- Haibao Tang;
- McNeal, Joel R.;
- Ayyampalayam, Saravanaraj;
- Davis, Jerrold I.;
- dePamphilis, Claude W.;
- Givnish, Thomas J.;
- Pires, J. Chris;
- Stevenson, Dennis Wm.;
- Leebens-Mack, James H.
Publication type:
Article
Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3692-8
By:
- Harrington, Andrew W.;
- McKain, Michael R.;
- Michalski, Daniel;
- Bauer, Kaylyn M.;
- Daugherty, Joshua M.;
- Steiniger, Mindy
Publication type:
Article
Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective.
Published in:
New Phytologist, 2023, v. 238, n. 6, p. 2284, doi. 10.1111/nph.18927
By:
- Deb, Sontosh K.;
- Edger, Patrick P.;
- Pires, J. Chris;
- McKain, Michael R.
Publication type:
Article
Continued Adaptation of C<sub>4</sub> Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses.
Published in:
Systematic Biology, 2020, v. 69, n. 3, p. 445, doi. 10.1093/sysbio/syz066
By:
- Bianconi, Matheus E;
- Hackel, Jan;
- Vorontsova, Maria S;
- Alberti, Adriana;
- Arthan, Watchara;
- Burke, Sean V;
- Duvall, Melvin R;
- Kellogg, Elizabeth A;
- Lavergne, Sébastien;
- McKain, Michael R;
- Meunier, Alexandre;
- Osborne, Colin P;
- Traiperm, Paweena;
- Christin, Pascal-Antoine;
- Besnard, Guillaume
Publication type:
Article
Confirmation of the Hybrid Origin of Eupatorium Χtruncatum (Asteraceae) Using Nuclear and Plastid Markers.
Published in:
Castanea, 2010, v. 75, n. 3, p. 381, doi. 10.2179/09-043.1
By:
- McKain, Michael R.;
- Chapman, Mark A.;
- Ingram, Amanda L.
Publication type:
Article
The asparagus genome sheds light on the origin and evolution of a young Y chromosome.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01064-8
By:
- Harkess, Alex;
- Jinsong Zhou;
- Chunyan Xu;
- Bowers, John E.;
- Van der Hulst, Ron;
- Ayyampalayam, Saravanaraj;
- Mercati, Francesco;
- Riccardi, Paolo;
- McKain, Michael R.;
- Kakrana, Atul;
- Haibao Tang;
- Ray, Jeremy;
- Groenendijk, John;
- Siwaret Arikit;
- Mathioni, Sandra M.;
- Mayumi Nakano;
- Hongyan Shan;
- Telgmann-Rauber, Alexa;
- Akira Kanno;
- Zhen Yue
Publication type:
Article
The draft genome of the C<sub>3</sub> panicoid grass species Dichanthelium oligosanthes.
Published in:
Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1080-3
By:
- Studer, Anthony J.;
- Schnable, James C.;
- Weissmann, Sarit;
- Kolbe, Allison R.;
- McKain, Michael R.;
- Ying Shao;
- Cousins, Asaph B.;
- Kellogg, Elizabeth A.;
- Brutnell, Thomas P.
Publication type:
Article
Floral Diversity and Pollination Syndromes in Agave subgenus Manfreda.
Published in:
Integrative & Comparative Biology, 2023, v. 63, n. 6, p. 1376, doi. 10.1093/icb/icad118
By:
- MacNeill, Bryan N;
- Ortiz-Brunel, Juan Pablo;
- Rodríguez, Aarón;
- Ruiz-Sánchez, Eduardo;
- Navarro-Moreno, Jesús;
- Hofford, Nathaniel P;
- McKain, Michael R
Publication type:
Article
Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants.
Published in:
New Phytologist, 2017, v. 216, n. 2, p. 562, doi. 10.1111/nph.14180
By:
- Hackenberg, Dieter;
- McKain, Michael R.;
- Lee, Soon Goo;
- Roy Choudhury, Swarup;
- McCann, Tyler;
- Schreier, Spencer;
- Harkess, Alex;
- Pires, J. Chris;
- Wong, Gane Ka‐Shu;
- Jez, Joseph M.;
- Kellogg, Elizabeth A.;
- Pandey, Sona
Publication type:
Article
Dissecting the molecular signatures of apical cell-type shoot meristems from two ancient land plant lineages.
Published in:
New Phytologist, 2015, v. 207, n. 3, p. 893, doi. 10.1111/nph.13407
By:
- Frank, Margaret H.;
- Edwards, Molly B.;
- Schultz, Eric R.;
- McKain, Michael R.;
- Fei, Zhangjun;
- Sørensen, Iben;
- Rose, Jocelyn K. C.;
- Scanlon, Michael J.
Publication type:
Article
Plastome phylogenomics of sugarcane and relatives confirms the segregation of the genus Tripidium (Poaceae: Andropogoneae).
Published in:
Taxon, 2019, v. 68, n. 2, p. 246, doi. 10.1002/tax.12030
By:
- Welker, Cassiano A.D.;
- McKain, Michael R.;
- Vorontsova, Maria S.;
- Peichoto, Myriam C.;
- Kellogg, Elizabeth A.
Publication type:
Article
Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes.
Published in:
Bioinformatics, 2017, v. 33, n. 1, p. 130, doi. 10.1093/bioinformatics/btw583
By:
- McKain, Michael R.;
- Hartsock, Ryan H.;
- Wohl, Molly M.;
- Kellogg, Elizabeth A.
Publication type:
Article

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