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Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon.
Published in:
Comparative & Functional Genomics, 2012, p. 1, doi. 10.1155/2012/628204
By:
- Vasemägi, Anti;
- Nilsson, Jan;
- McGinnity, Philip;
- Cross, Tom;
- O'Reilly, Patrick;
- Glebe, Brian;
- Bo Peng;
- Berg, Paul Ragnar;
- Primmer, Craig Robert
Publication type:
Article
Global warming is projected to lead to increased freshwater growth potential and changes in pace of life in Atlantic salmon Salmo salar.
Published in:
Journal of Fish Biology, 2024, v. 104, n. 3, p. 647, doi. 10.1111/jfb.15603
By:
- Rinaldo, Adrian;
- de Eyto, Elvira;
- Reed, Thomas;
- Gjelland, Karl Øystein;
- McGinnity, Philip
Publication type:
Article
Autumn outmigrants in brown trout (Salmo trutta) are not a demographic dead‐end.
Published in:
Journal of Fish Biology, 2023, v. 102, n. 6, p. 1327, doi. 10.1111/jfb.15377
By:
- Wynne, Robert;
- Kaufmann, Joshka;
- Coughlan, Jamie;
- Phillips, Karl. P.;
- Waters, Catherine;
- Finlay, Ross W.;
- Rogan, Ger;
- Poole, Russell;
- McGinnity, Philip;
- Reed, Thomas E.
Publication type:
Article
Metabolic traits in brown trout (Salmo trutta) vary in response to food restriction and intrinsic factors.
Published in:
Conservation Physiology, 2020, v. 8, n. 1, p. 1, doi. 10.1093/conphys/coaa096
By:
- Archer, Louise C;
- Hutton, Stephen A;
- Harman, Luke;
- Poole, W Russell;
- Gargan, Patrick;
- McGinnity, Philip;
- Reed, Thomas E
Publication type:
Article
Form and uncertainty in stock-recruitment relations: observations and implications for Atlantic salmon (Salmo salar) management.
Published in:
Canadian Journal of Fisheries & Aquatic Sciences, 2010, v. 67, n. 6, p. 1040, doi. 10.1139/F10-038
By:
- Gurney, William S. C.;
- Bacon, Philip J.;
- McKenzie, Eddie;
- McGinnity, Philip;
- Mclean, Julian;
- Smith, Gordon;
- Youngson, Alan
Publication type:
Article
Modelling the migration of post-smolt Atlantic salmon (Salmo salar) in the Northeast Atlantic.
Published in:
ICES Journal of Marine Science / Journal du Conseil, 2012, v. 69, n. 9, p. 1616, doi. 10.1093/icesjms/fss108
By:
- Mork, Kjell Arne;
- Gilbey, John;
- Hansen, Lars Petter;
- Jensen, Arne J.;
- Jacobsen, Jan Arge;
- Holm, Marianne;
- Holst, Jens Christian;
- Ó Maoiléidigh, Niall;
- Vikebø, Frode;
- McGinnity, Philip;
- Melle, Webjørn;
- Thomas, Katie;
- Verspoor, Eric;
- Wennevik, Vidar
Publication type:
Article
Genetic and ecological effects of salmon farming on wild salmon: modelling from experimental results
Published in:
ICES Journal of Marine Science / Journal du Conseil, 2006, v. 63, n. 7, p. 1234, doi. 10.1016/j.icesjms.2006.04.025
By:
- Hindar, Kjetil;
- Fleming, Ian A.;
- McGinnity, Philip;
- Diserud, Ola
Publication type:
Article
Temporal variation in an immune response gene (MHC I) in anadromous Salmo trutta in an Irish river before and during aquaculture activities
Published in:
ICES Journal of Marine Science / Journal du Conseil, 2006, v. 63, n. 7, p. 1248, doi. 10.1016/j.icesjms.2006.03.025
By:
- Coughlan, James;
- McGinnity, Philip;
- O'Farrell, Brian;
- Dillane, Eileen;
- Diserud, Ola;
- de Eyto, Elvira;
- Farrell, Killian;
- Whelan, Ken;
- Stet, René J.M.;
- Cross, Thomas F.
Publication type:
Article
Anadromy, potamodromy and residency in brown trout Salmo trutta: the role of genes and the environment.
Published in:
Journal of Fish Biology, 2019, v. 95, n. 3, p. 692, doi. 10.1111/jfb.14005
By:
- Ferguson, Andrew;
- Reed, Thomas E.;
- Cross, Tom F.;
- McGinnity, Philip;
- Prodöhl, Paulo A.
Publication type:
Article
A call for global action to conserve native trout in the 21st century and beyond.
Published in:
Ecology of Freshwater Fish, 2020, v. 29, n. 3, p. 429, doi. 10.1111/eff.12538
By:
- Dauwalter, Daniel C.;
- Duchi, Antonino;
- Epifanio, John;
- Gandolfi, Andrea;
- Gresswell, Robert;
- Juanes, Francis;
- Kershner, Jeffrey;
- Lobón‐Cerviá, Javier;
- McGinnity, Philip;
- Meraner, Andreas;
- Mikheev, Pavel;
- Morita, Kentaro;
- Muhlfeld, Clint C.;
- Pinter, Kurt;
- Post, John R.;
- Unfer, Günther;
- Vøllestad, Leif Asbjørn;
- Williams, Jack E.
Publication type:
Article
SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon ( Salmo salar).
Published in:
Molecular Ecology, 2013, v. 22, n. 3, p. 532, doi. 10.1111/mec.12003
By:
- Bourret, Vincent;
- Kent, Matthew P.;
- Primmer, Craig R.;
- Vasemägi, Anti;
- Karlsson, Sten;
- Hindar, Kjetil;
- McGinnity, Philip;
- Verspoor, Eric;
- Bernatchez, Louis;
- Lien, Sigbjørn
Publication type:
Article
Sea-Age Variation in Maiden Atlantic Salmon Spawners: Phenotypic Plasticity or Genetic Polymorphism?
Published in:
Bulletin of Mathematical Biology, 2012, v. 74, n. 3, p. 615, doi. 10.1007/s11538-011-9679-8
By:
- Gurney, William;
- Bacon, Philip;
- Speirs, Douglas;
- McGinnity, Philip;
- Verspoor, Eric
Publication type:
Article
Seascape and its effect on migratory life-history strategy influences gene flow among coastal brown trout ( Salmo trutta) populations in the English Channel.
Published in:
Journal of Biogeography, 2016, v. 43, n. 3, p. 498, doi. 10.1111/jbi.12632
By:
- Quéméré, Erwan;
- Baglinière, Jean‐Luc;
- Roussel, Jean‐Marc;
- Evanno, Guillaume;
- McGinnity, Philip;
- Launey, Sophie
Publication type:
Article
Multiplexing with three-primer PCR for rapid and economical microsatellite validation.
Published in:
Hereditas, 2014, v. 151, n. 2/3, p. 43, doi. 10.1111/hrd2.00044
By:
- Vartia, Salla;
- Collins, Patrick C.;
- Cross, Thomas F.;
- Fitzgerald, Richard D.;
- Gauthier, David T.;
- McGinnity, Philip;
- Mirimin, Luca;
- Carlsson, Jens
Publication type:
Article
Food and temperature stressors have opposing effects in determining flexible migration decisions in brown trout (Salmo trutta).
Published in:
Global Change Biology, 2020, v. 26, n. 5, p. 2878, doi. 10.1111/gcb.14990
By:
- Archer, Louise C.;
- Hutton, Stephen A.;
- Harman, Luke;
- McCormick, Stephen D.;
- O'Grady, Michael N.;
- Kerry, Joseph P.;
- Poole, W. Russell;
- Gargan, Patrick;
- McGinnity, Philip;
- Reed, Thomas E.
Publication type:
Article
A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
Published in:
G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.120.401423
By:
- Kirubakaran, Tina Graceline;
- Andersen, Øivind;
- Moser, Michel;
- Árnyasi, Mariann;
- McGinnity, Philip;
- Lien, Sigbjørn;
- Kent, Matthew
Publication type:
Article
Genetic stock identification of Atlantic salmon (Salmo salar) populations in the southern part of the European range.
Published in:
BMC Genetics, 2010, v. 11, p. 31, doi. 10.1186/1471-2156-11-31
By:
- Griffiths, Andrew M.;
- Machado-Schiaffino, Gonzalo;
- Dillane, Eileen;
- Coughlan, Jamie;
- Horreo, Jose L.;
- Bowkett, Andrew E.;
- Minting, Peter;
- Toms, Simon;
- Roche, Willie;
- Gargan, Paddy;
- McGinnity, Philip;
- Cross, Tom;
- Bright, Dylan;
- Garcia-Vazquez, Eva;
- Stevens, Jamie R.
Publication type:
Article
Evolution and Expression of the Immune System of a Facultatively Anadromous Salmonid.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.568729
By:
- Colgan, Thomas J.;
- Moran, Peter A.;
- Archer, Louise C.;
- Wynne, Robert;
- Hutton, Stephen A.;
- McGinnity, Philip;
- Reed, Thomas E.
Publication type:
Article
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
Published in:
2017
By:
- Macqueen, Daniel J.;
- Primmer, Craig R.;
- Houston, Ross D.;
- Nowak, Barbara F.;
- Bernatchez, Louis;
- Bergseth, Steinar;
- Davidson, William S.;
- Gallardo-Escárate, Cristian;
- Goldammer, Tom;
- Guiguen, Yann;
- Iturra, Patricia;
- Kijas, James W.;
- Koop, Ben F.;
- Lien, Sigbjørn;
- Maass, Alejandro;
- Martin, Samuel A. M.;
- McGinnity, Philip;
- Montecino, Martin;
- Naish, Kerry A.;
- Nichols, Krista M.
Publication type:
Editorial
Escalating the conflict? Intersex genetic correlations influence adaptation to environmental change in facultatively migratory populations.
Published in:
Evolutionary Applications, 2022, v. 15, n. 5, p. 773, doi. 10.1111/eva.13368
By:
- Kane, Adam;
- Ayllón, Daniel;
- O'Sullivan, Ronan James;
- McGinnity, Philip;
- Reed, Thomas Eric
Publication type:
Article
The signature of fine scale local adaptation in Atlantic salmon revealed from common garden experiments in nature.
Published in:
Evolutionary Applications, 2015, v. 8, n. 9, p. 881, doi. 10.1111/eva.12299
By:
- O'Toole, Ciar L.;
- Reed, Thomas E.;
- Bailie, Deborah;
- Bradley, Caroline;
- Cotter, Deirdre;
- Coughlan, Jamie;
- Cross, Tom;
- Dillane, Eileen;
- McEvoy, Sarah;
- Ó Maoiléidigh, Niall;
- Prodöhl, Paulo;
- Rogan, Ger;
- McGinnity, Philip
Publication type:
Article
Population genomic analyses of early-phase Atlantic Salmon ( Salmo salar) domestication/captive breeding.
Published in:
Evolutionary Applications, 2015, v. 8, n. 1, p. 93, doi. 10.1111/eva.12230
By:
- Mäkinen, Hannu;
- Vasemägi, Anti;
- McGinnity, Philip;
- Cross, Tom F.;
- Primmer, Craig R.
Publication type:
Article
Varying disease-mediated selection at different life-history stages of Atlantic salmon in fresh water.
Published in:
Evolutionary Applications, 2011, v. 4, n. 6, p. 749, doi. 10.1111/j.1752-4571.2011.00197.x
By:
- de Eyto, Elvira;
- McGinnity, Philip;
- Huisman, Jisca;
- Coughlan, Jamie;
- Consuegra, Sofia;
- Farrell, Killian;
- O'Toole, Ciar;
- Tufto, Jarle;
- Megens, Hendrik-Jan;
- Jordan, William;
- Cross, Tom;
- Stet, Rene′ J. M.
Publication type:
Article
The application of CRISPR‐Cas for single species identification from environmental DNA.
Published in:
Molecular Ecology Resources, 2019, v. 19, n. 5, p. 1106, doi. 10.1111/1755-0998.13045
By:
- Williams, Molly‐Ann;
- O'Grady, Joyce;
- Ball, Bernard;
- Carlsson, Jens;
- Eyto, Elvira;
- McGinnity, Philip;
- Jennings, Eleanor;
- Regan, Fiona;
- Parle‐McDermott, Anne
Publication type:
Article
Competitive interactions affect introgression and population viability amidst maladaptive hybridization.
Published in:
Evolutionary Applications, 2024, v. 17, n. 7, p. 1, doi. 10.1111/eva.13746
By:
- Reed, Thomas Eric;
- Kane, Adam;
- McGinnity, Philip;
- O'Sullivan, Ronan James
Publication type:
Article
Molecular pedigree reconstruction and estimation of evolutionary parameters in a wild Atlantic salmon river system with incomplete sampling: a power analysis.
Published in:
BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2148-14-68
By:
- Aykanat, Tutku;
- Johnston, Susan E;
- Cotter, Deirdre;
- Cross, Thomas F;
- Poole, Russell;
- Prodőhl, Paulo A;
- Reed, Thomas;
- Rogan, Ger;
- McGinnity, Philip;
- Primmer, Craig R
Publication type:
Article
SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01134-6
By:
- Kazlauskaite, Raminta;
- Cheaib, Bachar;
- Heys, Chloe;
- Ijaz, Umer Zeeshan;
- Connelly, Stephanie;
- Sloan, William;
- Russel, Julie;
- Rubio, Laura;
- Sweetman, John;
- Kitts, Alex;
- McGinnity, Philip;
- Lyons, Philip;
- Llewellyn, Martin
Publication type:
Article
Alternative migratory tactics in brown trout (Salmo trutta) are underpinned by divergent regulation of metabolic but not neurological genes.
Published in:
Ecology & Evolution (20457758), 2021, v. 11, n. 12, p. 8347, doi. 10.1002/ece3.7664
By:
- Wynne, Robert;
- Archer, Louise C.;
- Hutton, Stephen A.;
- Harman, Luke;
- Gargan, Patrick;
- Moran, Peter A.;
- Dillane, Eileen;
- Coughlan, Jamie;
- Cross, Thomas F.;
- McGinnity, Philip;
- Colgan, Thomas J.;
- Reed, Thomas E.
Publication type:
Article
Telemetry and genetics reveal asymmetric dispersal of a lake‐feeding salmonid between inflow and outflow spawning streams at a microgeographic scale.
Published in:
Ecology & Evolution (20457758), 2020, v. 10, n. 4, p. 1762, doi. 10.1002/ece3.5937
By:
- Finlay, Ross;
- Poole, Russell;
- Coughlan, Jamie;
- Phillips, Karl P.;
- Prodöhl, Paulo;
- Cotter, Deirdre;
- McGinnity, Philip;
- Reed, Thomas E.
Publication type:
Article
Evolutionary stasis of a heritable morphological trait in a wild fish population despite apparent directional selection.
Published in:
Ecology & Evolution (20457758), 2019, v. 9, n. 12, p. 7096, doi. 10.1002/ece3.5274
By:
- O'Sullivan, Ronan James;
- Aykanat, Tutku;
- Johnston, Susan E.;
- Kane, Adam;
- Poole, Russell;
- Rogan, Ger;
- Prodöhl, Paulo A.;
- Primmer, Craig R.;
- McGinnity, Philip;
- Reed, Thomas Eric
Publication type:
Article
diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors.
Published in:
Methods in Ecology & Evolution, 2013, v. 4, n. 8, p. 782, doi. 10.1111/2041-210X.12067
By:
- Keenan, Kevin;
- McGinnity, Philip;
- Cross, Tom F.;
- Crozier, Walter W.;
- Prodöhl, Paulo A.;
- O'Hara, Robert B.
Publication type:
Article
Population genetics reveal patterns of natural colonisation of an ecologically and commercially important invasive fish.
Published in:
Canadian Journal of Fisheries & Aquatic Sciences, 2021, v. 78, n. 10, p. 1497, doi. 10.1139/cjfas-2020-0255
By:
- O'Toole, Ciar;
- Phillips, Karl P.;
- Bradley, Caroline;
- Coughlan, Jamie;
- Dillane, Eileen;
- Fleming, Ian A.;
- Reed, Thomas E.;
- Westley, Peter A.H.;
- Cross, Tom F.;
- McGinnity, Philip;
- Prodöhl, Paulo A.
Publication type:
Article
Heritability estimation via molecular pedigree reconstruction in a wild fish population reveals substantial evolutionary potential for sea age at maturity, but not size within age classes.
Published in:
Canadian Journal of Fisheries & Aquatic Sciences, 2019, v. 76, n. 5, p. 790, doi. 10.1139/cjfas-2018-0123
By:
- Reed, Thomas E.;
- Prodöhl, Paulo;
- Bradley, Caroline;
- Gilbey, John;
- McGinnity, Philip;
- Primmer, Craig R.;
- Bacon, Philip J.
Publication type:
Article
The response of North Atlantic diadromous fish to multiple stressors, including land use change: a multidecadal study.
Published in:
Canadian Journal of Fisheries & Aquatic Sciences, 2016, v. 73, n. 12, p. 1759, doi. 10.1139/cjfas-2015-0450
By:
- de Eyto, Elvira;
- Dalton, Catherine;
- Dillane, Mary;
- Jennings, Eleanor;
- McGinnity, Philip;
- O'Dwyer, Barry;
- Poole, Russell;
- Rogan, Ger;
- Taylor, David
Publication type:
Article
The paradox of 'premature migration' by adult anadromous salmonid fishes: patterns and hypotheses.
Published in:
Canadian Journal of Fisheries & Aquatic Sciences, 2016, v. 73, n. 7, p. 1015, doi. 10.1139/cjfas-2015-0345
By:
- Quinn, Thomas P.;
- McGinnity, Philip;
- Reed, Thomas E.;
- Bradford, Michael
Publication type:
Article

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