OpenURL Connection Search

Select item for more details and to access through your institution.

Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.
Published in:
Journal of Pathology, 2017, v. 243, n. 1, p. 78, doi. 10.1002/path.4929
By:
- Wang, Sheng;
- Yang, Feng;
- Petyuk, Vladislav A;
- Shukla, Anil K;
- Monroe, Matthew E;
- Gritsenko, Marina A;
- Rodland, Karin D;
- Smith, Richard D;
- Qian, Wei‐Jun;
- Gong, Cheng‐Xin;
- Liu, Tao
Publication type:
Article
A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases.
Published in:
Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-00894-y
By:
- Kyle, Jennifer E.;
- Stratton, Kelly G.;
- Zink, Erika M.;
- Kim, Young-Mo;
- Bloodsworth, Kent J.;
- Monroe, Matthew E.;
- Undiagnosed Diseases Network;
- Bacino, Carlos A.;
- Hanchard, Neil A.;
- Lewis, Richard A.;
- Rosenfeld, Jill A.;
- Scott, Daryl A.;
- Tran, Alyssa A.;
- Ward, Patricia A.;
- Burrage, Lindsay C.;
- Clark, Gary D.;
- Alejandro, Mercedes E.;
- Posey, Jennifer E.;
- Wangler, Michael F.;
- Lee, Brendan H.
Publication type:
Article
Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.
Published in:
Nature Methods, 2011, v. 8, n. 7, p. 587, doi. 10.1038/nmeth.1609
By:
- Frank, Ari M.;
- Monroe, Matthew E.;
- Shah, Anuj R.;
- Carver, Jeremy J.;
- Bandeira, Nuno;
- Moore, Ronald J.;
- Anderson, Gordon A.;
- Smith, Richard D.;
- Pevzner, Pavel A.
Publication type:
Article
Advances in proteomics data analysis and display using an accurate mass and time tag approach.
Published in:
Mass Spectrometry Reviews, 2006, v. 25, n. 3, p. 450, doi. 10.1002/mas.20071
By:
- Zimmer, Jennifer S.D.;
- Monroe, Matthew E.;
- Qian, Wei-Jun;
- Smith, Richard D.
Publication type:
Article
The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates.
Published in:
Molecular Ecology, 2016, v. 25, n. 22, p. 5795, doi. 10.1111/mec.13872
By:
- Khadempour, Lily;
- Burnum‐Johnson, Kristin E.;
- Baker, Erin S.;
- Nicora, Carrie D.;
- Webb‐Robertson, Bobbie‐Jo M.;
- White, Richard A.;
- Monroe, Matthew E.;
- Huang, Eric L.;
- Smith, Richard D.;
- Currie, Cameron R.
Publication type:
Article
Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.
Published in:
PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0139151
By:
- Aylward, Frank O.;
- Khadempour, Lily;
- Tremmel, Daniel M.;
- McDonald, Bradon R.;
- Nicora, Carrie D.;
- Wu, Si;
- Moore, Ronald J.;
- Orton, Daniel J.;
- Monroe, Matthew E.;
- Piehowski, Paul D.;
- Purvine, Samuel O.;
- Smith, Richard D.;
- Lipton, Mary S.;
- Burnum-Johnson, Kristin E.;
- Currie, Cameron R.
Publication type:
Article
Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.
Published in:
PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0134752
By:
- Aylward, Frank O.;
- Khadempour, Lily;
- Tremmel, Daniel M.;
- McDonald, Bradon R.;
- Nicora, Carrie D.;
- Wu, Si;
- Moore, Ronald J.;
- Orton, Daniel J.;
- Monroe, Matthew E.;
- Piehowski, Paul D.;
- Purvine, Samuel O.;
- Smith, Richard D.;
- Lipton, Mary S.;
- Burnum-Johnson, Kristin E.;
- Currie, Cameron R.
Publication type:
Article
High and Low Doses of Ionizing Radiation Induce Different Secretome Profiles in a Human Skin Model.
Published in:
PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092332
By:
- Zhang, Qibin;
- Matzke, Melissa;
- Schepmoes, Athena A.;
- Moore, Ronald J.;
- Webb-Robertson, Bobbie-Jo;
- Hu, Zeping;
- Monroe, Matthew E.;
- Qian, Wei-Jun;
- Smith, Richard D.;
- Morgan, William F.
Publication type:
Article
Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae.
Published in:
PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033903
By:
- Schrimpe-Rutledge, Alexandra C.;
- Jones, Marcus B.;
- Chauhan, Sadhana;
- Purvine, Samuel O.;
- Sanford, James A.;
- Monroe, Matthew E.;
- Brewer, Heather M.;
- Payne, Samuel H.;
- Ansong, Charles;
- Frank, Bryan C.;
- Smith, Richard D.;
- Peterso, Scott N.;
- Motin, Vladimir L.;
- Adkins, Joshua N.
Publication type:
Article
Phosphoproteomics Profiling of Human Skin Fibroblast Cells Reveals Pathways and Proteins Affected by Low Doses of Ionizing Radiation.
Published in:
PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0014152
By:
- Feng Yang;
- Waters, Katrina M.;
- Miller, John H.;
- Gritsenko, Marina A.;
- Rui Zhao;
- Xiuxia Du;
- Livesay, Eric A.;
- Purvine, Samuel O.;
- Monroe, Matthew E.;
- Yingchun Wang;
- Camp II, David G.;
- Smith, Richard D.;
- Stenoien, David L.
Publication type:
Article
Comparative Bacterial Proteomics: Analysis of the Core Genome Concept.
Published in:
PLoS ONE, 2008, v. 3, n. 2, p. 1, doi. 10.1371/journal.pone.0001542
By:
- Callister, Stephen J.;
- McCue, Lee Ann;
- Turse, Joshua E.;
- Monroe, Matthew E.;
- Auberry, Kenneth J.;
- Smith, Richard D.;
- Adkins, Joshua N.;
- Lipton, Mary S.
Publication type:
Article
Enhancing bottom-up and top-down proteomic measurements with ion mobility separations.
Published in:
Proteomics, 2015, v. 15, n. 16, p. 2766, doi. 10.1002/pmic.201500048
By:
- Baker, Erin Shammel;
- Burnum‐Johnson, Kristin E.;
- Ibrahim, Yehia M.;
- Orton, Daniel J.;
- Monroe, Matthew E.;
- Kelly, Ryan T.;
- Moore, Ronald J.;
- Zhang, Xing;
- Théberge, Roger;
- Costello, Catherine E.;
- Smith, Richard D.
Publication type:
Article
STEPS: A grid search methodology for optimized peptide identification filtering of MS/ MS database search results.
Published in:
Proteomics, 2013, v. 13, n. 5, p. 766, doi. 10.1002/pmic.201200096
By:
- Piehowski, Paul D.;
- Petyuk, Vladislav A.;
- Sandoval, John D.;
- Burnum, Kristin E.;
- Kiebel, Gary R.;
- Monroe, Matthew E.;
- Anderson, Gordon A.;
- Camp, David G.;
- Smith, Richard D.
Publication type:
Article
Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells.
Published in:
Proteomics, 2011, v. 11, n. 10, p. 2019, doi. 10.1002/pmic.201000722
By:
- Wang, Yuexi;
- Yang, Feng;
- Gritsenko, Marina A.;
- Wang, Yingchun;
- Clauss, Therese;
- Liu, Tao;
- Shen, Yufeng;
- Monroe, Matthew E.;
- Lopez-Ferrer, Daniel;
- Reno, Theresa;
- Moore, Ronald J.;
- Klemke, Richard L.;
- Camp, David G.;
- Smith, Richard D.
Publication type:
Article
Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics.
Published in:
Proteomics, 2005, v. 5, n. 12, p. 3120, doi. 10.1002/pmic.200401140
By:
- Dwayne A. Elias;
- Matthew E. Monroe;
- Matthew J. Marshall;
- Margaret F. Romine;
- Alexander S. Belieav;
- James K. Fredrickson;
- Gordon A. Anderson;
- Richard D. Smith;
- Mary S. Lipton
Publication type:
Article
Identification of shed proteins from chinese hamster ovary cells: Application of statistical confidence using human and mouse protein databases.
Published in:
Proteomics, 2005, v. 5, n. 7, p. 1815, doi. 10.1002/pmic.200401072
By:
- Mamoun Ahram;
- Eric F. Strittmatter;
- Matthew E. Monroe;
- Joshua N. Adkins;
- Joel C. Hunter;
- John H. Miller;
- David L. Springer
Publication type:
Article
Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: The human mammary epithelial cell proteome.
Published in:
Proteomics, 2005, v. 5, n. 5, p. 1263, doi. 10.1002/pmic.200401055
By:
- Tao Liu;
- Wei-Jun Qian;
- Wan-Nan U. Chen;
- Jon M. Jacobs;
- Ronald J. Moore;
- David J. Anderson;
- Marina A. Gritsenko;
- Matthew E. Monroe;
- Brian D. Thrall;
- David G. Camp;
- Richard D. Smith
Publication type:
Article
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
Published in:
Proteomics, 2005, v. 5, n. 2, p. 572, doi. 10.1002/pmic.200400942
By:
- Qian, Wei-Jun;
- Jacobs, Jon M.;
- Camp, David G.;
- Monroe, Matthew E.;
- Moore, Ronald J.;
- Gritsenko, Marina A.;
- Calvano, Steve E.;
- Lowry, Stephen F.;
- Xiao, Wenzhong;
- Moldawer, Lyle L.;
- Davis, Ronald W.;
- Tompkins, Ronald G.;
- Smith, Richard D.
Publication type:
Article
From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions.
Published in:
Biomolecules (2218-273X), 2021, v. 11, n. 1, p. 40, doi. 10.3390/biom11010040
By:
- Odenkirk, Melanie T.;
- Stratton, Kelly G.;
- Bramer, Lisa M.;
- Webb-Robertson, Bobbie-Jo M.;
- Bloodsworth, Kent J.;
- Monroe, Matthew E.;
- Burnum-Johnson, Kristin E.;
- Baker, Erin S.
Publication type:
Article
New Insights Into Lignification via Network and Multi-Omics Analyses of Arogenate Dehydratase Knock-Out Mutants in Arabidopsis thaliana.
Published in:
Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.664250
By:
- Hixson, Kim K.;
- Marques, Joaquim V.;
- Wendler, Jason P.;
- McDermott, Jason E.;
- Weitz, Karl K.;
- Clauss, Therese R.;
- Monroe, Matthew E.;
- Moore, Ronald J.;
- Brown, Joseph;
- Lipton, Mary S.;
- Bell, Callum J.;
- Paša-Tolić, Ljiljana;
- Davin, Laurence B.;
- Lewis, Norman G.
Publication type:
Article
Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.
Published in:
Rapid Communications in Mass Spectrometry: RCM, 2017, v. 31, n. 5, p. 447, doi. 10.1002/rcm.7808
By:
- Kyle, Jennifer E.;
- Casey, Cameron P.;
- Stratton, Kelly G.;
- Zink, Erika M.;
- Kim, Young‐Mo;
- Zheng, Xueyun;
- Monroe, Matthew E.;
- Weitz, Karl K.;
- Bloodsworth, Kent J.;
- Orton, Daniel J.;
- Ibrahim, Yehia M.;
- Moore, Ronald J.;
- Lee, Christine G.;
- Pedersen, Catherine;
- Orwoll, Eric;
- Smith, Richard D.;
- Burnum‐Johnson, Kristin E.;
- Baker, Erin S.
Publication type:
Article
MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
Published in:
BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-49
By:
- LaMarche, Brian L.;
- Crowell, Kevin L.;
- Jaitly, Navdeep;
- Petyuk, Vladislav A.;
- Shah, Anuj R.;
- Polpitiya, Ashoka D.;
- Sandoval, John D.;
- Kiebel, Gary R.;
- Monroe, Matthew E.;
- Callister, Stephen J.;
- Metz, Thomas O.;
- Anderson, Gordon A.;
- Smith, Richard D.
Publication type:
Article
A Method to Determine Lysine Acetylation Stoichiometries.
Published in:
International Journal of Proteomics, 2014, p. 1, doi. 10.1155/2014/730725
By:
- Nakayasu, Ernesto S.;
- Si Wu;
- Sydor, Michael A.;
- Shukla, Anil K.;
- Weitz, Karl K.;
- Moore, Ronald J.;
- Hixson, Kim K.;
- Jong-Seo Kim;
- Petyuk, Vladislav A.;
- Monroe, Matthew E.;
- Pasa-Tolic, Ljiljiana;
- Wei-Jun Qian;
- Smith, Richard D.;
- Adkins, Joshua N.;
- Ansong, Charles
Publication type:
Article
Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.
Published in:
International Journal of Proteomics, 2013, p. 1, doi. 10.1155/2013/279590
By:
- Si Wu;
- Brown, Roslyn N.;
- Payne, Samuel H.;
- Da Meng;
- Rui Zhao;
- Tolić, Nikola;
- Cao, Li;
- Shukla, Anil;
- Monroe, Matthew E.;
- Moore, Ronald J.;
- Lipton, Mary S.;
- Paša-Tolić, Ljiljana
Publication type:
Article
Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS<sup>3</sup> versus multi-stage activation tandem mass spectrometry.
Published in:
Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 19, p. 3027, doi. 10.1002/rcm.3703
By:
- Zhang, Qibin;
- Petyuk, Vladislav A.;
- Schepmoes, Athena A.;
- Orton, Daniel J.;
- Monroe, Matthew E.;
- Yang, Feng;
- Smith, Richard D.;
- Metz, Thomas O.
Publication type:
Article
Integrative Analysis of the Mitochondrial Proteome in Yeast.
Published in:
PLoS Biology, 2004, v. 2, n. 6, p. 1, doi. 10.1371/journal.pbio.0020160
By:
- Prokisch, Holger;
- Scharfe, Curt;
- Camp II, David G;
- Xiao, Wenzhong;
- David, Lior;
- Andreoli, Christophe;
- Monroe, Matthew E;
- Moore, Ronald J;
- Gritsenko, Marina A;
- Kozany, Christian;
- Hixson, Kim K;
- Mottaz, Heather M;
- Zischka, Hans;
- Ueffing, Marius;
- Herman, Zelek S;
- Davis, Ronald W;
- Meitinger, Thomas;
- Oefner, Peter J;
- Smith, Richard D;
- Steinmetz, Lars M
Publication type:
Article
Integrative Analysis of the Mitochondrial Proteome in Yeast.
Published in:
PLoS Biology, 2004, v. 2, n. 6, p. 795, doi. 10.1371/journal.pbio.0020160
By:
- Prokisch, Holger;
- Scharfe, Curt;
- Camp II, David G.;
- Xiao, Wenzhong;
- David, Lior;
- Andreoli, Christophe;
- Monroe, Matthew E.;
- Moore, Ronald J.;
- Gritsenko, Marina A.;
- Kozany, Christian;
- Hixson, Kim K.;
- Mottaz, Heather M.;
- Zischka, Hans;
- Ljeffing, Marius;
- Herman, Zelek S.;
- Davis, Ronald W.;
- Meitinger, Thomas;
- Oefner, Peter J.;
- Smith, Richard D.;
- Steinmetz, Lars M.
Publication type:
Article
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra.
Published in:
Bioinformatics, 2008, v. 24, n. 7, p. 1021, doi. 10.1093/bioinformatics/btn063
By:
- Anoop M. Mayampurath;
- Navdeep Jaitly;
- Samuel O. Purvine;
- Matthew E. Monroe;
- Kenneth J. Auberry;
- Joshua N. Adkins;
- Richard D. Smith
Publication type:
Article
VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
Published in:
Bioinformatics, 2007, v. 23, n. 15, p. 2021, doi. 10.1093/bioinformatics/btm281
By:
- Matthew E. Monroe;
- Nikola Tolic;
- Navdeep Jaitly;
- Jason L. Shaw;
- Joshua N. Adkins;
- Richard D. Smith
Publication type:
Article
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.
Published in:
Nature Protocols, 2018, v. 13, n. 7, p. 1632, doi. 10.1038/s41596-018-0006-9
By:
- Mertins, Philipp;
- Tang, Lauren C.;
- Krug, Karsten;
- Clark, David J.;
- Gritsenko, Marina A.;
- Chen, Lijun;
- Clauser, Karl R.;
- Clauss, Therese R.;
- Shah, Punit;
- Gillette, Michael A.;
- Petyuk, Vladislav A.;
- Thomas, Stefani N.;
- Mani, D. R.;
- Mundt, Filip;
- Moore, Ronald J.;
- Hu, Yingwei;
- Zhao, Rui;
- Schnaubelt, Michael;
- Keshishian, Hasmik;
- Monroe, Matthew E.
Publication type:
Article
Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data.
Published in:
Bioinformatics, 2019, v. 35, n. 21, p. 4507, doi. 10.1093/bioinformatics/btz250
By:
- Clair, Geremy;
- Reehl, Sarah;
- Stratton, Kelly G;
- Monroe, Matthew E;
- Tfaily, Malak M;
- Ansong, Charles;
- Kyle, Jennifer E
Publication type:
Article
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.
Published in:
Bioinformatics, 2017, v. 33, n. 17, p. 2715, doi. 10.1093/bioinformatics/btx305
By:
- Smith, Richard D.;
- Jian Ma;
- Casey, Cameron P.;
- Xueyun Zheng;
- Ibrahim, Yehia M.;
- Wilkins, Christopher S.;
- Renslow, Ryan S.;
- Thomas, Dennis G.;
- Payne, Samuel H.;
- Monroe, Matthew E.;
- Baker, Erin S.;
- Metz, Thomas O.;
- Teeguarden, Justin G.
Publication type:
Article
Correcting systematic bias and instrument measurement drift with mzRefinery.
Published in:
Bioinformatics, 2015, v. 31, n. 23, p. 3838, doi. 10.1093/bioinformatics/btv437
By:
- Gibbons, Bryson C.;
- Chambers, Matthew C.;
- Monroe, Matthew E.;
- Tabb, David L.;
- Payne, Samuel H.
Publication type:
Article
LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets.
Published in:
Bioinformatics, 2013, v. 29, n. 21, p. 2804, doi. 10.1093/bioinformatics/btt465
By:
- Crowell, Kevin L.;
- Slysz, Gordon W.;
- Baker, Erin S.;
- LaMarche, Brian L.;
- Monroe, Matthew E.;
- Ibrahim, Yehia M.;
- Payne, Samuel H.;
- Anderson, Gordon A.;
- Smith, Richard D.
Publication type:
Article
Machine learning based prediction for peptide drift times in ion mobility spectrometry.
Published in:
Bioinformatics, 2010, v. 26, n. 13, p. 1601, doi. 10.1093/bioinformatics/btq245
By:
- Shah, Anuj R.;
- Agarwal, Khushbu;
- Baker, Erin S.;
- Singhal, Mudita;
- Mayampurath, Anoop M.;
- Ibrahim, Yehia M.;
- Kangas, Lars J.;
- Monroe, Matthew E.;
- Rui Zhao;
- Belov, Mikhail E.;
- Anderson, Gordon A.;
- Smith, Richard D.
Publication type:
Article
Estimating probabilities of peptide database identifications to LC-FTICR-MS observations.
Published in:
Proteome Science, 2006, v. 4, p. 1, doi. 10.1186/1477-5956-4-1
By:
- Anderson, Kevin K.;
- Monroe, Matthew E.;
- Daly, Don S.
Publication type:
Article

Found: 36