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Identification of somatic genetic alterations in ovarian clear cell carcinoma with next generation sequencing.
- Published in:
- Genes, Chromosomes & Cancer, 2018, v. 57, n. 2, p. 51, doi. 10.1002/gcc.22507
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- Publication type:
- Article
Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana.
- Published in:
- In Silico Biology, 2010, v. 10, n. 1/2, p. 125, doi. 10.3233/ISB-2010-0414
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- Publication type:
- Article
Cell Illustrator 4.0: A Computational Platform for Systems Biology.
- Published in:
- In Silico Biology, 2010, v. 10, n. 1/2, p. 5, doi. 10.3233/ISB-2010-0415
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- Publication type:
- Article
Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways.
- Published in:
- In Silico Biology, 2007, v. 7, n. 6, p. 623
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- Publication type:
- Article
Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net.
- Published in:
- In Silico Biology, 2006, v. 6, n. 1/2, p. 1
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- Publication type:
- Article
Constructing Biological Pathway Models with Hybrid Functional Petri Nets.
- Published in:
- In Silico Biology, 2004, v. 4, n. 3, p. 271
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- Publication type:
- Article
Omics research project on prospective cohort studies from the Tohoku Medical Megabank Project.
- Published in:
- Genes to Cells, 2018, v. 23, n. 6, p. 406, doi. 10.1111/gtc.12588
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- Publication type:
- Article
Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals.
- Published in:
- Journal of Human Genetics, 2015, v. 60, n. 10, p. 581, doi. 10.1038/jhg.2015.68
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- Publication type:
- Article
Allele-specific DNA methylation of disease susceptibility genes in Japanese patients with inflammatory bowel disease.
- Published in:
- PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0194036
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- Publication type:
- Article
Genetic analysis of Japanese primary open-angle glaucoma patients and clinical characterization of risk alleles near CDKN2B-AS1, SIX6 and GAS7.
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- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0186678
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- Publication type:
- Article
iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.
- Published in:
- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S8
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- Publication type:
- Article
Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram.
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- BMC Systems Biology, 2010, v. 4, p. 39, doi. 10.1186/1752-0509-4-39
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- Publication type:
- Article
Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-42
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- Publication type:
- Article
Recursive regularization for inferring gene networks from time-course gene expression profiles.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-41
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- Publication type:
- Article
Systematic reconstruction of TRANSPATH data into Cell System Markup Language.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-53
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- Publication type:
- Article
HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S2-S7
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- Publication type:
- Article
TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S10-S5
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- Publication type:
- Article
SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 664, doi. 10.1186/1471-2164-15-664
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- Publication type:
- Article
A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development.
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- BMC Genomics, 2012, v. 13, n. 1, p. 335, doi. 10.1186/1471-2164-13-335
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- Publication type:
- Article
rs2013278 in the multiple immunological-trait susceptibility locus CD28 regulates the production of non-functional splicing isoforms.
- Published in:
- Human Genomics, 2022, v. 16, n. 1, p. 1, doi. 10.1186/s40246-022-00419-7
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- Publication type:
- Article
Hybrid Petri net based modeling for biological pathway simulation.
- Published in:
- Natural Computing, 2011, v. 10, n. 3, p. 1099, doi. 10.1007/s11047-009-9164-6
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- Publication type:
- Article
Identification of a two-SNP PLA2R1 Haplotype and HLA-DRB1 Alleles as Primary Risk Associations in Idiopathic Membranous Nephropathy.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33612-7
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- Publication type:
- Article
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals.
- Published in:
- Nature Communications, 2015, v. 6, n. 8, p. 8018, doi. 10.1038/ncomms9018
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- Publication type:
- Article
Identification of somatic mutations in postmortem human brains by whole genome sequencing and their implications for psychiatric disorders.
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- Psychiatry & Clinical Neurosciences, 2018, v. 72, n. 4, p. 280, doi. 10.1111/pcn.12632
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- Publication type:
- Article
Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 5019, doi. 10.3390/ijms24055019
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- Publication type:
- Article
Prediction Model with HLA-A*33:03 Reveals Number of Days to Develop Liver Cancer from Blood Test.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 4761, doi. 10.3390/ijms24054761
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- Publication type:
- Article
Estimating copy numbers of alleles from population-scale high-throughput sequencing data.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. S4, doi. 10.1186/1471-2105-16-S1-S4
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- Publication type:
- Article
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2105-13-279
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- Publication type:
- Article
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S7
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- Publication type:
- Article
Ontology-based instance data validation for high-quality curated biological pathways.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S8
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- Publication type:
- Article
An efficient biological pathway layout algorithmcombining grid-layout and spring embedder forcomplicated cellular location information.
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- BMC Bioinformatics, 2010, v. 11, p. 335, doi. 10.1186/1471-2105-11-335
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- Publication type:
- Article
Sex-Specific Differences in the Transcriptome of the Human Dorsolateral Prefrontal Cortex in Schizophrenia.
- Published in:
- Molecular Neurobiology, 2023, v. 60, n. 2, p. 1083, doi. 10.1007/s12035-022-03109-6
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- Publication type:
- Article
Frequent pathway mutations of splicing machinery in myelodysplasia.
- Published in:
- Nature, 2011, v. 478, n. 7367, p. 64, doi. 10.1038/nature10496
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- Publication type:
- Article
Contribution of Rare Variants of the SLC22A12 Gene to the Missing Heritability of Serum Urate Levels.
- Published in:
- Genetics, 2020, v. 214, n. 4, p. 1079, doi. 10.1534/genetics.119.303006
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- Publication type:
- Article
Genomic Heritabilities and Correlations of 17 Traits Related to Obesity and Associated Conditions in the Japanese Population.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 7, p. 2221, doi. 10.1534/g3.120.401242
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- Publication type:
- Article
A single-nucleotide-polymorphism in the 5′-flanking region of MSX1 gene as a predictive marker candidate for platinum-based therapy of esophageal carcinoma.
- Published in:
- Therapeutic Advances in Medical Oncology, 2022, p. 1, doi. 10.1177/17588359221080580
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- Publication type:
- Article
Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms.
- Published in:
- Nature Genetics, 2013, v. 45, n. 10, p. 1232, doi. 10.1038/ng.2731
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- Publication type:
- Article
Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators.
- Published in:
- Nature Genetics, 2012, v. 44, n. 7, p. 760, doi. 10.1038/ng.2291
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- Publication type:
- Article
Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing.
- Published in:
- Nature Genetics, 2010, v. 42, n. 11, p. 931, doi. 10.1038/ng.691
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- Publication type:
- Article
STR-realigner: a realignment method for short tandem repeat regions.
- Published in:
- 2016
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- Publication type:
- Product Review
AP-SKAT: highly-efficient genome-wide rare variant association test.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3094-3
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- Publication type:
- Article
Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree.
- Published in:
- BMC Genomics, 2016, v. 17, p. 465, doi. 10.1186/s12864-016-2821-0
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- Publication type:
- Article
A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.
- Published in:
- BMC Genomics, 2016, v. 17, p. 7, doi. 10.1186/s12864-015-2295-5
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- Publication type:
- Article
IDENTIFICATION OF GRANGER CAUSALITY BETWEEN GENE SETS.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 4, p. 679, doi. 10.1142/S0219720010004860
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- Publication type:
- Article
Antiemetic effects of baclofen in a shrew model of postoperative nausea and vomiting: Whole‐transcriptome analysis in the nucleus of the solitary tract.
- Published in:
- CNS Neuroscience & Therapeutics, 2022, v. 28, n. 6, p. 922, doi. 10.1111/cns.13823
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- Publication type:
- Article
A low-frequency IL4R locus variant in Japanese patients with intravenous immunoglobulin therapy-unresponsive Kawasaki disease.
- Published in:
- Pediatric Rheumatology, 2019, v. 17, n. 1, p. N.PAG, doi. 10.1186/s12969-019-0337-2
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- Publication type:
- Article
BFL: a node and edge betweenness based fast layout algorithm for large scale networks.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-19
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- Publication type:
- Article
Design and implementation of a hybrid cloud system for large-scale human genomic research.
- Published in:
- Human Genome Variation, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41439-023-00231-2
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- Publication type:
- Article
Direct reprogramming of human umbilical vein- and peripheral blood-derived endothelial cells into hepatic progenitor cells.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19041-z
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- Publication type:
- Article
Inference of Gene Regulatory Networks Incorporating Multi-Source Biological Knowledge via a State Space Model with <i>L</i>1 Regularization.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105942
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- Publication type:
- Article