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  • Correction to: Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches.

    Published in:
    2020
    By:
    • Babenko, Vladislav V.;
    • Podgorny, Oleg V.;
    • Manuvera, Valentin A.;
    • Kasianov, Artem S.;
    • Manolov, Alexander I.;
    • Grafskaia, Ekaterina N.;
    • Shirokov, Dmitriy A.;
    • Kurdyumov, Alexey S.;
    • Vinogradov, Dmitriy V.;
    • Nikitina, Anastasia S.;
    • Kovalchuk, Sergey I.;
    • Anikanov, Nickolay A.;
    • Butenko, Ivan O.;
    • Pobeguts, Olga V.;
    • Matyushkina, Daria S.;
    • Rakitina, Daria V.;
    • Kostryukova, Elena S.;
    • Zgoda, Victor G.;
    • Baskova, Isolda P.;
    • Trukhan, Vladimir M.
    Publication type:
    Correction Notice

  • Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches.

    Published in:
    BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6748-0
    By:
    • Babenko, Vladislav V.;
    • Podgorny, Oleg V.;
    • Manuvera, Valentin A.;
    • Kasianov, Artem S.;
    • Manolov, Alexander I.;
    • Grafskaia, Ekaterina N.;
    • Shirokov, Dmitriy A.;
    • Kurdyumov, Alexey S.;
    • Vinogradov, Dmitriy V.;
    • Nikitina, Anastasia S.;
    • Kovalchuk, Sergey I.;
    • Anikanov, Nickolay A.;
    • Butenko, Ivan O.;
    • Pobeguts, Olga V.;
    • Matyushkina, Daria S.;
    • Rakitina, Daria V.;
    • Kostryukova, Elena S.;
    • Zgoda, Victor G.;
    • Baskova, Isolda P.;
    • Trukhan, Vladimir M.
    Publication type:
    Article

  • Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients: a possible link with the disease course.

    Published in:
    Frontiers in Microbiomes, 2023, p. 1, doi. 10.3389/frmbi.2023.1067019
    By:
    • Galeeva, Julia S.;
    • Starikova, Elizaveta V.;
    • Fedorov, Dmitry E.;
    • Manolov, Alexander I.;
    • Pavlenko, Alexander V.;
    • Konanov, Dmitry N.;
    • Krivonos, Danil V.;
    • Babenko, Vladislav V.;
    • Klimina, Ksenia M.;
    • Veselovsky, Vladimir A.;
    • Morozov, Maxim D.;
    • Gafurov, Ilshat R.;
    • Gaifullina, Raushaniya F.;
    • Govorun, Vadim M.;
    • Ilina, Elena N.
    Publication type:
    Article

  • Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads.

    Published in:
    Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad702
    By:
    • Konanov, Dmitry N;
    • Babenko, Vladislav V;
    • Belova, Aleksandra M;
    • Madan, Arina G;
    • Boldyreva, Daria I;
    • Glushenko, Oksana E;
    • Butenko, Ivan O;
    • Fedorov, Dmitry E;
    • Manolov, Alexander I;
    • Krivonos, Danil V;
    • Lazarev, Vassilii N;
    • Govorun, Vadim M;
    • Ilina, Elena N
    Publication type:
    Article

  • Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens.

    Published in:
    BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0468-7
    By:
    • Fesenko, Igor A.;
    • Arapidi, Georgij P.;
    • Skripnikov, Alexander Yu.;
    • Alexeev, Dmitry G.;
    • Kostryukova, Elena S.;
    • Manolov, Alexander I.;
    • Altukhov, Ilya A.;
    • Khazigaleeva, Regina A.;
    • Seredina, Anna V.;
    • Kovalchuk, Sergey I.;
    • Ziganshin, Rustam H.;
    • Zgoda, Viktor G.;
    • Novikova, Svetlana E.;
    • Semashko, Tatiana A.;
    • Slizhikova, Darya K.;
    • Ptushenko, Vasilij V.;
    • Gorbachev, Alexey Y.;
    • Govorun, Vadim M.;
    • Ivanov, Vadim T.
    Publication type:
    Article

  • Long-term impact of fecal transplantation in healthy volunteers.

    Published in:
    BMC Microbiology, 2019, v. 19, n. 1, p. 1, doi. 10.1186/s12866-019-1689-y
    By:
    • Goloshchapov, Oleg V.;
    • Olekhnovich, Evgenii I.;
    • Sidorenko, Sergey V.;
    • Moiseev, Ivan S.;
    • Kucher, Maxim A.;
    • Fedorov, Dmitry E.;
    • Pavlenko, Alexander V.;
    • Manolov, Alexander I.;
    • Gostev, Vladimir V.;
    • Veselovsky, Vladimir A.;
    • Klimina, Ksenia M.;
    • Kostryukova, Elena S.;
    • Bakin, Evgeny A.;
    • Shvetcov, Alexander N.;
    • Gumbatova, Elvira D.;
    • Klementeva, Ruslana V.;
    • Shcherbakov, Alexander A.;
    • Gorchakova, Margarita V.;
    • Egozcue, Juan José;
    • Pawlowsky-Glahn, Vera
    Publication type:
    Article

  • Genome analysis of E. coli isolated from Crohn's disease patients.

    Published in:
    BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3917-x
    By:
    • Rakitina, Daria V.;
    • Manolov, Alexander I.;
    • Kanygina, Alexandra V.;
    • Garushyants, Sofya K.;
    • Baikova, Julia P.;
    • Alexeev, Dmitry G.;
    • Ladygina, Valentina G.;
    • Kostryukova, Elena S.;
    • Larin, Andrei K.;
    • Semashko, Tatiana A.;
    • Karpova, Irina Y.;
    • Babenko, Vladislav V.;
    • Ismagilova, Ruzilya K.;
    • Malanin, Sergei Y.;
    • Gelfand, Mikhail S.;
    • Ilina, Elena N.;
    • Gorodnichev, Roman B.;
    • Lisitsyna, Eugenia S.;
    • Aleshkin, Gennady I.;
    • Scherbakov, Petr L.
    Publication type:
    Article

  • Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota.

    Published in:
    Biomedicines, 2024, v. 12, n. 5, p. 996, doi. 10.3390/biomedicines12050996
    By:
    • Galeeva, Julia S.;
    • Fedorov, Dmitry E.;
    • Starikova, Elizaveta V.;
    • Manolov, Alexander I.;
    • Pavlenko, Alexander V.;
    • Selezneva, Oksana V.;
    • Klimina, Ksenia M.;
    • Veselovsky, Vladimir A.;
    • Morozov, Maxim D.;
    • Yanushevich, Oleg O.;
    • Krikheli, Natella I.;
    • Levchenko, Oleg V.;
    • Andreev, Dmitry N.;
    • Sokolov, Filipp S.;
    • Fomenko, Aleksey K.;
    • Devkota, Mikhail K.;
    • Andreev, Nikolai G.;
    • Zaborovskiy, Andrey V.;
    • Bely, Petr A.;
    • Tsaregorodtsev, Sergei V.
    Publication type:
    Article

  • Novel Klebsiella pneumoniae K23-Specific Bacteriophages From Different Families: Similarity of Depolymerases and Their Therapeutic Potential.

    Published in:
    Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.669618
    By:
    • Gorodnichev, Roman B.;
    • Volozhantsev, Nikolay V.;
    • Krasilnikova, Valentina M.;
    • Bodoev, Ivan N.;
    • Kornienko, Maria A.;
    • Kuptsov, Nikita S.;
    • Popova, Anastasia V.;
    • Makarenko, Galina I.;
    • Manolov, Alexander I.;
    • Slukin, Pavel V.;
    • Bespiatykh, Dmitry A.;
    • Verevkin, Vladimir V.;
    • Denisenko, Egor A.;
    • Kulikov, Eugene E.;
    • Veselovsky, Vladimir A.;
    • Malakhova, Maja V.;
    • Dyatlov, Ivan A.;
    • Ilina, Elena N.;
    • Shitikov, Egor A.
    Publication type:
    Article

  • Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn's disease discovered using metagenomic and genomic analyses.

    Published in:
    BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5306-5
    By:
    • Tyakht, Alexander V.;
    • Manolov, Alexander I.;
    • Kanygina, Alexandra V.;
    • Ischenko, Dmitry S.;
    • Kovarsky, Boris A.;
    • Popenko, Anna S.;
    • Pavlenko, Alexander V.;
    • Elizarova, Anna V.;
    • Rakitina, Daria V.;
    • Baikova, Julia P.;
    • Ladygina, Valentina G.;
    • Kostryukova, Elena S.;
    • Karpova, Irina Y.;
    • Semashko, Tatyana A.;
    • Larin, Andrei K.;
    • Grigoryeva, Tatyana V.;
    • Sinyagina, Mariya N.;
    • Malanin, Sergei Y.;
    • Shcherbakov, Petr L.;
    • Kharitonova, Anastasiya Y.
    Publication type:
    Article

  • VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota.

    Published in:
    Bioinformatics, 2019, v. 35, n. 19, p. 3803, doi. 10.1093/bioinformatics/btz154
    By:
    • Glushchenko, Oksana E;
    • Prianichnikov, Nikita A;
    • Olekhnovich, Evgenii I;
    • Manolov, Alexander I;
    • Tyakht, Alexander V;
    • Starikova, Elizaveta V;
    • Odintsova, Vera E;
    • Kostryukova, Elena S;
    • Ilina, Elena I
    Publication type:
    Article

  • Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy.

    Published in:
    Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01902
    By:
    • Olekhnovich, Evgenii I.;
    • Manolov, Alexander I.;
    • Samoilov, Andrey E.;
    • Prianichnikov, Nikita A.;
    • Malakhova, Maja V.;
    • Tyakht, Alexander V.;
    • Pavlenko, Alexander V.;
    • Babenko, Vlad V.;
    • Larin, Andrey K.;
    • Kovarsky, Boris A.;
    • Starikova, Elizaveta V.;
    • Glushchenko, Oksana E.;
    • Safina, Dilyara D.;
    • Markelova, Maria I.;
    • Boulygina, Eugenia A.;
    • Khusnutdinova, Dilyara R.;
    • Malanin, Sergey Y.;
    • Abdulkhakov, Sayar R.;
    • Abdulkhakov, Rustam A.;
    • Grigoryeva, Tatiana V.
    Publication type:
    Article