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BatchFLEX: feature-level equalization of X-batch.
Published in:
Bioinformatics, 2024, v. 40, n. 10, p. 1, doi. 10.1093/bioinformatics/btae587
By:
- Davis, Joshua T;
- Obermayer, Alyssa N;
- Soupir, Alex C;
- Hesterberg, Rebecca S;
- Duong, Thac;
- Yang, Ching-Yao;
- Dao, Ken Phong;
- Manley, Brandon J;
- Grass, G Daniel;
- Avram, Dorina;
- Rodriguez, Paulo C;
- Fridley, Brooke L;
- Yu, Xiaoqing;
- Teng, Mingxiang;
- Wang, Xuefeng;
- Shaw, Timothy I
Publication type:
Article
Evaluation of Patient-Reported Outcomes (PROs) Protocol Content and Reporting for Clinical Trials that Lead to the approval of frontline Immune Checkpoint Blockade Combination for Patients with Advanced Renal Cell Carcinoma - The Patients' Voice or a Missed Opportunity
Published in:
Clinical Genitourinary Cancer, 2022, v. 20, n. 2, p. E158, doi. 10.1016/j.clgc.2021.12.002
By:
- Chadha, Juskaran;
- Adashek, Jacob J.;
- Jim, Heather;
- Youngchul Kim;
- Semaan, Adele;
- Chakiryan, Nicholas H.;
- Safa, Houssein;
- Hajiran, Ali;
- Sexton, Wade;
- Gilbert, Scott M.;
- Manley, Brandon J.;
- Spiess, Philippe E.;
- Chahoud, Jad
Publication type:
Article
Detectable Lipidomes and Metabolomes by Different Plasma Exosome Isolation Methods in Healthy Controls and Patients with Advanced Prostate and Lung Cancer.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 1830, doi. 10.3390/ijms24031830
By:
- Soupir, Alex C.;
- Tian, Yijun;
- Stewart, Paul A.;
- Nunez-Lopez, Yury O.;
- Manley, Brandon J.;
- Pellini, Bruna;
- Bloomer, Amanda M.;
- Zhang, Jingsong;
- Mo, Qianxing;
- Marchion, Douglas C.;
- Liu, Min;
- Koomen, John M.;
- Siegel, Erin M.;
- Wang, Liang
Publication type:
Article
Retroperitoneal Lymph Node Dissection Versus Surveillance for Adult Early Stage Pure Testicular Teratoma: A Nationwide Analysis.
Published in:
Annals of Surgical Oncology: An Oncology Journal for Surgeons, 2021, v. 28, n. 7, p. 3648, doi. 10.1245/s10434-021-09696-3
By:
- Hajiran, Ali;
- Azizi, Mounsif;
- Aydin, Ahmet M.;
- Chakiryan, Nicholas H.;
- Peyton, Charles C.;
- Boulware, David C.;
- Manley, Brandon J.;
- Gilbert, Scott M.;
- Sexton, Wade J.
Publication type:
Article
Preoperative immunonutrition and carbohydrate loading associated with improved bowel function after radical cystectomy.
Published in:
Nutrition in Clinical Practice, 2022, v. 37, n. 1, p. 176, doi. 10.1002/ncp.10661
By:
- Patel, Sephalie Y.;
- Trona, Nathaniel;
- Alford, Brandon;
- Laborde, Jose M.;
- Kim, Youngchul;
- Li, Roger;
- Manley, Brandon J.;
- Gilbert, Scott M.;
- Sexton, Wade J.;
- Spiess, Philippe E.;
- Poch, Michael A.
Publication type:
Article
Positive Ki-67 and PD-L1 expression in post-neoadjuvant chemotherapy muscle-invasive bladder cancer is associated with shorter overall survival: a retrospective study.
Published in:
World Journal of Urology, 2021, v. 39, n. 5, p. 1539, doi. 10.1007/s00345-020-03342-5
By:
- Rubino, Selene;
- Kim, Youngchul;
- Zhou, Junmin;
- Dhilon, Jasreman;
- Li, Roger;
- Spiess, Philippe;
- Poch, Michael;
- Manley, Brandon J.;
- Pow-Sang, Julio;
- Gilbert, Scott;
- Sexton, Wade;
- Zhang, Jingsong
Publication type:
Article
Survival Outcomes Associated With Cytoreductive Nephrectomy in Patients With Metastatic Clear Cell Renal Cell Carcinoma.
Published in:
JAMA Network Open, 2022, v. 5, n. 5, p. e2212347, doi. 10.1001/jamanetworkopen.2022.12347
By:
- Chakiryan, Nicholas H.;
- Gore, L. Robert;
- Reich, Richard R.;
- Dunn, Rodney L.;
- Jiang, Da David;
- Gillis, Kyle A.;
- Green, Elizabeth;
- Hajiran, Ali;
- Hugar, Lee;
- Zemp, Logan;
- Zhang, Jingsong;
- Jain, Rohit K.;
- Chahoud, Jad;
- Spiess, Philippe E.;
- Manley, Brandon J.;
- Sexton, Wade J.;
- Hollenbeck, Brent K.;
- Gilbert, Scott M.
Publication type:
Article
Clinical and Genomic Features of Patients with Renal Cell Carcinoma and Advanced Chronic Kidney Disease: Analysis of a Multi-Institutional Database.
Published in:
Cancers, 2024, v. 16, n. 10, p. 1920, doi. 10.3390/cancers16101920
By:
- Eule, Corbin J.;
- Hu, Junxiao;
- Hedges, Dale;
- Jani, Alkesh;
- Pshak, Thomas;
- Manley, Brandon J.;
- Sanchez, Alejandro;
- Dreicer, Robert;
- Myint, Zin W.;
- Zakharia, Yousef;
- Lam, Elaine T.
Publication type:
Article
Multiplex Immunofluorescence Captures Progressive Immune Exhaustion with Advancing Penile Squamous Cell Cancer Stage.
Published in:
Cancers, 2024, v. 16, n. 2, p. 303, doi. 10.3390/cancers16020303
By:
- Ionescu, Filip;
- Nguyen, Jonathan;
- Segura, Carlos Moran;
- Paravathaneni, Mahati;
- Grass, G. Daniel;
- Johnstone, Peter;
- Zacharias, Niki M.;
- Pettaway, Curtis A.;
- Lu, Xin;
- Kim, Youngchul;
- Whiting, Junmin;
- Dhillon, Jasreman;
- Eschrich, Steven A.;
- Chadha, Juskaran;
- Gullapalli, Keerthi;
- Roman Souza, Gabriel;
- Miyagi, Hiroko;
- Manley, Brandon J.;
- Spiess, Philippe E.;
- Chahoud, Jad
Publication type:
Article
Challenges to Recruiting Men on Active Surveillance for Prostate Cancer in Clinical Chemoprevention Trials.
Published in:
Cancers, 2023, v. 15, n. 4, p. 1257, doi. 10.3390/cancers15041257
By:
- Kumar, Nagi B.;
- Bahl, Saira;
- Dhillon, Jasreman;
- Poch, Michael;
- Manley, Brandon;
- Li, Roger;
- Schell, Michael;
- Powsang, Julio
Publication type:
Article
Effects of Green Tea Catechins on Prostate Cancer Chemoprevention: The Role of the Gut Microbiome.
Published in:
Cancers, 2022, v. 14, n. 16, p. 3988, doi. 10.3390/cancers14163988
By:
- Kumar, Nagi B.;
- Hogue, Stephanie;
- Pow-Sang, Julio;
- Poch, Michael;
- Manley, Brandon J.;
- Li, Roger;
- Dhillon, Jasreman;
- Yu, Alice;
- Byrd, Doratha A.
Publication type:
Article
Cancer Detection and Classification by CpG Island Hypermethylation Signatures in Plasma Cell-Free DNA.
Published in:
Cancers, 2021, v. 13, n. 22, p. 5611, doi. 10.3390/cancers13225611
By:
- Huang, Jinyong;
- Soupir, Alex C.;
- Schlick, Brian D.;
- Teng, Mingxiang;
- Sahin, Ibrahim H.;
- Permuth, Jennifer B.;
- Siegel, Erin M.;
- Manley, Brandon J.;
- Pellini, Bruna;
- Wang, Liang
Publication type:
Article
Spatial clustering of CD68+ tumor associated macrophages with tumor cells is associated with worse overall survival in metastatic clear cell renal cell carcinoma.
Published in:
PLoS ONE, 2021, v. 16, n. 4, p. 1, doi. 10.1371/journal.pone.0245415
By:
- Chakiryan, Nicholas H.;
- Kimmel, Gregory J.;
- Kim, Youngchul;
- Hajiran, Ali;
- Aydin, Ahmet M.;
- Zemp, Logan;
- Katende, Esther;
- Nguyen, Jonathan;
- Lopez-Blanco, Neale;
- Chahoud, Jad;
- Spiess, Philippe E.;
- Fournier, Michelle;
- Dhillon, Jasreman;
- Wang, Liang;
- Moran-Segura, Carlos;
- El-Kenawi, Asmaa;
- Mulé, James;
- Altrock, Philipp M.;
- Manley, Brandon J.
Publication type:
Article
The pitfalls of electronic health orders: development of an enhanced intuitional protocol after a preventable patient death.
Published in:
Patient Safety in Surgery, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s13037-014-0039-0
By:
- Manley, Brandon J.;
- Gerike, Rebecca H. R. N.;
- Brockman, John;
- Robles, Jennifer;
- Raup, Valary B. S.;
- Bhayani, Sam
Publication type:
Article
Identifying and overcoming barriers to participation of minority populations in clinical trials: Lessons learned from the VanDAAM study.
Published in:
Cancer Medicine, 2023, v. 12, n. 2, p. 1869, doi. 10.1002/cam4.5000
By:
- Fink, Angelina K. C.;
- DeRenzis, Amanda C.;
- Awasthi, Shivanshu;
- Jahan, Nawreen;
- Johnstone, Peter A. S.;
- Pow‐Sang, Julio;
- Torres‐Roca, Javier;
- Grass, Daniel;
- Fernandez, Daniel;
- Naghavi, Arash;
- Tan, Susan;
- Manley, Brandon;
- Li, Roger;
- Poch, Michael;
- Yu, Alice;
- Little, Nikki;
- Bass, Eppie;
- Ercole, Cesar E.;
- Katsoulakis, Evangelia;
- Burri, Ryan
Publication type:
Article
Influence of gene expression on survival of clear cell renal cell carcinoma.
Published in:
Cancer Medicine, 2020, v. 9, n. 22, p. 8662, doi. 10.1002/cam4.3475
By:
- Berglund, Anders;
- Amankwah, Ernest K.;
- Kim, Young‐Chul;
- Spiess, Philippe E;
- Sexton, Wade J.;
- Manley, Brandon;
- Park, Hyun Y.;
- Wang, Liang;
- Chahoud, Jad;
- Chakrabarti, Ratna;
- Yeo, Chang D.;
- Luu, Hung N.;
- Pietro, Giuliano D.;
- Parker, Alexander;
- Park, Jong Y.
Publication type:
Article
Dissecting Outcomes: Should Cytoreductive Nephrectomy Be Performed for Patients With Metastatic Renal Cell Carcinoma With Sarcomatoid Dedifferentiation?
Published in:
Frontiers in Oncology, 2021, v. 11, p. N.PAG, doi. 10.3389/fonc.2020.627025
By:
- Adashek, Jacob J.;
- Zhang, Yumeng;
- Skelton IV, William Paul;
- Bilotta, Alyssa;
- Chahoud, Jad;
- Zemp, Logan;
- Li, Jiannong;
- Dhillon, Jasreman;
- Manley, Brandon;
- Spiess, Philippe E.
Publication type:
Article
Orbital angular momentum small-x evolution: exact results in the large-N<sub>c</sub> limit.
Published in:
Journal of High Energy Physics, 2024, v. 2024, n. 4, p. 1, doi. 10.1007/JHEP04(2024)055
By:
- Manley, Brandon
Publication type:
Article
Orbital angular momentum at small x revisited.
Published in:
Journal of High Energy Physics, 2024, v. 2024, n. 2, p. 1, doi. 10.1007/JHEP02(2024)060
By:
- Kovchegov, Yuri V.;
- Manley, Brandon
Publication type:
Article
Focal bipolar radiofrequency ablation for localized prostate cancer: Safety and feasibility.
Published in:
International Journal of Urology, 2020, v. 27, n. 10, p. 882, doi. 10.1111/iju.14321
By:
- Aydin, Ahmet Murat;
- Gage, Kenneth;
- Dhillon, Jasreman;
- Cheriyan, Salim K;
- Poch, Michael A;
- Manley, Brandon J;
- Li, Roger;
- Sexton, Wade J;
- Spiess, Philippe E;
- Gilbert, Scott M;
- Pow‐Sang, Julio M
Publication type:
Article
Identification of sarcomatoid differentiation in renal cell carcinoma by machine learning on multiparametric MRI.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83271-4
By:
- Mazin, Asim;
- Hawkins, Samuel H.;
- Stringfield, Olya;
- Dhillon, Jasreman;
- Manley, Brandon J.;
- Jeong, Daniel K.;
- Raghunand, Natarajan
Publication type:
Article
Antegrade administration of mitomycin gel for upper tract urothelial carcinoma via percutaneous nephrostomy tube: a multi‐institutional retrospective cohort study.
Published in:
BJU International, 2023, v. 131, n. 4, p. 471, doi. 10.1111/bju.15925
By:
- Rose, Kyle M.;
- Narang, Gopal;
- Rosen, Geoffrey;
- Labatte, Craig;
- Dumitrascu, Catalina I.;
- Campagna, Justin;
- Yu, Alice;
- Manley, Brandon J.;
- Spiess, Phillippe E.;
- Li, Roger;
- Adibi, Mehrad;
- Murray, Katie S.;
- Sexton, Wade J.;
- Humphreys, Mitchell R.
Publication type:
Article
Real-World Survival Outcomes Associated With First-Line Immunotherapy, Targeted Therapy, and Combination Therapy for Metastatic Clear Cell Renal Cell Carcinoma.
Published in:
JAMA Network Open, 2021, v. 4, n. 5, p. e2111329, doi. 10.1001/jamanetworkopen.2021.11329
By:
- Chakiryan, Nicholas H.;
- Jiang, Da David;
- Gillis, Kyle A.;
- Green, Elizabeth;
- Hajiran, Ali;
- Hugar, Lee;
- Zemp, Logan;
- Zhang, Jingsong;
- Jain, Rohit K.;
- Chahoud, Jad;
- Spiess, Philippe E.;
- Sexton, Wade;
- Gilbert, Scott M.;
- Manley, Brandon J.
Publication type:
Article
Adding Cyclooxygenase Inhibitors to Immune Checkpoint Inhibitors Did Not Improve Outcomes in Metastatic Renal Cell Carcinoma.
Published in:
Cells (2073-4409), 2022, v. 11, n. 16, p. 2505, doi. 10.3390/cells11162505
By:
- Zhang, Yumeng;
- Kumar, Premsai;
- Adashek, Jacob J.;
- Skelton IV, William P.;
- Li, Jiannong;
- Vosoughi, Aram;
- Chahoud, Jad;
- Manley, Brandon J.;
- Spiess, Philippe E.
Publication type:
Article
Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures.
Published in:
Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1092-z
By:
- Şenbabaoğlu, Yasin;
- Gejman, Ron S.;
- Winer, Andrew G.;
- Liu, Ming;
- Van Allen, Eliezer M.;
- de Velasco, Guillermo;
- Miao, Diana;
- Ostrovnaya, Irina;
- Drill, Esther;
- Luna, Augustin;
- Weinhold, Nils;
- Lee, William;
- Manley, Brandon J.;
- Khalil, Danny N.;
- Kaffenberger, Samuel D.;
- Yingbei Chen;
- Danilova, Ludmila;
- Voss, Martin H.;
- Coleman, Jonathan A.;
- Russo, Paul
Publication type:
Article
Multi-omics approach to identifying isoform variants as therapeutic targets in cancer patients.
Published in:
Frontiers in Oncology, 2022, v. 12, p. 1, doi. 10.3389/fonc.2022.1051487
By:
- Shaw, Timothy I.;
- Bi Zhao;
- Yuxin Li;
- Hong Wang;
- Liang Wang;
- Manley, Brandon;
- Stewart, Paul A.;
- Karolak, Aleksandra
Publication type:
Article
Genomic Testing in Localized Prostate Cancer Can Identify Subsets of African Americans With Aggressive Disease.
Published in:
JNCI: Journal of the National Cancer Institute, 2022, v. 114, n. 12, p. 1656, doi. 10.1093/jnci/djac162
By:
- Awasthi, Shivanshu;
- Grass, G Daniel;
- Torres-Roca, Javier;
- Johnstone, Peter A S;
- Pow-Sang, Julio;
- Dhillon, Jasreman;
- Park, Jong;
- Rounbehler, Robert J;
- Davicioni, Elai;
- Hakansson, Alex;
- Liu, Yang;
- Fink, Angelina K;
- DeRenzis, Amanda;
- Creed, Jordan H;
- Poch, Michael;
- Li, Roger;
- Manley, Brandon;
- Fernandez, Daniel;
- Naghavi, Arash;
- Gage, Kenneth
Publication type:
Article
Patient-Reported Outcomes in Clinical Trials Leading to Cancer Immunotherapy Drug Approvals From 2011 to 2018: A Systematic Review.
Published in:
2021
By:
- Safa, Houssein;
- Tamil, Monica;
- Spiess, Philippe E;
- Manley, Brandon;
- Pow-Sang, Julio;
- Gilbert, Scott M;
- Safa, Firas;
- Gonzalez, Brian D;
- Oswald, Laura B;
- Semaan, Adele;
- Diab, Adi;
- Chahoud, Jad;
- Gilbert, Scott
Publication type:
journal article

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