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Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2018, v. 36, n. 7, p. 660, doi. 10.1038/nbt0718-660a
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2018, v. 36, n. 2, p. 196, doi. 10.1038/nbt0218-196a
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2017, v. 35, n. 8, p. 725, doi. 10.1038/nbt.3893
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 1, p. 184, doi. 10.1038/ismej.2012.89
By:
- Malmstrom, Rex R;
- Rodrigue, Sébastien;
- Huang, Katherine H;
- Kelly, Libusha;
- Kern, Suzanne E;
- Thompson, Anne;
- Roggensack, Sara;
- Berube, Paul M;
- Henn, Matthew R;
- Chisholm, Sallie W
Publication type:
Article
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 10, p. 1252, doi. 10.1038/ismej.2010.60
By:
- Malmstrom, Rex R.;
- Coe, Allison;
- Kettler, Gregory C.;
- Martiny, Adam C.;
- Frias-Lopez, Jorge;
- Zinser, Erik R.;
- Chisholm, Sallie W.
Publication type:
Article
Genome-wide identification of bacterial plant colonization genes.
Published in:
PLoS Biology, 2017, v. 15, n. 9, p. 1, doi. 10.1371/journal.pbio.2002860
By:
- Cole, Benjamin J.;
- Feltcher, Meghan E.;
- Waters, Robert J.;
- Wetmore, Kelly M.;
- Mucyn, Tatiana S.;
- Ryan, Elizabeth M.;
- Wang, Gaoyan;
- Ul-Hasan, Sabah;
- McDonald, Meredith;
- Yoshikuni, Yasuo;
- Malmstrom, Rex R.;
- Deutschbauer, Adam M.;
- Dangl, Jeffery L.;
- Visel, Axel
Publication type:
Article
Unlocking Short Read Sequencing for Metagenomics.
Published in:
PLoS ONE, 2010, v. 5, n. 7, p. 1
By:
- Rodrigue, Sébastien;
- Materna, Arne C.;
- Timberlake, Sonia C.;
- Blackburn, Matthew C.;
- Malmstrom, Rex R.;
- Alm, Eric J.;
- Chisholm, Sallie W.
Publication type:
Article
Whole Genome Amplification and De novo Assembly of Single Bacterial Cells.
Published in:
PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0006864
By:
- Rodrigue, Sébastien;
- Malmstrom, Rex R.;
- Berlin, Aaron M.;
- Birren, Bruce W.;
- Henn, Matthew R.;
- Chisholm, Sallie W.
Publication type:
Article
Dimethylsulfoniopropionate (DMSP) assimilation by Synechococcus in the Gulf of Mexico and northwest Atlantic Ocean.
Published in:
Limnology & Oceanography, 2005, v. 50, n. 6, p. 1924, doi. 10.4319/lo.2005.50.6.1924
By:
- Malmstrom, Rex R.;
- Kiene, Ronald P.;
- Vila, Maria;
- Kirchman, David L.
Publication type:
Article
Biogeography of major bacterial groups in the Delaware Estuary.
Published in:
Limnology & Oceanography, 2005, v. 50, n. 5, p. 1697, doi. 10.4319/lo.2005.50.5.1697
By:
- Kirchman, David L.;
- Dittel, Ana I.;
- Malmstrom, Rex R.;
- Cottrell, Matthew T.
Publication type:
Article
Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico.
Published in:
Limnology & Oceanography, 2004, v. 49, n. 2, p. 597, doi. 10.4319/lo.2004.49.2.0597
By:
- Malmstrom, Rex R.;
- Kiene, Ronald P.;
- Kirchman, David L.
Publication type:
Article
BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1176751
By:
- Trexler, Ryan V.;
- Van Goethem, Marc W.;
- Goudeau, Danielle;
- Nath, Nandita;
- Malmstrom, Rex R.;
- Northen, Trent R.;
- Couradeau, Estelle
Publication type:
Article
Probing the active fraction of soil microbiomes using BONCAT-FACS.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10542-0
By:
- Couradeau, Estelle;
- Sasse, Joelle;
- Goudeau, Danielle;
- Nath, Nandita;
- Hazen, Terry C.;
- Bowen, Ben P.;
- Chakraborty, Romy;
- Malmstrom, Rex R.;
- Northen, Trent R.
Publication type:
Article
Hidden diversity of soil giant viruses.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07335-2
By:
- Schulz, Frederik;
- Alteio, Lauren;
- Goudeau, Danielle;
- Ryan, Elizabeth M.;
- Yu, Feiqiao B.;
- Malmstrom, Rex R.;
- Blanchard, Jeffrey;
- Woyke, Tanja
Publication type:
Article
Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells.
Published in:
PLoS Biology, 2024, v. 22, n. 7, p. 1, doi. 10.1371/journal.pbio.3002638
By:
- Schaible, George A.;
- Jay, Zackary J.;
- Cliff, John;
- Schulz, Frederik;
- Gauvin, Colin;
- Goudeau, Danielle;
- Malmstrom, Rex R.;
- Ruff, S. Emil;
- Edgcomb, Virginia;
- Hatzenpichler, Roland
Publication type:
Article
Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites.
Published in:
PLoS Genetics, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pgen.1010909
By:
- Villalobos-Escobedo, José Manuel;
- Mercado-Esquivias, Maria Belen;
- Adams, Catharine;
- Kauffman, W. Berkeley;
- Malmstrom, Rex R.;
- Deutschbauer, Adam M.;
- Glass, N. Louise
Publication type:
Article
HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi.
Published in:
Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01391-z
By:
- Nuccio, Erin E.;
- Blazewicz, Steven J.;
- Lafler, Marissa;
- Campbell, Ashley N.;
- Kakouridis, Anne;
- Kimbrel, Jeffrey A.;
- Wollard, Jessica;
- Vyshenska, Dariia;
- Riley, Robert;
- Tomatsu, Andy;
- Hestrin, Rachel;
- Malmstrom, Rex R.;
- Firestone, Mary;
- Pett-Ridge, Jennifer
Publication type:
Article
Ecological and genomic analyses of candidate phylum WPS‐2 bacteria in an unvegetated soil.
Published in:
Environmental Microbiology, 2020, v. 22, n. 8, p. 3143, doi. 10.1111/1462-2920.15054
By:
- Sheremet, Andriy;
- Jones, Gareth M.;
- Jarett, Jessica;
- Bowers, Robert M.;
- Bedard, Isaac;
- Culham, Cassandra;
- Eloe‐Fadrosh, Emiley A.;
- Ivanova, Natalia;
- Malmstrom, Rex R.;
- Grasby, Stephen E.;
- Woyke, Tanja;
- Dunfield, Peter F.
Publication type:
Article
Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems.
Published in:
Environmental Microbiology, 2016, v. 18, n. 11, p. 3949, doi. 10.1111/1462-2920.13392
By:
- Holmfeldt, Karin;
- Solonenko, Natalie;
- Howard ‐ Varona, Cristina;
- Moreno, Mario;
- Malmstrom, Rex R.;
- Blow, Matthew J.;
- Sullivan, Matthew B.
Publication type:
Article
Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea.
Published in:
PLoS Biology, 2023, v. 21, n. 9, p. 1, doi. 10.1371/journal.pbio.3002292
By:
- Murali, Ranjani;
- Yu, Hang;
- Speth, Daan R.;
- Wu, Fabai;
- Metcalfe, Kyle S.;
- Crémière, Antoine;
- Laso-Pèrez, Rafael;
- Malmstrom, Rex R.;
- Goudeau, Danielle;
- Woyke, Tanja;
- Hatzenpichler, Roland;
- Chadwick, Grayson L.;
- Connon, Stephanie A.;
- Orphan, Victoria J.
Publication type:
Article
Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics.
Published in:
NPJ Biofilms & Microbiomes, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41522-022-00267-2
By:
- Schweitzer, Hannah D.;
- Smith, Heidi J.;
- Barnhart, Elliott P.;
- McKay, Luke J.;
- Gerlach, Robin;
- Cunningham, Alfred B.;
- Malmstrom, Rex R.;
- Goudeau, Danielle;
- Fields, Matthew W.
Publication type:
Article
Optimizing de novo genome assembly from PCR-amplified metagenomes.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.6902
By:
- Roux, Simon;
- Trubl, Gareth;
- Goudeau, Danielle;
- Nath, Nandita;
- Couradeau, Estelle;
- Ahlgren, Nathan A.;
- Yuanchao Zhan;
- Marsan, David;
- Feng Chen;
- Fuhrman, Jed A.;
- Northen, Trent R.;
- Sullivan, Matthew B.;
- Rich, Virginia I.;
- Malmstrom, Rex R.;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
Freshwater carbon and nutrient cycles revealed through reconstructed population genomes.
Published in:
PeerJ, 2018, p. 1, doi. 10.7717/peerj.6075
By:
- Linz, Alexandra M.;
- Shaomei He;
- Stevens, Sarah L. R.;
- Anantharaman, Karthik;
- Rohwer, Robin R.;
- Malmstrom, Rex R.;
- Bertilsson, Stefan;
- McMahon, Katherine D.
Publication type:
Article
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis.
Published in:
Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0539-8
By:
- Jarett, Jessica K.;
- Nayfach, Stephen;
- Podar, Mircea;
- Inskeep, William;
- Ivanova, Natalia N.;
- Munson-McGee, Jacob;
- Schulz, Frederik;
- Young, Mark;
- Jay, Zackary J.;
- Beam, Jacob P.;
- Kyrpides, Nikos C.;
- Malmstrom, Rex R.;
- Stepanauskas, Ramunas;
- Woyke, Tanja
Publication type:
Article
Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01086-2
By:
- Roux, Simon;
- Chan, Leong-Keat;
- Egan, Rob;
- Malmstrom, Rex R.;
- McMahon, Katherine D.;
- Sullivan, Matthew B.
Publication type:
Article
Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01119-5
By:
- Boeuf, Dominique;
- Eppley, John M.;
- Mende, Daniel R.;
- Malmstrom, Rex R.;
- Woyke, Tanja;
- DeLong, Edward F.
Publication type:
Article
A pipeline for targeted metagenomics of environmental bacteria.
Published in:
Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-0790-7
By:
- Grieb, Anissa;
- Bowers, Robert M.;
- Oggerin, Monike;
- Goudeau, Danielle;
- Lee, Janey;
- Malmstrom, Rex R.;
- Woyke, Tanja;
- Fuchs, Bernhard M.
Publication type:
Article
The Epigenomic Landscape of Prokaryotes.
Published in:
PLoS Genetics, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pgen.1005854
By:
- Blow, Matthew J.;
- Clark, Tyson A.;
- Daum, Chris G.;
- Deutschbauer, Adam M.;
- Fomenkov, Alexey;
- Fries, Roxanne;
- Froula, Jeff;
- Kang, Dongwan D.;
- Malmstrom, Rex R.;
- Morgan, Richard D.;
- Posfai, Janos;
- Singh, Kanwar;
- Visel, Axel;
- Wetmore, Kelly;
- Zhao, Zhiying;
- Rubin, Edward M.;
- Korlach, Jonas;
- Pennacchio, Len A.;
- Roberts, Richard J.
Publication type:
Article

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