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The Case for Optimized Edge-Centric Tractography at Scale.
Published in:
Frontiers in Neuroinformatics, 2022, v. 16, p. 1, doi. 10.3389/fninf.2022.752471
By:
- Moon, Joseph Y.;
- Mukherjee, Pratik;
- Madduri, Ravi K.;
- Markowitz, Amy J.;
- Cai, Lanya T.;
- Palacios, Eva M.;
- Manley, Geoffrey T.;
- Bremer, Peer-Timo
Publication type:
Article
O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2018, v. 14, p. P1014, doi. 10.1016/j.jalz.2018.06.2782
By:
- Funk, Cory C.;
- Richards, Matthew A.;
- Shannon, Paul;
- Donovan-Maiye, Rory;
- Rappaport, Noa;
- Robinson, Max;
- Allen, Mariet;
- Carrasquillo, Minerva M.;
- Chakrabarty, Paramita;
- McFarland, Karen;
- Jung, Segun C.;
- Rodriguez, Alex;
- Ertekin-Taner, Nilufer;
- Golde, Todd E.;
- Hood, Leroy;
- Foster, Ian;
- Ament, Seth;
- Madduri, Ravi;
- Price, Nathan D.
Publication type:
Article
Genetic deletion of Sphk2 confers protection against Pseudomonas aeruginosa mediated differential expression of genes related to virulent infection and inflammation in mouse lung.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6367-9
By:
- Ebenezer, David L.;
- Fu, Panfeng;
- Krishnan, Yashaswin;
- Maienschein-Cline, Mark;
- Hu, Hong;
- Jung, Segun;
- Madduri, Ravi;
- Arbieva, Zarema;
- Harijith, Anantha;
- Natarajan, Viswanathan
Publication type:
Article
Identification of Novel, Replicable Genetic Risk Loci for Suicidal Thoughts and Behaviors Among US Military Veterans.
Published in:
JAMA Psychiatry, 2023, v. 80, n. 2, p. 135, doi. 10.1001/jamapsychiatry.2022.3896
By:
- Kimbrel, Nathan A.;
- Ashley-Koch, Allison E.;
- Qin, Xue J.;
- Lindquist, Jennifer H.;
- Garrett, Melanie E.;
- Dennis, Michelle F.;
- Hair, Lauren P.;
- Huffman, Jennifer E.;
- Jacobson, Daniel A.;
- Madduri, Ravi K.;
- Trafton, Jodie A.;
- Coon, Hilary;
- Docherty, Anna R.;
- Mullins, Niamh;
- Ruderfer, Douglas M.;
- Harvey, Philip D.;
- McMahon, Benjamin H.;
- Oslin, David W.;
- Beckham, Jean C.;
- Hauser, Elizabeth R.
Publication type:
Article
A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid.
Published in:
Concurrency & Computation: Practice & Experience, 2010, v. 22, n. 9, p. 1098, doi. 10.1002/cpe.1547
By:
- Tan, Wei;
- Missier, Paolo;
- Foster, Ian;
- Madduri, Ravi;
- De Roure, David;
- Goble, Carole
Publication type:
Article
Cover Image, Volume 171B, Number 4, June 2016.
Published in:
American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2016, v. 171B, n. 4, p. i, doi. 10.1002/ajmg.b.32461
By:
- Guffanti, Guia;
- Gaudi, Simona;
- Klengel, Torsten;
- Fallon, James H.;
- Mangalam, Harry;
- Madduri, Ravi;
- Rodriguez, Alex;
- DeCrescenzo, Paula;
- Glovienka, Emily;
- Sobell, Janet;
- Klengel, Claudia;
- Pato, Michele;
- Ressler, Kerry J.;
- Pato, Carlos;
- Macciardi, Fabio
Publication type:
Article
LINE1 insertions as a genomic risk factor for schizophrenia: Preliminary evidence from an affected family.
Published in:
American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2016, v. 171B, n. 4, p. 534, doi. 10.1002/ajmg.b.32437
By:
- Guffanti, Guia;
- Gaudi, Simona;
- Klengel, Torsten;
- Fallon, James H.;
- Mangalam, Harry;
- Madduri, Ravi;
- Rodriguez, Alex;
- DeCrescenzo, Paula;
- Glovienka, Emily;
- Sobell, Janet;
- Klengel, Claudia;
- Pato, Michele;
- Ressler, Kerry J.;
- Pato, Carlos;
- Macciardi, Fabio
Publication type:
Article
Correction: Reproducible big data science: A case study in continuous FAIRness.
Published in:
2023
By:
- Madduri, Ravi;
- Chard, Kyle;
- D'Arcy, Mike;
- Jung, Segun C.;
- Rodriguez, Alexis;
- Sulakhe, Dinanath;
- Deutsch, Eric;
- Funk, Cory;
- Heavner, Ben;
- Richards, Matthew;
- Shannon, Paul;
- Glusman, Gustavo;
- Price, Nathan;
- Kesselman, Carl;
- Foster, Ian
Publication type:
Correction Notice
Validation of a multi-ancestry polygenic risk score and age-specific risks of prostate cancer: A meta-analysis within diverse populations.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.78304
By:
- Fei Chen;
- Darst, Burcu F.;
- Madduri, Ravi K.;
- Rodriguez, Alex A.;
- Xin Sheng;
- Rentsch, Christopher T.;
- Andrews, Caroline;
- Wei Tang;
- Kibel, Adam S.;
- Plym, Anna;
- Cho, Kelly;
- Jalloh, Mohamed;
- Gueye, Serigne Magueye;
- Niang, Lamine;
- Ogunbiyi, Olufemi J.;
- Popoola, Olufemi;
- Adebiyi, Akindele O.;
- Aisuodionoe-Shadrach, Oseremen I.;
- Ajibola, Hafees O.;
- Jamda, Mustapha A.
Publication type:
Article
Validation of a multi-ancestry polygenic risk score and age-specific risks of prostate cancer: A meta-analysis within diverse populations.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.78304
By:
- Fei Chen;
- Darst, Burcu F.;
- Madduri, Ravi K.;
- Rodriguez, Alex A.;
- Xin Sheng;
- Rentsch, Christopher T.;
- Andrews, Caroline;
- Wei Tang;
- Kibel, Adam S.;
- Plym, Anna;
- Cho, Kelly;
- Jalloh, Mohamed;
- Gueye, Serigne Magueye;
- Niang, Lamine;
- Ogunbiyi, Olufemi J.;
- Popoola, Olufemi;
- Adebiyi, Akindele O.;
- Aisuodionoe-Shadrach, Oseremen I.;
- Ajibola, Hafees O.;
- Jamda, Mustapha A.
Publication type:
Article
CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 542, doi. 10.1186/1471-2105-11-542
By:
- Wei Tan;
- Madduri, Ravi;
- Nenadic, Alexandra;
- Soiland-Reyes, Stian;
- Sulakhe, Dinanath;
- Foster, Ian;
- Goble, Carole A.
Publication type:
Article
Big biomedical data as the key resource for discovery science.
Published in:
2015
By:
- Toga, Arthur W.;
- Foster, Ian;
- Kesselman, Carl;
- Madduri, Ravi;
- Chard, Kyle;
- Deutsch, Eric W.;
- Price, Nathan D.;
- Glusman, Gustavo;
- Heavner, Benjamin D.;
- Dinov, Ivo D.;
- Ames, Joseph;
- Van Horn, John;
- Kramer, Roger;
- Hood, Leroy
Publication type:
journal article
caGrid 1.0: an enterprise Grid infrastructure for biomedical research.
Published in:
2008
By:
- Oster S;
- Langella S;
- Hastings S;
- Ervin D;
- Madduri R;
- Phillips J;
- Kurg T;
- Siebenlist F;
- Covitz P;
- Shanbhag K;
- Foster I;
- Saltz J;
- Oster, Scott;
- Langella, Stephen;
- Hastings, Shannon;
- Ervin, David;
- Madduri, Ravi;
- Phillips, Joshua;
- Kurc, Tahsin;
- Siebenlist, Frank
Publication type:
journal article
caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research.
Published in:
Journal of the American Medical Informatics Association, 2008, v. 15, n. 2, p. 138, doi. 10.1197/jamia.M2522
By:
- Oster, Scott;
- Langella, Stephen;
- Hastings, Shannon;
- Ervin, David;
- Madduri, Ravi;
- Phillips, Joshua;
- Kurc, Tahsin;
- Siebenlist, Frank;
- Covitz, Peter;
- Shanbhag, Krishnakant;
- Foster, Ian;
- Saltz, Joel
Publication type:
Article
FAIR for AI: An interdisciplinary and international community building perspective.
Published in:
Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02298-6
By:
- Huerta, E. A.;
- Blaiszik, Ben;
- Brinson, L. Catherine;
- Bouchard, Kristofer E.;
- Diaz, Daniel;
- Doglioni, Caterina;
- Duarte, Javier M.;
- Emani, Murali;
- Foster, Ian;
- Fox, Geoffrey;
- Harris, Philip;
- Heinrich, Lukas;
- Jha, Shantenu;
- Katz, Daniel S.;
- Kindratenko, Volodymyr;
- Kirkpatrick, Christine R.;
- Lassila-Perini, Kati;
- Madduri, Ravi K.;
- Neubauer, Mark S.;
- Psomopoulos, Fotis E.
Publication type:
Article
Predictive Big Data Analytics: A Study of Parkinson’s Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations.
Published in:
PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0157077
By:
- Dinov, Ivo D.;
- Heavner, Ben;
- Tang, Ming;
- Glusman, Gustavo;
- Chard, Kyle;
- Darcy, Mike;
- Madduri, Ravi;
- Pa, Judy;
- Spino, Cathie;
- Kesselman, Carl;
- Foster, Ian;
- Deutsch, Eric W.;
- Price, Nathan D.;
- Van Horn, John D.;
- Ames, Joseph;
- Clark, Kristi;
- Hood, Leroy;
- Hampstead, Benjamin M.;
- Dauer, William;
- Toga, Arthur W.
Publication type:
Article
Combining the Power of Taverna and caGrid: Scientific Work flows that Enable Web-Scale Collaboration.
Published in:
IEEE Internet Computing, 2008, v. 12, n. 6, p. 61, doi. 10.1109/MIC.2008.120
By:
- Wei Tan;
- Jan Foster;
- Madduri, Ravi
Publication type:
Article
FACE-IT: A science gateway for food security research.
Published in:
Concurrency & Computation: Practice & Experience, 2015, v. 27, n. 16, p. 4423, doi. 10.1002/cpe.3540
By:
- Montella, Raffaele;
- Kelly, David;
- Xiong, Wei;
- Brizius, Alison;
- Elliott, Joshua;
- Madduri, Ravi;
- Maheshwari, Ketan;
- Porter, Cheryl;
- Vilter, Peter;
- Wilde, Michael;
- Zhang, Meng;
- Foster, Ian
Publication type:
Article
The Globus Galaxies platform: delivering science gateways as a service.
Published in:
Concurrency & Computation: Practice & Experience, 2015, v. 27, n. 16, p. 4344, doi. 10.1002/cpe.3486
By:
- Madduri, Ravi;
- Chard, Kyle;
- Chard, Ryan;
- Lacinski, Lukasz;
- Rodriguez, Alex;
- Sulakhe, Dinanath;
- Kelly, David;
- Dave, Utpal;
- Foster, Ian
Publication type:
Article
Experiences building Globus Genomics: a next-generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services.
Published in:
Concurrency & Computation: Practice & Experience, 2014, v. 26, n. 13, p. 2266, doi. 10.1002/cpe.3274
By:
- Madduri, Ravi K.;
- Sulakhe, Dinanath;
- Lacinski, Lukasz;
- Liu, Bo;
- Rodriguez, Alex;
- Chard, Kyle;
- Dave, Utpal J.;
- Foster, Ian T.
Publication type:
Article
Reproducible big data science: A case study in continuous FAIRness.
Published in:
PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0213013
By:
- Madduri, Ravi;
- Chard, Kyle;
- D’Arcy, Mike;
- Jung, Segun C.;
- Rodriguez, Alexis;
- Sulakhe, Dinanath;
- Deutsch, Eric;
- Funk, Cory;
- Heavner, Ben;
- Richards, Matthew;
- Shannon, Paul;
- Glusman, Gustavo;
- Price, Nathan;
- Kesselman, Carl;
- Foster, Ian
Publication type:
Article
Genome-wide association study identifies four pan-ancestry loci for suicidal ideation in the Million Veterans Program.
Published in:
PLoS Genetics, 2023, v. 18, n. 3, p. 1, doi. 10.1371/journal.pgen.1010623
By:
- Ashley-Koch, Allison E.;
- Kimbrel, Nathan A.;
- Qin, Xue J.;
- Lindquist, Jennifer H.;
- Garrett, Melanie E.;
- Dennis, Michelle F.;
- Hair, Lauren P.;
- Huffman, Jennifer E.;
- Jacobson, Daniel A.;
- Madduri, Ravi K.;
- Coon, Hilary;
- Docherty, Anna R.;
- Kang, Jooeun;
- Mullins, Niamh;
- Ruderfer, Douglas M.;
- Harvey, Philip D.;
- McMahon, Benjamin H.;
- Oslin, David W.;
- Hauser, Elizabeth R.;
- Hauser, Michael A.
Publication type:
Article
A novel MERTK mutation causing retinitis pigmentosa.
Published in:
Graefe's Archive of Clinical & Experimental Ophthalmology, 2017, v. 255, n. 8, p. 1613, doi. 10.1007/s00417-017-3679-9
By:
- Al-khersan, Hasenin;
- Shah, Kaanan;
- Jung, Segun;
- Rodriguez, Alex;
- Madduri, Ravi;
- Grassi, Michael
Publication type:
Article
Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.
Published in:
Bioinformatics, 2015, v. 31, n. 2, p. 187, doi. 10.1093/bioinformatics/btu591
By:
- Trubetskoy, Vassily;
- Rodriguez, Alex;
- Dave, Uptal;
- Campbell, Nicholas;
- Crawford, Emily L.;
- Cook, Edwin H.;
- Sutcliffe, James S.;
- Foster, Ian;
- Madduri, Ravi;
- Cox, Nancy J.;
- Davis, Lea K.
Publication type:
Article

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