Works matching AU Li, Daofeng

Results: 45

A New Self-Certified Signature Scheme Based on NTRUS ing for Smart Mobile Communications.

Published in:

Wireless Personal Communications, 2017, v. 96, n. 3, p. 4263, doi. 10.1007/s11277-017-4385-y

By:

Li, Daofeng;
Chen, Haiqiang;
Zhong, Cheng;
Li, Taoshen;
Wang, Feng

Publication type:

Article

Embryonic vitamin D deficiency programs hematopoietic stem cells to induce type 2 diabetes.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38849-z

By:

Oh, Jisu;
Riek, Amy E.;
Bauerle, Kevin T.;
Dusso, Adriana;
McNerney, Kyle P.;
Barve, Ruteja A.;
Darwech, Isra;
Sprague, Jennifer E.;
Moynihan, Clare;
Zhang, Rong M.;
Kutz, Greta;
Wang, Ting;
Xing, Xiaoyun;
Li, Daofeng;
Mrad, Marguerite;
Wigge, Nicholas M.;
Castelblanco, Esmeralda;
Collin, Alejandro;
Bambouskova, Monika;
Head, Richard D.

Publication type:

Article

Distribution of the Macroinvertebrate Communities in the Xiangxi River System and Relationships with Environmental Factors.

Published in:

Journal of Freshwater Ecology, 2005, v. 20, n. 2, p. 233, doi. 10.1080/02705060.2005.9664962

By:

Xiaodong Qu;
Tao Tang;
Zhicai Xie;
Lin Ye;
Daofeng Li;
Qinghua Cai

Publication type:

Article

Benthic Algae of the Xiangxi River, China.

Published in:

Journal of Freshwater Ecology, 2004, v. 19, n. 4, p. 597, doi. 10.1080/02705060.2004.9664740

By:

Tao Tang;
Xiaodong Qu;
Daofeng Li;
Ruiqiu Liu;
Zhicai Xie;
Qinghua Cai

Publication type:

Article

PMRD: plant microRNA database.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D806, doi. 10.1093/nar/gkp818

By:

Zhenhai Zhang;
Jingyin Yu;
Daofeng Li;
Zuyong Zhang;
Fengxia Liu;
Xin Zhou;
Tao Wang;
Yi Ling;
Zhen Su

Publication type:

Article

ResNeSt-biGRU: An Intrusion Detection Model Based on Internet of Things.

Published in:

Computers, Materials & Continua, 2024, v. 79, n. 1, p. 1005, doi. 10.32604/cmc.2024.047143

By:

Yan Xiang;
Daofeng Li;
Xinyi Meng;
Chengfeng Dong;
Guanglin Qin

Publication type:

Article

Provably Secure APK Redevelopment Authorization Scheme in the Standard Model.

Published in:

Computers, Materials & Continua, 2018, v. 56, n. 3, p. 447, doi. 10.3970/cmc.2018.03692

By:

Daofeng Li;
Mingxing Luo;
Bowen Zhao;
Xiangdong Che

Publication type:

Article

Unsupervised Machine Learning Identify Cis‐Regulatory Network Involved in Neurodegeneration.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.082808

By:

Goncalves, Tassia Mangetti;
Xu, Jason;
Li, Daofeng;
Gabel, Harrison;
Wang, Ting;
Zhao, Guoyan

Publication type:

Article

The qBED track: a novel genome browser visualization for point processes.

Published in:

Bioinformatics, 2021, v. 37, n. 8, p. 1168, doi. 10.1093/bioinformatics/btaa771

By:

Moudgil, Arnav;
Li, Daofeng;
Hsu, Silas;
Purushotham, Deepak;
Wang, Ting;
Mitra, Robi D

Publication type:

Article

methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2206, doi. 10.1093/bioinformatics/btu191

By:

Zhou, Xin;
Li, Daofeng;
Lowdon, Rebecca F.;
Costello, Joseph F.;
Wang, Ting

Publication type:

Article

HertDroid: Android Malware Detection Method with Influential Node Filter and Heterogeneous Graph Transformer.

Published in:

Applied Sciences (2076-3417), 2024, v. 14, n. 8, p. 3150, doi. 10.3390/app14083150

By:

Meng, Xinyi;
Li, Daofeng

Publication type:

Article

methylGrapher: genome-graph-based processing of DNA methylation data from whole genome bisulfite sequencing.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 3, p. 1, doi. 10.1093/nar/gkaf028

By:

Zhang, Wenjin;
Macias-Velasco, Juan F;
Zhuo, Xiaoyu;
Belter, Edward A;
Tomlinson, Chad;
Garza, John;
Tekkey, Nina;
Li, Daofeng;
Wang, Ting

Publication type:

Article

BGP Neighbor Trust Establishment Mechanism Based on the Bargaining Game.

Published in:

Information (2078-2489), 2021, v. 12, n. 3, p. 110, doi. 10.3390/info12030110

By:

Li, Peipei;
Lu, Bin;
Li, Daofeng;
Kambourakis, Georgios

Publication type:

Article

Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02493-x

By:

Jang, Hyo Sik;
Chen, Yujie;
Ge, Jiaxin;
Wilkening, Alicia N.;
Hou, Yiran;
Lee, Hyung Joo;
Choi, You Rim;
Lowdon, Rebecca F.;
Xing, Xiaoyun;
Li, Daofeng;
Kaufman, Charles K.;
Johnson, Stephen L.;
Wang, Ting

Publication type:

Article

A non‐randomized procedure for large‐scale heterogeneous multiple discrete testing based on randomized tests.

Published in:

Biometrics, 2019, v. 75, n. 2, p. 638, doi. 10.1111/biom.12996

By:

Dai, Xiaoyu;
Lin, Nan;
Li, Daofeng;
Wang, Ting

Publication type:

Article

Cloning and characterization of a functional flavanone-3ß-hydroxylase gene from Medicago truncatula.

Published in:

Molecular Biology Reports, 2010, v. 37, n. 7, p. 3283, doi. 10.1007/s11033-009-9913-8

By:

Xiaoye Shen;
Martens, Stefan;
Mingliang Chen;
Daofeng Li;
Jiangli Dong;
Tao Wang

Publication type:

Article

Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos.

Published in:

Nature Communications, 2015, v. 6, n. 2, p. 6315, doi. 10.1038/ncomms7315

By:

Lee, Hyung Joo;
Lowdon, Rebecca F.;
Maricque, Brett;
Zhang, Bo;
Stevens, Michael;
Li, Daofeng;
Johnson, Stephen L.;
Wang, Ting

Publication type:

Article

Intermediate DNA methylation is a conserved signature of genome regulation.

Published in:

Nature Communications, 2015, v. 6, n. 2, p. 6363, doi. 10.1038/ncomms7363

By:

Elliott, GiNell;
Hong, Chibo;
Xing, Xiaoyun;
Zhou, Xin;
Li, Daofeng;
Coarfa, Cristian;
Bell, Robert J.A.;
Maire, Cecile L.;
Ligon, Keith L.;
Sigaroudinia, Mahvash;
Gascard, Philippe;
Tlsty, Thea D.;
Harris, R. Alan;
Schalkwyk, Leonard C.;
Bilenky, Misha;
Mill, Jonathan;
Farnham, Peggy J.;
Kellis, Manolis;
Marra, Marco A.;
Milosavljevic, Aleksandar

Publication type:

Article

Regulatory network decoded from epigenomes of surface ectoderm-derived cell types.

Published in:

Nature Communications, 2014, v. 5, n. 11, p. 5442, doi. 10.1038/ncomms6442

By:

Lowdon, Rebecca F.;
Zhang, Bo;
Bilenky, Misha;
Mauro, Thea;
Li, Daofeng;
Gascard, Philippe;
Sigaroudinia, Mahvash;
Farnham, Peggy J.;
Bastian, Boris C.;
Tlsty, Thea D.;
Marra, Marco A.;
Hirst, Martin;
Costello, Joseph F.;
Wang, Ting;
Cheng, Jeffrey B.

Publication type:

Article

DNA unmethylome profiling by covalent capture of CpG sites.

Published in:

Nature Communications, 2013, v. 4, n. 7, p. 2190, doi. 10.1038/ncomms3190

By:

Kriukienė, Edita;
Labrie, Viviane;
Khare, Tarang;
Urbanavičiūtė, Giedrė;
Lapinaitė, Audronė;
Koncevičius, Karolis;
Li, Daofeng;
Wang, Ting;
Pai, Shraddha;
Ptak, Carolyn;
Gordevičius, Juozas;
Wang, Sun-Chong;
Petronis, Artūras;
Klimašauskas, Saulius

Publication type:

Article

A high-fat diet alters genome-wide DNA methylation and gene expression in SM/J mice.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5327-0

By:

Keleher, Madeline Rose;
Zaidi, Rabab;
Hicks, Lauren;
Shah, Shyam;
Cheverud, James M.;
Xing, Xiaoyun;
Li, Daofeng;
Wang, Ting

Publication type:

Article

Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4115-6

By:

Jia Zhou;
Sears, Renee L.;
Xiaoyun Xing;
Bo Zhang;
Daofeng Li;
Rockweiler, Nicole B.;
Hyo Sik Jang;
Choudhary, Mayank N. K.;
Hyung Joo Lee;
Lowdon, Rebecca F.;
Arand, Jason;
Tabers, Brianne;
Gu, C. Charles;
Cicero, Theodore J.;
Ting Wang

Publication type:

Article

Diel vertical migration of Peridiniopsis niei, Liu et al., a new species of dinoflagellates in an eutrophic bay of Three-Gorge Reservoir, China.

Published in:

Aquatic Ecology, 2010, v. 44, n. 2, p. 387, doi. 10.1007/s10452-009-9298-8

By:

Yaoyang Xu;
Qinghua Cai;
Lan Wang;
Linghui Kong;
Daofeng Li

Publication type:

Article

Induction of hematopoietic and endothelial cell program orchestrated by ETS transcription factor ER71/ ETV2.

Published in:

EMBO Reports, 2015, v. 16, n. 5, p. 654, doi. 10.15252/embr.201439939

By:

Liu, Fang;
Li, Daofeng;
Yu, Yik Yeung Lawrence;
Kang, Inyoung;
Cha, Min‐Ji;
Kim, Ju Young;
Park, Changwon;
Watson, Dennis K;
Wang, Ting;
Choi, Kyunghee

Publication type:

Article

AST-DF: A New Webshell Detection Method Based on Abstract Syntax Tree and Deep Forest.

Published in:

Electronics (2079-9292), 2024, v. 13, n. 8, p. 1482, doi. 10.3390/electronics13081482

By:

Dong, Chengfeng;
Li, Daofeng

Publication type:

Article

Provable Secure Attribute-Based Proxy Signature Over Lattice Small Integer Solution Problem in Random Oracle Model.

Published in:

Electronics (2079-9292), 2023, v. 12, n. 7, p. 1619, doi. 10.3390/electronics12071619

By:

Wei, Lulu;
Li, Daofeng;
Liu, Zhiqiang

Publication type:

Article

Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 4, p. 973, doi. 10.1534/g3.115.025437

By:

Junchen Gu;
Stevens, Michael;
Xiaoyun Xing;
Daofeng Li;
Bo Zhang;
Payton, Jacqueline E.;
Oltz, Eugene M.;
Jarvis, James N.;
Kaiyu Jiang;
Cicero, Theodore;
Costello, Joseph F.;
Ting Wang

Publication type:

Article

Maternal high-fat diet associated with altered gene expression, DNA methylation, and obesity risk in mouse offspring.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192606

By:

Keleher, Madeline Rose;
Zaidi, Rabab;
Shah, Shyam;
Oakley, M. Elsa;
Pavlatos, Cassondra;
El Idrissi, Samir;
Xing, Xiaoyun;
Li, Daofeng;
Wang, Ting;
Cheverud, James M.

Publication type:

Article

DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.

Published in:

Nature Genetics, 2013, v. 45, n. 7, p. 836, doi. 10.1038/ng.2649

By:

Xie, Mingchao;
Hong, Chibo;
Zhang, Bo;
Lowdon, Rebecca F;
Xing, Xiaoyun;
Li, Daofeng;
Zhou, Xin;
Lee, Hyung Joo;
Maire, Cecile L;
Ligon, Keith L;
Gascard, Philippe;
Sigaroudinia, Mahvash;
Tlsty, Thea D;
Kadlecek, Theresa;
Weiss, Arthur;
O'Geen, Henriette;
Farnham, Peggy J;
Madden, Pamela A F;
Mungall, Andrew J;
Tam, Angela

Publication type:

Article

Exploring long-range genome interactions using the WashU Epigenome Browser.

Published in:

Nature Methods, 2013, v. 10, n. 5, p. 375, doi. 10.1038/nmeth.2440

By:

Zhou, Xin;
Lowdon, Rebecca F;
Li, Daofeng;
Lawson, Heather A;
Madden, Pamela A F;
Costello, Joseph F;
Wang, Ting

Publication type:

Article

The Human Epigenome Browser at Washington University.

Published in:

Nature Methods, 2011, v. 8, n. 12, p. 989, doi. 10.1038/nmeth.1772

By:

Zhou, Xin;
Maricque, Brett;
Xie, Mingchao;
Li, Daofeng;
Sundaram, Vasavi;
Martin, Eric A;
Koebbe, Brian C;
Nielsen, Cydney;
Hirst, Martin;
Farnham, Peggy;
Kuhn, Robert M;
Zhu, Jingchun;
Smirnov, Ivan;
Kent, W James;
Haussler, David;
Madden, Pamela A F;
Costello, Joseph F;
Wang, Ting

Publication type:

Article

BAllC and BAllCools: efficient formatting and operating for single-cell DNA methylation data.

Published in:

Bioinformatics, 2024, v. 40, n. 7, p. 1, doi. 10.1093/bioinformatics/btae404

By:

Tian, Wei;
Ding, Wubin;
Shen, Jiawei;
Li, Daofeng;
Wang, Ting;
Ecker, Joseph R

Publication type:

Article

Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting Calling Cards data.

Published in:

Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae070

By:

Guo, Juanru;
Zhang, Wenjin;
Chen, Xuhua;
Yen, Allen;
Chen, Lucy;
Shively, Christian A;
Li, Daofeng;
Wang, Ting;
Dougherty, Joseph D;
Mitra, Robi D

Publication type:

Article

A New Method for WebShell Detection Based on Bidirectional GRU and Attention Mechanism.

Published in:

Security & Communication Networks, 2022, p. 1, doi. 10.1155/2022/3434920

By:

Liu, Zhiqiang;
Li, Daofeng;
Wei, Lulu

Publication type:

Article

Provably Secure Lattice-Based Self-Certified Signature Scheme.

Published in:

Security & Communication Networks, 2021, v. 2021, p. 1, doi. 10.1155/2021/2459628

By:

Yang, Qiang;
Li, Daofeng

Publication type:

Article

Potato virus Y HC-Pro Reduces the ATPase Activity of NtMinD, Which Results in Enlarged Chloroplasts in HC-Pro Transgenic Tobacco.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136210

By:

Tu, Yayi;
Zhang, Zhenqian;
Li, Daofeng;
Li, Heng;
Dong, Jiangli;
Wang, Tao

Publication type:

Article

DACFL: Dynamic Average Consensus-Based Federated Learning in Decentralized Sensors Network.

Published in:

Sensors (14248220), 2022, v. 22, n. 9, p. 3317, doi. 10.3390/s22093317

By:

Chen, Zhikun;
Li, Daofeng;
Zhu, Jinkang;
Zhang, Sihai

Publication type:

Article

The NIEHS TaRGET II Consortium and environmental epigenomics.

Published in:

Nature Biotechnology, 2018, v. 36, n. 3, p. 225, doi. 10.1038/nbt.4099

By:

Wang, Ting;
Pehrsson, Erica C;
Purushotham, Deepak;
Li, Daofeng;
Zhuo, Xiaoyu;
Zhang, Bo;
Lawson, Heather A;
Province, Michael A;
Krapp, Christopher;
Lan, Yemin;
Coarfa, Cristian;
Katz, Tiffany A;
Tang, Wan Yee;
Wang, Zhibin;
Biswal, Shyam;
Rajagopalan, Sanjay;
Colacino, Justin A;
Tsai, Zing Tsung-Yeh;
Sartor, Maureen A;
Neier, Kari

Publication type:

Article

Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser.

Published in:

Nature Biotechnology, 2015, v. 33, n. 4, p. 345, doi. 10.1038/nbt.3158

By:

Zhou, Xin;
Li, Daofeng;
Zhang, Bo;
Lowdon, Rebecca F;
Rockweiler, Nicole B;
Sears, Renee L;
Madden, Pamela A F;
Smirnov, Ivan;
Costello, Joseph F;
Wang, Ting

Publication type:

Article

WashU Epigenome Browser update 2022.

Published in:

Nucleic Acids Research, 2022, v. 50, n. W1, p. W774, doi. 10.1093/nar/gkac238

By:

Li, Daofeng;
Purushotham, Deepak;
Harrison, Jessica K;
Hsu, Silas;
Zhuo, Xiaoyu;
Fan, Changxu;
Liu, Shane;
Xu, Vincent;
Chen, Samuel;
Xu, Jason;
Ouyang, Shinyi;
Wu, Angela S;
Wang, Ting

Publication type:

Article

WashU Epigenome Browser update 2019.

Published in:

Nucleic Acids Research, 2019, v. 47, n. W1, p. W158, doi. 10.1093/nar/gkz348

By:

Li, Daofeng;
Hsu, Silas;
Purushotham, Deepak;
Sears, Renee L;
Wang, Ting

Publication type:

Article

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1519-9

By:

Wang, Yanli;
Song, Fan;
Zhang, Bo;
Zhang, Lijun;
Xu, Jie;
Kuang, Da;
Li, Daofeng;
Choudhary, Mayank N. K.;
Li, Yun;
Hu, Ming;
Hardison, Ross;
Wang, Ting;
Yue, Feng

Publication type:

Article

Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses.

Published in:

BMC Plant Biology, 2011, v. 11, n. 1, p. 109, doi. 10.1186/1471-2229-11-109

By:

Daofeng Li;
Yunqin Zhang;
Xiaona Hu;
Xiaoye Shen;
Lei Ma;
Zhen Su;
Tao Wang;
Jiangli Dong

Publication type:

Article

De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stressresponsive pathway.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2019-x

By:

Zhenyan Miao;
Wei Xu;
Daofeng Li;
Xiaona Hu;
Jiaxing Liu;
Rongxue Zhang;
Zongyong Tong;
Jiangli Dong;
Zhen Su;
Liwei Zhang;
Min Sun;
Wenjie Li;
Zhenglin Du;
Songnian Hu;
Tao Wang

Publication type:

Article

An expression database for roots of the model legume Medicago truncatula under salt stress.

Published in:

BMC Genomics, 2009, v. 10, p. 517, doi. 10.1186/1471-2164-10-517

By:

Daofeng Li;
Zhen Su;
Jiangli Dong;
Tao Wang

Publication type:

Article