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Improved therapy-success prediction with GSS estimated from clinical HIV-1 sequences.
- Published in:
- Journal of the International AIDS Society, 2014, v. 17, p. n/a, doi. 10.7448/IAS.17.4.19743
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- Publication type:
- Article
Analysis of mutational history of multidrug‐resistant genotypes with a mutagenetic tree model.
- Published in:
- Journal of Medical Virology, 2023, v. 95, n. 1, p. 1, doi. 10.1002/jmv.28389
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- Publication type:
- Article
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W581, doi. 10.1093/nar/gkw211
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- Publication type:
- Article
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. W1, p. W501, doi. 10.1093/nar/gku457
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- Publication type:
- Article
BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W551, doi. 10.1093/nar/gkr312
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- Publication type:
- Article
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W755, doi. 10.1093/nar/gkq405
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- Publication type:
- Article
Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 10, p. e55, doi. 10.1093/nar/gkn122
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- Publication type:
- Article
Mutations in the MutSα interaction interface of MLH1 can abolish DNA mismatch repair.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 22, p. 6574, doi. 10.1093/nar/gkl944
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- Publication type:
- Article
Bioinformatics prediction of HIV coreceptor usage.
- Published in:
- Nature Biotechnology, 2007, v. 25, n. 12, p. 1407, doi. 10.1038/nbt1371
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- Publication type:
- Article
Clinical Significance of In Vitro Replication-- Enhancing Mutations of the Hepatitis C Virus (H CV) Replicon in Patients with Chronic HCV Infection.
- Published in:
- Journal of Infectious Diseases, 2005, v. 192, n. 10, p. 1710, doi. 10.1086/497142
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- Publication type:
- Article
Estimating HIV Evolutionary Pathways and the Genetic Barrier to Drug Resistance.
- Published in:
- Journal of Infectious Diseases, 2005, v. 191, n. 11, p. 1953, doi. 10.1086/430005
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- Publication type:
- Article
A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1.
- Published in:
- Nature Genetics, 2007, v. 39, n. 2, p. 207, doi. 10.1038/ng1954
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- Publication type:
- Article
Sarcoidosis is associated with a truncating splice site mutation in BTNL2.
- Published in:
- Nature Genetics, 2005, v. 37, n. 4, p. 357, doi. 10.1038/ng1519
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- Publication type:
- Article
Genetic variation in DLG5 is associated with inflammatory bowel disease.
- Published in:
- Nature Genetics, 2004, v. 36, n. 5, p. 476, doi. 10.1038/ng1345
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- Publication type:
- Article
Comprehensive analysis of DNA methylation data with RnBeads.
- Published in:
- Nature Methods, 2014, v. 11, n. 11, p. 1138, doi. 10.1038/nmeth.3115
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- Publication type:
- Article
Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer.
- Published in:
- Molecular Cancer, 2007, v. 6, p. 14, doi. 10.1186/1476-4598-6-14
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- Publication type:
- Article
MicroRNA Transcription Start Site Prediction with Multi-objective Feature Selection.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 1, p. 1, doi. 10.2202/1544-6115.1743
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- Publication type:
- Article
Hierarchical Bayes Model for Predicting Effectiveness of HIV Combination Therapies.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 3, p. 1, doi. 10.1515/1544-6115.1769
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- Publication type:
- Article
Learning from Past Treatments and Their Outcome Improves Prediction of In Vivo Response to Anti-HIV Therapy.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2011, v. 10, n. 1, p. 1, doi. 10.2202/1544-6115.1604
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- Publication type:
- Article
Model Selection for Mixtures of Mutagenetic Trees.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2006, v. 5, n. 1, p. 1, doi. 10.2202/1544-6115.1164
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- Publication type:
- Article
Calculating the Statistical Significance of Changes in Pathway Activity From Gene Expression Data.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2004, v. 3, n. 1, p. 1
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- Publication type:
- Article
Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae327
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- Publication type:
- Article
Parameters Influencing Baseline HIV-1 Genotypic Tropism Testing Related to Clinical Outcome in Patients on Maraviroc.
- Published in:
- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0125502
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- Publication type:
- Article
Inferring Short-Range Linkage Information from Sequencing Chromatograms.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081687
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- Publication type:
- Article
DNA Methylation Patterns Facilitate the Identification of MicroRNA Transcription Start Sites: A Brain-Specific Study.
- Published in:
- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066722
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- Publication type:
- Article
Only Slight Impact of Predicted Replicative Capacity for Therapy Response Prediction.
- Published in:
- PLoS ONE, 2010, v. 5, n. 2, p. 1, doi. 10.1371/journal.pone.0009044
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- Publication type:
- Article
V3 Loop Sequence Space Analysis Suggests Different Evolutionary Patterns of CCR5- and CXCR4-Tropic HIV.
- Published in:
- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007387
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- Publication type:
- Article
Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy.
- Published in:
- PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003470
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- Publication type:
- Article
Alignment of Non-Covalent Interactions at Protein-Protein Interfaces.
- Published in:
- PLoS ONE, 2008, v. 3, n. 4, p. 1, doi. 10.1371/journal.pone.0001926
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- Publication type:
- Article
Large oligomeric complex structures can be computationally assembled by efficiently combining docked interfaces.
- Published in:
- Proteins, 2015, v. 83, n. 10, p. 1887, doi. 10.1002/prot.24873
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- Publication type:
- Article
Docking and scoring with alternative side-chain conformations.
- Published in:
- Proteins, 2009, v. 74, n. 3, p. 712, doi. 10.1002/prot.22189
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- Publication type:
- Article
Structural modeling of ataxin-3 reveals distant homology to adaptins.
- Published in:
- Proteins, 2003, v. 50, n. 2, p. 355, doi. 10.1002/prot.10280
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- Publication type:
- Article
Evaluation of the F LEXX incremental construction algorithm for protein-ligand docking.
- Published in:
- Proteins, 1999, v. 37, n. 2, p. 228, doi. 10.1002/(SICI)1097-0134(19991101)37:2<228::AID-PROT8>3.0.CO;2-8
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- Publication type:
- Article
The particle concept: placing discrete water molecules during protein-ligand docking predictions.
- Published in:
- Proteins, 1999, v. 34, n. 1, p. 17, doi. 10.1002/(SICI)1097-0134(19990101)34:1<17::AID-PROT3>3.0.CO;2-1
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- Publication type:
- Article
CASP2 experiences with docking flexible ligands using F LEXX.
- Published in:
- Proteins, 1997, v. 29, n. S1, p. 221, doi. 10.1002/(SICI)1097-0134(1997)1+<221::AID-PROT30>3.0.CO;2-O
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- Publication type:
- Article
Improved Prediction of HIV-1 Coreceptor Usage with Sequence Information from the Second Hypervariable Loop of gp120.
- Published in:
- Journal of Infectious Diseases, 2010, v. 202, n. 9, p. 1435, doi. 10.1086/656600
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- Publication type:
- Article
Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database.
- Published in:
- Journal of Infectious Diseases, 2009, v. 199, n. 7, p. 999, doi. 10.1086/597305
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- Publication type:
- Article
Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis.
- Published in:
- 2011
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- Publication type:
- journal article
Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis.
- Published in:
- BMC Medical Informatics & Decision Making, 2011, v. 11, n. 1, p. 30, doi. 10.1186/1472-6947-11-30
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- Publication type:
- Article
Computational analysis of human protein interaction networks.
- Published in:
- Proteomics, 2007, v. 7, n. 15, p. 2541, doi. 10.1002/pmic.200600924
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- Publication type:
- Article
Cohort Profile: A European Multidisciplinary Network for the Fight against HIV Drug Resistance (EuResist Network).
- Published in:
- Tropical Medicine & Infectious Disease, 2023, v. 8, n. 5, p. 243, doi. 10.3390/tropicalmed8050243
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- Publication type:
- Article
Structural and functional analysis of a novel mutation of CYP21B in a heterozygote carrier of 21-hydroxylase deficiency.
- Published in:
- Human Genetics, 2005, v. 117, n. 6, p. 558, doi. 10.1007/s00439-005-1339-3
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- Publication type:
- Article
Entropy gain due to water release upon ligand binding.
- Published in:
- 2014
- By:
- Publication type:
- Abstract
A general concept for consistent documentation of computational analyses.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav050
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- Publication type:
- Article
A new CARD15 mutation in Blau syndrome.
- Published in:
- European Journal of Human Genetics, 2005, v. 13, n. 6, p. 742, doi. 10.1038/sj.ejhg.5201404
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- Publication type:
- Article
Predicting MHC class I epitopes in large datasets.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 90, doi. 10.1186/1471-2105-11-90
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- Publication type:
- Article
Stability analysis of mixtures of mutagenetic trees.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-165
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- Publication type:
- Article
Confirmation of human protein interaction data by human expression data.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 112, doi. 10.1186/1471-2105-6-112
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- Publication type:
- Article
Corrigendum to: Family-joining: A fast distance-based method for constructing generally labeled trees.
- Published in:
- Molecular Biology & Evolution, 2020, v. 37, n. 6, p. 1845, doi. 10.1093/molbev/msz281
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- Publication type:
- Article
Family-Joining: A Fast Distance-Based Method for Constructing Generally Labeled Trees.
- Published in:
- Molecular Biology & Evolution, 2016, v. 33, n. 10, p. 2720, doi. 10.1093/molbev/msw123
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- Publication type:
- Article