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Expansion of a Subset Within the C2 Subclade of Escherichia coli Sequence Type 131 (ST131) Is Driving the Increasing Rates of Aminoglycoside Resistance.
- Published in:
- Open Forum Infectious Diseases, 2020, v. 7, n. 11, p. 1, doi. 10.1093/ofid/ofaa410
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- Article
Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods.
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- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0417-7
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- Article
Nanopore Sequencing Discloses Compositional Quality of Commercial Probiotic Feed Supplements.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-31626-4
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- Article
Final report of ENGAGE ‐ Establishing Next Generation sequencing Ability for Genomic analysis in Europe.
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- EFSA Supporting Publications, 2018, v. 15, n. 6, p. N.PAG, doi. 10.2903/sp.efsa.2018.EN-1431
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- Publication type:
- Article
Comparative genomics of quinolone‐resistant and susceptible Campylobacter jejuni of poultry origin from major poultry producing European countries (GENCAMP).
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- EFSA Supporting Publications, 2018, v. 15, n. 5, p. N.PAG, doi. 10.2903/sp.efsa.2018.EN-1398
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- Publication type:
- Article
One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.804627
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- Publication type:
- Article
Multiplex PCR for detection of plasmid-mediated colistin resistance determinants, mcr-1, mcr-2, mcr-3, mcr-4 and mcr-5 for surveillance purposes.
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- Eurosurveillance (15607917), 2018, v. 23, n. 6, p. 29, doi. 10.2807/1560-7917.ES.2018.23.6.17-00672
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- Article
Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms.
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- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104984
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- Article
Evaluation of Whole Genome Sequencing for Outbreak Detection of <i>Salmonella enterica</i>.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087991
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- Article
The Role of the <i>st313-td</i> Gene in Virulence of <i>Salmonella</i> Typhimurium ST313.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0084566
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- Article
Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo.
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- Journal of Infection in Developing Countries, 2013, v. 7, n. 10, p. 696, doi. 10.3855/jidc.3328
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- Article
The dynamics of bla<sub>TEM</sub> resistance genes in Salmonella Typhi.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-74321-8
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- Publication type:
- Article
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08853-3
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- Article
Various arrangements of mobile genetic elements among CC147 subpopulations of Klebsiella pneumoniae harboring bla<sub>NDM-1</sub>: a comparative genomic analysis of carbapenem resistant strains.
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- Journal of Biomedical Science, 2023, v. 30, n. 1, p. 1, doi. 10.1186/s12929-023-00960-0
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- Article
A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more.
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- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0242987
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- Article
Campylobacter jejuni ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America.
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- Zoonoses & Public Health, 2021, v. 68, n. 6, p. 638, doi. 10.1111/zph.12853
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- Article
Application of Whole‐Genome Sequences and Machine Learning in Source Attribution of Salmonella Typhimurium.
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- Risk Analysis: An International Journal, 2020, v. 40, n. 9, p. 1693, doi. 10.1111/risa.13510
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- Article
Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Next‐Generation Sequencing Data.
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- Risk Analysis: An International Journal, 2019, v. 39, n. 6, p. 1397, doi. 10.1111/risa.13239
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- Article
Molecular Characterization of Staphylococcus aureus Isolated from Raw Milk and Humans in Eastern Tanzania: Genetic Diversity and Inter-Host Transmission.
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- Microorganisms, 2023, v. 11, n. 6, p. 1505, doi. 10.3390/microorganisms11061505
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- Article
Investigation of a Listeria monocytogenes Chromosomal Immigration Control Region Reveals Diverse Restriction Modification Systems with Complete Sequence Type Conservation.
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- Microorganisms, 2023, v. 11, n. 3, p. 699, doi. 10.3390/microorganisms11030699
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- Article
Occurrence and Characterisation of Colistin-Resistant Escherichia coli in Raw Meat in Southern Italy in 2018–2020.
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- Microorganisms, 2022, v. 10, n. 9, p. 1805, doi. 10.3390/microorganisms10091805
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- Article
Quantitative Microbial Risk Assessment Based on Whole Genome Sequencing Data: Case of Listeria monocytogenes.
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- Microorganisms, 2020, v. 8, n. 11, p. 1772, doi. 10.3390/microorganisms8111772
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- Article
Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing.
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- BioMed Research International, 2018, v. 2018, p. 1, doi. 10.1155/2018/2087693
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- Article
Genomic insights into Vibrio cholerae O1 responsible for cholera epidemics in Tanzania between 1993 and 2017.
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- PLoS Neglected Tropical Diseases, 2019, v. 13, n. 12, p. N.PAG, doi. 10.1371/journal.pntd.0007934
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- Article
Predicted sub-populations in a marine shrimp proteome as revealed by combined EST and cDNA data from multiple Penaeus species.
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- BMC Research Notes, 2010, v. 3, p. 295, doi. 10.1186/1756-0500-3-295
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- Article
INCX4 plasmid harbours mcr-1.1-mediating colistin resistance in the emerging pESI-positive, ESBL- producing, multidrug resistant Salmonella infantis clone isolated in Italy from broilers and broiler meat (2016-2017).
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- 2018
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- Publication type:
- Abstract
High diversity and spread of mcr transferable genes encoding colistin resistance among multidrug-resistant isolates from primary productions in Italy.
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- International Journal Of Health Animal Science & Food Safety, 2018, v. 5, p. 58
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- Article
Host Resistance, Genomics and Population Dynamics in a Salmonella Enteritidis and Phage System.
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- Viruses (1999-4915), 2019, v. 11, n. 2, p. 188, doi. 10.3390/v11020188
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- Article
New Brucella variant isolated from Croatian cattle.
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- BMC Veterinary Research, 2021, v. 17, n. 1, p. 1, doi. 10.1186/s12917-021-02833-w
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- Article
The invasome of Salmonella Dublin as revealed by whole genome sequencing.
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- 2017
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- Publication type:
- journal article
Genomic evolution of antimicrobial resistance in Escherichia coli.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93970-7
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- Publication type:
- Article
Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-80990-6
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- Publication type:
- Article
Corrigendum: Colistin Resistance Mediated by mcr-1 in ESBL-Producing, Multidrug Resistant Salmonella Infantis in Broiler Chicken Industry, Italy (2016–2017).
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02395
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- Publication type:
- Article
Colistin Resistance Mediated by mcr-1 in ESBL-Producing, Multidrug Resistant Salmonella Infantis in Broiler Chicken Industry, Italy (2016–2017).
- Published in:
- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01880
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- Publication type:
- Article
Molecular Epidemiology of mcr-Encoded Colistin Resistance in Enterobacteriaceae From Food-Producing Animals in Italy Revealed Through the EU Harmonized Antimicrobial Resistance Monitoring.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01217
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- Publication type:
- Article
Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02411
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- Publication type:
- Article
An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02351
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- Publication type:
- Article
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
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- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169324
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- Publication type:
- Article
Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections.
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- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0156212
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- Publication type:
- Article
Emergence of a Clonal Lineage of Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler Meat to Humans in Italy between 2011 and 2014.
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- PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0144802
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- Publication type:
- Article
Molecular Characteristics and Zoonotic Potential of Salmonella Weltevreden From Cultured Shrimp and Tilapia in Vietnam and China.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.01985
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- Publication type:
- Article
One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods.
- Published in:
- PLoS ONE, 2022, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0261999
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- Publication type:
- Article
Danish Whole-Genome-Sequenced Candida albicans and Candida glabrata Samples Fit into Globally Prevalent Clades.
- Published in:
- Journal of Fungi, 2021, v. 7, n. 11, p. 1, doi. 10.3390/jof7110962
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- Publication type:
- Article
snpTree - a web-server to identify and construct SNP trees from whole genome sequence data.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 7, p. 1, doi. 10.1186/1471-2164-13-S7-S6
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- Publication type:
- Article
Azithromycin resistance in Escherichia coli and Salmonella from food-producing animals and meat in Europe.
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- Journal of Antimicrobial Chemotherapy (JAC), 2024, v. 79, n. 7, p. 1657, doi. 10.1093/jac/dkae161
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- Publication type:
- Article
Co-localization of carbapenem (blaOXA-162) and colistin (mcr-1) resistance genes on a transferable IncHI2 plasmid in Escherichia coli of chicken origin.
- Published in:
- 2021
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- Publication type:
- Letter
Erratum Erratum to: Salmonella enterica serovar Typhi H58 clone has been endemic in Zimbabwe from 2012 to 2019.
- Published in:
- 2021
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- Publication type:
- journal article
Salmonella enterica serovar Typhi H58 clone has been endemic in Zimbabwe from 2012 to 2019.
- Published in:
- 2021
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- Publication type:
- journal article
Prevalence and genomic analysis of ESBL-producing Escherichia coli in retail raw meats in Singapore.
- Published in:
- 2021
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- Publication type:
- journal article
IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin.
- Published in:
- 2019
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- Publication type:
- journal article