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The miR-15a-miR-16-1 locus is homozygously deleted in a subset of prostate cancers.
- Published in:
- Genes, Chromosomes & Cancer, 2011, v. 50, n. 7, p. 499, doi. 10.1002/gcc.20873
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- Publication type:
- Article
Early DNA methylation changes in children developing beta cell autoimmunity at a young age.
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- Diabetologia, 2022, v. 65, n. 5, p. 844, doi. 10.1007/s00125-022-05657-x
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- Publication type:
- Article
Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies.
- Published in:
- BMC Molecular & Cell Biology, 2019, p. 1
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- Publication type:
- Article
Systematic Analysis of Disease-Related Regulatory Mutation Classes Reveals Distinct Effects on Transcription Factor Binding.
- Published in:
- In Silico Biology, 2009, v. 9, n. 4, p. 209, doi. 10.3233/ISB-2009-0398
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- Publication type:
- Article
Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells.
- Published in:
- BioData Mining, 2014, v. 7, n. 1, p. 15, doi. 10.1186/s13040-014-0032-2
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- Publication type:
- Article
Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data.
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- BMC Systems Biology, 2015, v. 9, p. 1, doi. 10.1186/s12918-015-0223-6
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- Publication type:
- Article
Probabilistic modeling methods for cell-free DNA methylation based cancer classification.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04651-9
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- Publication type:
- Article
LuxRep: a technical replicate-aware method for bisulfite sequencing data analysis.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-021-04546-1
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- Article
A Data Integration Framework for Prediction of Transcription Factor Targets.
- Published in:
- Annals of the New York Academy of Sciences, 2009, v. 1158, p. 205, doi. 10.1111/j.1749-6632.2008.03758.x
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- Publication type:
- Article
An importance sampling approach for reliable and efficient inference in Bayesian ordinary differential equation models.
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- Stat, 2023, v. 12, n. 1, p. 1, doi. 10.1002/sta4.614
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- Publication type:
- Article
Systematic annotation of celiac disease loci refines pathological pathways and suggests a genetic explanation for increased interferon-gamma levels.
- Published in:
- Human Molecular Genetics, 2015, v. 24, n. 2, p. 397, doi. 10.1093/hmg/ddu453
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- Publication type:
- Article
Cancer-associated ASXL1 mutations may act as gain-of-function mutations of the ASXL1-BAP1 complex.
- Published in:
- Nature Communications, 2015, v. 6, n. 6, p. 7307, doi. 10.1038/ncomms8307
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- Publication type:
- Article
Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00853-7
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- Publication type:
- Article
The landscape of copy number variations in Finnish families with autism spectrum disorders.
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- Autism Research: Official Journal of the International Society for Autism Research, 2016, v. 9, n. 1, p. 9, doi. 10.1002/aur.1502
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- Publication type:
- Article
The genome-wide landscape of copy number variations in the MUSGEN study provides evidence for a founder effect in the isolated Finnish population.
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- European Journal of Human Genetics, 2013, v. 21, n. 12, p. 1411, doi. 10.1038/ejhg.2013.60
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- Publication type:
- Article
Early Detection of Peripheral Blood Cell Signature in Children Developing β-Cell Autoimmunity at a Young Age.
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- 2019
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- Publication type:
- journal article
Serum Proteomes Distinguish Children Developing Type 1 Diabetes in a Cohort With HLA-Conferred Susceptibility.
- Published in:
- Diabetes, 2015, v. 64, n. 6, p. 2265, doi. 10.2337/db14-0983
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- Publication type:
- Article
Innate Immune Activity Is Detected Prior to Seroconversion in Children With HLA-Conferred Type 1 Diabetes Susceptibility.
- Published in:
- Diabetes, 2014, v. 63, n. 7, p. 2402, doi. 10.2337/db13-1775
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- Publication type:
- Article
MixChIP: a probabilistic method for cell type specific protein-DNA binding analysis.
- Published in:
- BMC Bioinformatics, 2015, p. 1, doi. 10.1186/s12859-015-0834-3
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- Publication type:
- Article
Evaluating a linear k-mer model for protein-DNA interactions using high-throughput SELEX data.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 10, p. 1, doi. 10.1186/1471-2105-14-S10-S2
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- Publication type:
- Article
Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells.
- Published in:
- PLoS Biology, 2018, v. 16, n. 6, p. 1, doi. 10.1371/journal.pbio.2004194
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- Publication type:
- Article
Selected proceedings of Machine Learning in Systems Biology: MLSB 2016.
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- BMC Bioinformatics, 2016, v. 17, p. 51, doi. 10.1186/s12859-016-1305-1
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- Publication type:
- Article
Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods.
- Published in:
- Applied Microbiology & Biotechnology, 2020, v. 104, n. 24, p. 10515, doi. 10.1007/s00253-020-10960-x
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- Publication type:
- Article
An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09785-8
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- Publication type:
- Article
Robust detection of periodic time series measured from biological systems.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 117, doi. 10.1186/1471-2105-6-117
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- Publication type:
- Article
In silico microdissection of microarray data from heterogeneous cell populations.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 1, doi. 10.1186/1471-2105-6-54
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- Publication type:
- Article
EPIC-TRACE: predicting TCR binding to unseen epitopes using attention and contextualized embeddings.
- Published in:
- Bioinformatics, 2023, v. 39, n. 12, p. 1, doi. 10.1093/bioinformatics/btad743
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- Publication type:
- Article
TSignal: a transformer model for signal peptide prediction.
- Published in:
- Bioinformatics, 2023, v. 39, p. i347, doi. 10.1093/bioinformatics/btad228
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- Publication type:
- Article
ChromDMM: a Dirichlet-multinomial mixture model for clustering heterogeneous epigenetic data.
- Published in:
- Bioinformatics, 2022, v. 38, n. 16, p. 3863, doi. 10.1093/bioinformatics/btac444
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- Publication type:
- Article
lgpr: an interpretable non-parametric method for inferring covariate effects from longitudinal data.
- Published in:
- Bioinformatics, 2021, v. 37, n. 13, p. 1860, doi. 10.1093/bioinformatics/btab021
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- Publication type:
- Article
LuxUS: DNA methylation analysis using generalized linear mixed model with spatial correlation.
- Published in:
- Bioinformatics, 2020, v. 36, n. 17, p. 4535, doi. 10.1093/bioinformatics/btaa539
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- Publication type:
- Article
Bayesian metabolic flux analysis reveals intracellular flux couplings.
- Published in:
- Bioinformatics, 2019, v. 35, n. 14, p. i548, doi. 10.1093/bioinformatics/btz315
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- Publication type:
- Article
snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions.
- Published in:
- Bioinformatics, 2018, v. 34, n. 23, p. 4112, doi. 10.1093/bioinformatics/bty460
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- Publication type:
- Article
mGPfusion: predicting protein stability changes with Gaussian process kernel learning and data fusion.
- Published in:
- Bioinformatics, 2018, v. 34, n. 13, p. i274, doi. 10.1093/bioinformatics/bty238
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- Publication type:
- Article
Continuous Hypoxic Culturing of Human Embryonic Stem Cells Enhances SSEA-3 and MYC Levels.
- Published in:
- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078847
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- Publication type:
- Article
Genome-Wide Copy Number Variation Analysis in Extended Families and Unrelated Individuals Characterized for Musical Aptitude and Creativity in Music.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056356
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- Publication type:
- Article
A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays.
- Published in:
- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020059
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- Publication type:
- Article
Reconstruction and Validation of RefRec: A Global Model for the Yeast Molecular Interaction Network.
- Published in:
- PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010662
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- Publication type:
- Article
Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources.
- Published in:
- PLoS ONE, 2008, v. 3, n. 3, p. 1, doi. 10.1371/journal.pone.0001820
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- Publication type:
- Article
RNA-Binding Protein L1TD1 Interacts with LIN28 via RNA and is Required for Human Embryonic Stem Cell Self-Renewal and Cancer Cell Proliferation.
- Published in:
- Stem Cells, 2012, v. 30, n. 3, p. 452, doi. 10.1002/stem.1013
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- Publication type:
- Article
Chemical castration and anti-androgens induce differential gene expression in prostate cancer.
- Published in:
- Journal of Pathology, 2012, v. 227, n. 3, p. 336, doi. 10.1002/path.4027
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- Publication type:
- Article
Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX.
- Published in:
- Nature, 2013, v. 497, n. 7447, p. 122, doi. 10.1038/nature12052
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- Publication type:
- Article
Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor-independent TCR signaling hub.
- Published in:
- Nature Immunology, 2014, v. 15, n. 4, p. 384, doi. 10.1038/ni.2843
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- Publication type:
- Article
Epigenetic Silencing of the Key Antioxidant Enzyme Catalase in Karyotypically Abnormal Human Pluripotent Stem Cells.
- Published in:
- Scientific Reports, 2016, p. 22190, doi. 10.1038/srep22190
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- Publication type:
- Article
Evolution and modulation of antigen-specific T cell responses in melanoma patients.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33720-z
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- Publication type:
- Article
Single-cell characterization of leukemic and non-leukemic immune repertoires in CD8<sup>+</sup> T-cell large granular lymphocytic leukemia.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29173-z
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- Publication type:
- Article
Peripheral blood DNA methylation differences in twin pairs discordant for Alzheimer's disease.
- Published in:
- Clinical Epigenetics, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13148-019-0729-7
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- Publication type:
- Article
Tubulin- and actin-associating GIMAP4 is required for IFN-γ secretion during Th cell differentiation.
- Published in:
- Immunology & Cell Biology, 2015, v. 93, n. 2, p. 158, doi. 10.1038/icb.2014.86
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- Publication type:
- Article
Identification of global regulators of T-helper cell lineage specification.
- Published in:
- Genome Medicine, 2015, v. 7, p. 1, doi. 10.1186/s13073-015-0237-0
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- Publication type:
- Article
Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity.
- Published in:
- Genome Medicine, 2014, v. 6, n. 10, p. 109, doi. 10.1186/s13073-014-0088-0
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- Publication type:
- Article