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Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing.
Published in:
2019
By:
- Korthauer, Keegan;
- Chakraborty, Sutirtha;
- Benjamini, Yuval;
- Irizarry, Rafael A
Publication type:
journal article
Androgen receptor and MYC equilibration centralizes on developmental super-enhancer.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27077-y
By:
- Guo, Haiyang;
- Wu, Yiming;
- Nouri, Mannan;
- Spisak, Sandor;
- Russo, Joshua W.;
- Sowalsky, Adam G.;
- Pomerantz, Mark M.;
- Wei, Zhao;
- Korthauer, Keegan;
- Seo, Ji-Heui;
- Wang, Liyang;
- Arai, Seiji;
- Freedman, Matthew L.;
- He, Housheng Hansen;
- Chen, Shaoyong;
- Balk, Steven P.
Publication type:
Article
High-throughput identification of RNA nuclear enrichment sequences.
Published in:
EMBO Journal, 2018, v. 37, n. 6, p. 1, doi. 10.15252/embj.201798452
By:
- Shukla, Chinmay J;
- McCorkindale, Alexandra L;
- Gerhardinger, Chiara;
- Korthauer, Keegan D;
- Cabili, Moran N;
- Shechner, David M;
- Irizarry, Rafael A;
- Maass, Philipp G;
- Rinn, John L
Publication type:
Article
Differential substrate use in EGF‐ and oncogenic KRAS‐stimulated human mammary epithelial cells.
Published in:
FEBS Journal, 2021, v. 288, n. 19, p. 5629, doi. 10.1111/febs.15858
By:
- Keibler, Mark A.;
- Dong, Wentao;
- Korthauer, Keegan D.;
- Hosios, Aaron M.;
- Moon, Sun Jin;
- Sullivan, Lucas B.;
- Liu, Nian;
- Abbott, Keene L.;
- Arevalo, Orlando D.;
- Ho, Kailing;
- Lee, Jennifer;
- Phanse, Aasavari S.;
- Kelleher, Joanne K.;
- Iliopoulos, Othon;
- Coloff, Jonathan L.;
- Vander Heiden, Matthew G.;
- Stephanopoulos, Gregory
Publication type:
Article
Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer.
Published in:
Carcinogenesis, 2016, v. 37, n. 2, p. 188, doi. 10.1093/carcin/bgv171
By:
- Bodelon, Clara;
- Vinokurova, Svetlana;
- Sampson, Joshua N.;
- den Boon, Johan A.;
- Walker, Joan L.;
- Horswill, Mark A.;
- Korthauer, Keegan;
- Schiffman, Mark;
- Sherman, Mark E.;
- Zuna, Rosemary E.;
- Mitchell, Jason;
- Xijun Zhang;
- Boland, Joseph F.;
- Chaturvedi, Anil K.;
- Dunn, S. Terence;
- Newton, Michael A.;
- Ahlquist, Paul;
- Wang, Sophia S.;
- Wentzensen, Nicolas
Publication type:
Article
Conservation and divergence of canonical and non-canonical imprinting in murids.
Published in:
Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02869-1
By:
- Richard Albert, Julien;
- Kobayashi, Toshihiro;
- Inoue, Azusa;
- Monteagudo-Sánchez, Ana;
- Kumamoto, Soichiro;
- Takashima, Tomoya;
- Miura, Asuka;
- Oikawa, Mami;
- Miura, Fumihito;
- Takada, Shuji;
- Hirabayashi, Masumi;
- Korthauer, Keegan;
- Kurimoto, Kazuki;
- Greenberg, Maxim V. C.;
- Lorincz, Matthew;
- Kobayashi, Hisato
Publication type:
Article
A statistical approach for identifying differential distributions in single-cell RNA-seq experiments.
Published in:
Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1077-y
By:
- Korthauer, Keegan D.;
- Li-Fang Chu;
- Newton, Michael A.;
- Yuan Li;
- Thomson, James;
- Stewart, Ron;
- Kendziorski, Christina
Publication type:
Article
A practical guide to methods controlling false discoveries in computational biology.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1716-1
By:
- Korthauer, Keegan;
- Kimes, Patrick K.;
- Duvallet, Claire;
- Reyes, Alejandro;
- Subramanian, Ayshwarya;
- Teng, Mingxiang;
- Shukla, Chinmay;
- Alm, Eric J.;
- Hicks, Stephanie C.
Publication type:
Article
Methods for Collapsing Multiple Rare Variants in Whole-Genome Sequence Data.
Published in:
Genetic Epidemiology, 2014, v. 38, p. S13, doi. 10.1002/gepi.21820
By:
- Sung, Yun Ju;
- Korthauer, Keegan D.;
- Swartz, Michael D.;
- Engelman, Corinne D.
Publication type:
Article
MADGiC: a model-based approach for identifying driver genes in cancer.
Published in:
2015
By:
- Korthauer, Keegan D.;
- Kendziorski, Christina
Publication type:
Case Study

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