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Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea.
Published in:
Plant Biotechnology Journal, 2022, v. 20, n. 9, p. 1701, doi. 10.1111/pbi.13840
By:
- Barmukh, Rutwik;
- Roorkiwal, Manish;
- Garg, Vanika;
- Khan, Aamir W.;
- German, Liam;
- Jaganathan, Deepa;
- Chitikineni, Annapurna;
- Kholova, Jana;
- Kudapa, Himabindu;
- Sivasakthi, Kaliamoorthy;
- Samineni, Srinivasan;
- Kale, Sandip M.;
- Gaur, Pooran M.;
- Sagurthi, Someswar Rao;
- Benitez‐Alfonso, Yoselin;
- Varshney, Rajeev K.
Publication type:
Article
Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea (Cajanus cajan L.).
Published in:
Plant Biotechnology Journal, 2020, v. 18, n. 12, p. 2482, doi. 10.1111/pbi.13422
By:
- Sinha, Pallavi;
- Singh, Vikas K.;
- Saxena, Rachit K.;
- Khan, Aamir W.;
- Abbai, Ragavendran;
- Chitikineni, Annapurna;
- Desai, Aarthi;
- Molla, Johiruddin;
- Upadhyaya, Hari D.;
- Kumar, Arvind;
- Varshney, Rajeev K.
Publication type:
Article
Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications.
Published in:
Plant Biotechnology Journal, 2020, v. 18, n. 11, p. 2187, doi. 10.1111/pbi.13374
By:
- Sinha, Pallavi;
- Bajaj, Prasad;
- Pazhamala, Lekha T.;
- Nayak, Spurthi N.;
- Pandey, Manish K.;
- Chitikineni, Annapurna;
- Huai, Dongxin;
- Khan, Aamir W.;
- Desai, Aarthi;
- Jiang, Huifang;
- Zhuang, Weijian;
- Guo, Baozhu;
- Liao, Boshou;
- Varshney, Rajeev K.
Publication type:
Article
Trait associations in the pangenome of pigeon pea (Cajanus cajan).
Published in:
Plant Biotechnology Journal, 2020, v. 18, n. 9, p. 1946, doi. 10.1111/pbi.13354
By:
- Zhao, Junliang;
- Bayer, Philipp E.;
- Ruperao, Pradeep;
- Saxena, Rachit K.;
- Khan, Aamir W.;
- Golicz, Agnieszka A.;
- Nguyen, Henry T.;
- Batley, Jacqueline;
- Edwards, David;
- Varshney, Rajeev K.
Publication type:
Article
Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea.
Published in:
Plant Biotechnology Journal, 2020, v. 18, n. 8, p. 1697, doi. 10.1111/pbi.13333
By:
- Sinha, Pallavi;
- Singh, Vikas K.;
- Saxena, Rachit K.;
- Kale, Sandip M.;
- Li, Yuqi;
- Garg, Vanika;
- Meifang, Tang;
- Khan, Aamir W.;
- Kim, Kyung Do;
- Chitikineni, Annapurna;
- Saxena, K. B.;
- Sameer Kumar, C. V.;
- Liu, Xin;
- Xu, Xun;
- Jackson, Scott;
- Powell, Wayne;
- Nevo, Eviatar;
- Searle, Iain R.;
- Lodha, Mukesh;
- Varshney, Rajeev K.
Publication type:
Article
Whole‐genome resequencing‐based QTL‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut.
Published in:
Plant Biotechnology Journal, 2020, v. 18, n. 4, p. 992, doi. 10.1111/pbi.13266
By:
- Kumar, Rakesh;
- Janila, Pasupuleti;
- Vishwakarma, Manish K.;
- Khan, Aamir W.;
- Manohar, Surendra S.;
- Gangurde, Sunil S.;
- Variath, Murali T.;
- Shasidhar, Yaduru;
- Pandey, Manish K.;
- Varshney, Rajeev K.
Publication type:
Article
Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut (Arachis hypogaea L.).
Published in:
Plant Biotechnology Journal, 2019, v. 17, n. 12, p. 2356, doi. 10.1111/pbi.13153
By:
- Luo, Huaiyong;
- Pandey, Manish K.;
- Khan, Aamir W.;
- Wu, Bei;
- Guo, Jianbin;
- Ren, Xiaoping;
- Zhou, Xiaojing;
- Chen, Yuning;
- Chen, Weigang;
- Huang, Li;
- Liu, Nian;
- Lei, Yong;
- Liao, Boshou;
- Varshney, Rajeev K.;
- Jiang, Huifang
Publication type:
Article
Discovery of genomic regions and candidate genes controlling shelling percentage using QTL‐seq approach in cultivated peanut (Arachis hypogaea L.).
Published in:
Plant Biotechnology Journal, 2019, v. 17, n. 7, p. 1248, doi. 10.1111/pbi.13050
By:
- Luo, Huaiyong;
- Pandey, Manish K.;
- Khan, Aamir W.;
- Guo, Jianbin;
- Wu, Bei;
- Cai, Yan;
- Huang, Li;
- Zhou, Xiaojing;
- Chen, Yuning;
- Chen, Weigang;
- Liu, Nian;
- Lei, Yong;
- Liao, Boshou;
- Varshney, Rajeev K.;
- Jiang, Huifang
Publication type:
Article
Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea.
Published in:
Plant Biotechnology Journal, 2019, v. 17, n. 5, p. 914, doi. 10.1111/pbi.13026
By:
- Garg, Vanika;
- Khan, Aamir W.;
- Kudapa, Himabindu;
- Kale, Sandip M.;
- Chitikineni, Annapurna;
- Qiwei, Sun;
- Sharma, Mamta;
- Li, Chuanying;
- Zhang, Baohong;
- Xin, Liu;
- Kishor, P.B. Kavi;
- Varshney, Rajeev K.
Publication type:
Article
QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut ( Arachis hypogaea L.).
Published in:
Plant Biotechnology Journal, 2017, v. 15, n. 8, p. 927, doi. 10.1111/pbi.12686
By:
- Pandey, Manish K.;
- Khan, Aamir W.;
- Singh, Vikas K.;
- Vishwakarma, Manish K.;
- Shasidhar, Yaduru;
- Kumar, Vinay;
- Garg, Vanika;
- Bhat, Ramesh S.;
- Chitikineni, Annapurna;
- Janila, Pasupuleti;
- Guo, Baozhu;
- Varshney, Rajeev K.
Publication type:
Article
Indel-seq: a fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea ( Cajanus cajan).
Published in:
Plant Biotechnology Journal, 2017, v. 15, n. 7, p. 906, doi. 10.1111/pbi.12685
By:
- Singh, Vikas K.;
- Khan, Aamir W.;
- Saxena, Rachit K.;
- Sinha, Pallavi;
- Kale, Sandip M.;
- Parupalli, Swathi;
- Kumar, Vinay;
- Chitikineni, Annapurna;
- Vechalapu, Suryanarayana;
- Sameer Kumar, Chanda Venkata;
- Sharma, Mamta;
- Ghanta, Anuradha;
- Yamini, Kalinati Narasimhan;
- Muniswamy, Sonnappa;
- Varshney, Rajeev K.
Publication type:
Article
QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea.
Published in:
Plant Biotechnology Journal, 2016, v. 14, n. 11, p. 2110, doi. 10.1111/pbi.12567
By:
- Singh, Vikas K.;
- Khan, Aamir W.;
- Jaganathan, Deepa;
- Thudi, Mahendar;
- Roorkiwal, Manish;
- Takagi, Hiroki;
- Garg, Vanika;
- Kumar, Vinay;
- Chitikineni, Annapurna;
- Gaur, Pooran M.;
- Sutton, Tim;
- Terauchi, Ryohei;
- Varshney, Rajeev K.
Publication type:
Article
First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations.
Published in:
Plant Biotechnology Journal, 2016, v. 14, n. 8, p. 1673, doi. 10.1111/pbi.12528
By:
- Kumar, Vinay;
- Khan, Aamir W.;
- Saxena, Rachit K.;
- Garg, Vanika;
- Varshney, Rajeev K.
Publication type:
Article
Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea.
Published in:
Plant Biotechnology Journal, 2016, v. 14, n. 7, p. 1563, doi. 10.1111/pbi.12520
By:
- Agarwal, Gaurav;
- Garg, Vanika;
- Kudapa, Himabindu;
- Doddamani, Dadakhalandar;
- Pazhamala, Lekha T.;
- Khan, Aamir W.;
- Thudi, Mahendar;
- Lee, Suk‐Ha;
- Varshney, Rajeev K.
Publication type:
Article
Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea ( Cajanus cajan).
Published in:
Plant Biotechnology Journal, 2016, v. 14, n. 5, p. 1183, doi. 10.1111/pbi.12470
By:
- Singh, Vikas K.;
- Khan, Aamir W.;
- Saxena, Rachit K.;
- Kumar, Vinay;
- Kale, Sandip M.;
- Sinha, Pallavi;
- Chitikineni, Annapurna;
- Pazhamala, Lekha T.;
- Garg, Vanika;
- Sharma, Mamta;
- Sameer Kumar, Chanda Venkata;
- Parupalli, Swathi;
- Vechalapu, Suryanarayana;
- Patil, Suyash;
- Muniswamy, Sonnappa;
- Ghanta, Anuradha;
- Yamini, Kalinati Narasimhan;
- Dharmaraj, Pallavi Subbanna;
- Varshney, Rajeev K.
Publication type:
Article
Molecular Mapping of QTLs for Heat Tolerance in Chickpea.
Published in:
International Journal of Molecular Sciences, 2018, v. 19, n. 8, p. 2166, doi. 10.3390/ijms19082166
By:
- Paul, Pronob J.;
- Samineni, Srinivasan;
- Thudi, Mahendar;
- Sajja, Sobhan B.;
- Rathore, Abhishek;
- Das, Roma R.;
- Khan, Aamir W.;
- Chaturvedi, Sushil K.;
- Lavanya, Gera Roopa;
- Varshney, Rajeev. K.;
- Gaur, Pooran M.
Publication type:
Article
A draft genome sequence of the pulse crop chickpea ( Cicer arietinum L.).
Published in:
Plant Journal, 2013, v. 74, n. 5, p. 715, doi. 10.1111/tpj.12173
By:
- Jain, Mukesh;
- Misra, Gopal;
- Patel, Ravi K.;
- Priya, Pushp;
- Jhanwar, Shalu;
- Khan, Aamir W.;
- Shah, Niraj;
- Singh, Vikas K.;
- Garg, Rohini;
- Jeena, Ganga;
- Yadav, Manju;
- Kant, Chandra;
- Sharma, Priyanka;
- Yadav, Gitanjali;
- Bhatia, Sabhyata;
- Tyagi, Akhilesh K.;
- Chattopadhyay, Debasis
Publication type:
Article
Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea.
Published in:
Plant Genome, 2024, v. 17, n. 1, p. 1, doi. 10.1002/tpg2.20333
By:
- Thudi, Mahendar;
- Samineni, Srinivasan;
- Li, Wenhao;
- Boer, Martin P.;
- Roorkiwal, Manish;
- Yang, Zuoquan;
- Ladejobi, Funmi;
- Zheng, Chaozhi;
- Chitikineni, Annapurna;
- Nayak, Sourav;
- He, Zhang;
- Valluri, Vinod;
- Bajaj, Prasad;
- Khan, Aamir W.;
- Gaur, Pooran M.;
- van Eeuwijk, Fred;
- Mott, Richard;
- Xin, Liu;
- Varshney, Rajeev K.
Publication type:
Article
Near‐gapless genome assemblies of Williams 82 and Lee cultivars for accelerating global soybean research.
Published in:
Plant Genome, 2023, v. 16, n. 4, p. 1, doi. 10.1002/tpg2.20382
By:
- Garg, Vanika;
- Khan, Aamir W.;
- Fengler, Kevin;
- Llaca, Victor;
- Yuan, Yuxuan;
- Vuong, Tri D.;
- Harris, Charlotte;
- Chan, Ting‐Fung;
- Lam, Hon Ming;
- Varshney, Rajeev K.;
- Nguyen, Henry T.
Publication type:
Article
Whole‐genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut.
Published in:
Plant Genome, 2023, v. 16, n. 4, p. 1, doi. 10.1002/tpg2.20265
By:
- Gangurde, Sunil S.;
- Khan, Aamir W.;
- Janila, Pasupuleti;
- Variath, Murali T.;
- Manohar, Surendra S.;
- Singam, Prashant;
- Chitikineni, Annapurna;
- Varshney, Rajeev K.;
- Pandey, Manish K.
Publication type:
Article
Characterization of heterosis and genomic prediction‐based establishment of heterotic patterns for developing better hybrids in pigeonpea.
Published in:
Plant Genome, 2021, v. 14, n. 3, p. 1, doi. 10.1002/tpg2.20125
By:
- Saxena, Rachit K.;
- Jiang, Yong;
- Khan, Aamir W;
- Zhao, Yusheng;
- Kumar Singh, Vikas;
- Bohra, Abhishek;
- Sonappa, Muniswamy;
- Rathore, Abhishek;
- Kumar, C.V. Sameer;
- Saxena, Kulbhushan;
- Reif, Jochen;
- Varshney, Rajeev K.
Publication type:
Article
NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data.
Published in:
PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0139868
By:
- Katta, Mohan A. V. S. K.;
- Khan, Aamir W.;
- Doddamani, Dadakhalandar;
- Thudi, Mahendar;
- Varshney, Rajeev K.
Publication type:
Article
Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World.
Published in:
PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105228
By:
- Pandey, Manish K.;
- Upadhyaya, Hari D.;
- Rathore, Abhishek;
- Vadez, Vincent;
- Sheshshayee, M. S.;
- Sriswathi, Manda;
- Govil, Mansee;
- Kumar, Ashish;
- Gowda, M. V. C.;
- Sharma, Shivali;
- Hamidou, Falalou;
- Kumar, V. Anil;
- Khera, Pawan;
- Bhat, Ramesh S.;
- Khan, Aamir W.;
- Singh, Sube;
- Li, Hongjie;
- Monyo, Emmanuel;
- Nadaf, H. L.;
- Mukri, Ganapati
Publication type:
Article
Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.).
Published in:
BMC Plant Biology, 2016, v. 16, p. 53, doi. 10.1186/s12870-015-0690-3
By:
- Thudi, Mahendar;
- Khan, Aamir W.;
- Kumar, Vinay;
- Gaur, Pooran M.;
- Katta, Krishnamohan;
- Garg, Vanika;
- Roorkiwal, Manish;
- Samineni, Srinivasan;
- Varshney, Rajeev K.
Publication type:
Article
MutMap Approach Enables Rapid Identification of Candidate Genes and Development of Markers Associated With Early Flowering and Enhanced Seed Size in Chickpea (Cicer arietinum L.).
Published in:
Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.688694
By:
- Manchikatla, Praveen Kumar;
- Kalavikatte, Danamma;
- Mallikarjuna, Bingi Pujari;
- Palakurthi, Ramesh;
- Khan, Aamir W.;
- Jha, Uday Chand;
- Bajaj, Prasad;
- Singam, Prashant;
- Chitikineni, Annapurna;
- Varshney, Rajeev K.;
- Thudi, Mahendar
Publication type:
Article
CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea.
Published in:
Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav078
By:
- Doddamani, Dadakhalandar;
- Khan, Aamir W.;
- Katta, Mohan A. V. S. K.;
- Agarwal, Gaurav;
- Thudi, Mahendar;
- Ruperao, Pradeep;
- Edwards, David;
- Varshney, Rajeev K.
Publication type:
Article
CicArMiSatDB: the chickpea microsatellite database.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-212
By:
- Doddamani, Dadakhalandar;
- Katta, Mohan A. V. S. K.;
- Khan, Aamir W.;
- Agarwal, Gaurav;
- Shah, Trushar M.;
- Varshney, Rajeev K.
Publication type:
Article
Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq.
Published in:
Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.981295
By:
- Shweta Singh;
- Sharma, Rajan;
- Nepolean, Thirunavukkarasu;
- Nayak, Spurthi N.;
- Pushpavathi, Bheemavarapu;
- Khan, Aamir W.;
- Srivastava, Rakesh K.;
- Varshney, Rajeev K.
Publication type:
Article
A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea.
Published in:
Theoretical & Applied Genetics, 2021, v. 134, n. 1, p. 367, doi. 10.1007/s00122-020-03702-0
By:
- Saxena, Rachit K.;
- Hake, Anil;
- Bohra, Abhishek;
- Khan, Aamir W.;
- Hingane, Anupama;
- Sultana, Rafat;
- Singh, Indra Prakash;
- Naik, S. J. Satheesh;
- Varshney, Rajeev K.
Publication type:
Article
Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.).
Published in:
Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01140
By:
- Mallikarjuna, Bingi P.;
- Samineni, Srinivasan;
- Thudi, Mahendar;
- Sajja, Sobhan B.;
- Khan, Aamir W.;
- Patil, Ayyanagowda;
- Viswanatha, Kannalli P.;
- Varshney, Rajeev K.;
- Gaur, Pooran M.
Publication type:
Article
Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops.
Published in:
Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00488
By:
- Garg, Vanika;
- Agarwa, Gaurav;
- Pazhamala, Lekha T.;
- Nayak, Spurthi N.;
- Kudapa, Himabindu;
- Khan, Aamir W.;
- Doddamani, Dadakhalandar;
- Sharma, Mamta;
- Kishor, P. B. Kavi;
- Varshney, Rajeev K.
Publication type:
Article
High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut.
Published in:
BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-04987-9
By:
- Pandey, Manish K.;
- Gangurde, Sunil S.;
- Shasidhar, Yaduru;
- Sharma, Vinay;
- Kale, Sandip M.;
- Khan, Aamir W.;
- Shah, Priya;
- Joshi, Pushpesh;
- Bhat, Ramesh S.;
- Janila, Pasupuleti;
- Bera, Sandip K.;
- Varshney, Rajeev K.
Publication type:
Article
Correction: High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut.
Published in:
2024
By:
- Pandey, Manish K.;
- Gangurde, Sunil S.;
- Shasidhar, Yaduru;
- Sharma, Vinay;
- Kale, Sandip M.;
- Khan, Aamir W.;
- Shah, Priya;
- Joshi, Pushpesh;
- Bhat, Ramesh S.;
- Janila, Pasupuleti;
- Bera, Sandip K.;
- Varshney, Rajeev K.
Publication type:
Correction Notice
High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut.
Published in:
BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-04987-9
By:
- Pandey, Manish K.;
- Gangurde, Sunil S.;
- Shasidhar, Yaduru;
- Sharma, Vinay;
- Kale, Sandip M.;
- Khan, Aamir W.;
- Shah, Priya;
- Joshi, Pushpesh;
- Bhat, Ramesh S.;
- Janila, Pasupuleti;
- Bera, Sandip K.;
- Varshney, Rajeev K.
Publication type:
Article
High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut.
Published in:
BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-04987-9
By:
- Pandey, Manish K.;
- Gangurde, Sunil S.;
- Shasidhar, Yaduru;
- Sharma, Vinay;
- Kale, Sandip M.;
- Khan, Aamir W.;
- Shah, Priya;
- Joshi, Pushpesh;
- Bhat, Ramesh S.;
- Janila, Pasupuleti;
- Bera, Sandip K.;
- Varshney, Rajeev K.
Publication type:
Article
Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.).
Published in:
Frontiers in Plant Science, 2016, v. 6, p. 1, doi. 10.3389/fpls.2015.01065
By:
- Sinha, Pallavi;
- Pazhamala, Lekha T.;
- Singh, Vikas K.;
- Saxena, Rachit K.;
- Krishnamurthy, L.;
- Azam, Sarwar;
- Khan, Aamir W.;
- Varshney, Rajeev K.;
- Lata, Charu;
- Ping Wan
Publication type:
Article

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