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Genomic Variation in Natural Populations of Drosophila melanogaster.
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- Genetics, 2012, v. 192, n. 2, p. 533, doi. 10.1534/genetics.112.142018
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- Article
Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster.
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- Genetics, 2011, v. 187, n. 1, p. 245, doi. 10.1534/genetics.110.123059
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Recurrent Deletion and Gene Presence/Absence Polymorphism: Telomere Dynamics Dominate Evolution at the Tip of 3L in Drosophila melanogaster and D. simulans.
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- Genetics, 2008, v. 179, n. 2, p. 1021, doi. 10.1534/genetics.107.078345
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Evidence for de Novo Evolution of Testis-Expressed Genes in the Drosophila yakuba/Drosophila erecta Clade.
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- Genetics, 2007, v. 176, n. 2, p. 1131, doi. 10.1534/genetics.106.069245
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Molecular Population Genetics of Male Accessory Gland Proteins in the Drosophila simulans Complex.
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- Genetics, 2004, v. 167, n. 2, p. 725, doi. 10.1534/genetics.103.020883
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- Article
Genomic effects of nucleotide substitutions in Drosophila simulans.
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- Genetics, 2002, v. 162, n. 4, p. 1753, doi. 10.1093/genetics/162.4.1753
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- Article
Variation resources at UC Santa Cruz.
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- Nucleic Acids Research, 2007, v. 35, p. d716, doi. 10.1093/nar/gkl953
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- Article
Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs.
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- Nature Genetics, 2004, v. 36, n. 11, p. 1207, doi. 10.1038/ng1451
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Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia.
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- PLoS Genetics, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pgen.1007341
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- Article
Correcting the Site Frequency Spectrum for Divergence- Based Ascertainment.
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- PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005152
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- Article
Discovery of Ongoing Selective Sweeps within Anopheles Mosquito Populations Using Deep Learning.
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- Molecular Biology & Evolution, 2021, v. 38, n. 3, p. 1168, doi. 10.1093/molbev/msaa259
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- Article
Predicting the Landscape of Recombination Using Deep Learning.
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- Molecular Biology & Evolution, 2020, v. 37, n. 6, p. 1790, doi. 10.1093/molbev/msaa038
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- Article
The Neutral Theory in Light of Natural Selection.
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- Molecular Biology & Evolution, 2018, v. 35, n. 6, p. 1366, doi. 10.1093/molbev/msy092
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- Article
Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome.
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- Molecular Biology & Evolution, 2017, v. 34, n. 8, p. 1863, doi. 10.1093/molbev/msx154
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- Article
Conservation and Functional Element Discovery in 20 Angiosperm Plant Genomes.
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- Molecular Biology & Evolution, 2013, v. 30, n. 7, p. 1729, doi. 10.1093/molbev/mst082
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- Article
An RNA gene expressed during cortical development evolved rapidly in humans.
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- Nature, 2006, v. 443, n. 7108, p. 167, doi. 10.1038/nature05113
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- Article
Evaluating evidence for co-geography in the Anopheles–Plasmodium host–parasite system.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 3, p. 1, doi. 10.1093/g3journal/jkae008
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- Article
Visualizing population structure with variational autoencoders.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 1, p. 1, doi. 10.1093/g3journal/jkaa036
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- Article
diploS/HIC: An Updated Approach to Classifying Selective Sweeps.
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- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 6, p. 1959, doi. 10.1534/g3.118.200262
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- Article
The Effect of Common Inversion Polymorphisms In(2L)t and In(3R)Mo on Patterns of Transcriptional Variation in Drosophila melanogaster.
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- G3: Genes | Genomes | Genetics, 2017, v. 7, n. 11, p. 3659, doi. 10.1534/g3.117.1133
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A quantitative genetic model of background selection in humans.
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- PLoS Genetics, 2024, v. 20, n. 3, p. 1, doi. 10.1371/journal.pgen.1011144
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- Article
Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain.
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- Genome Biology & Evolution, 2015, v. 7, n. 12, p. 3511, doi. 10.1093/gbe/evv228
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- Article
The Role of DNA Insertions in Phenotypic Differentiation between Humans and Other Primates.
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- Genome Biology & Evolution, 2015, v. 7, n. 4, p. 1168, doi. 10.1093/gbe/evv012
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- Article
Highly Constrained Intergenic Drosophila Ultraconserved Elements Are Candidate ncRNAs.
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- Genome Biology & Evolution, 2015, v. 7, n. 3, p. 689, doi. 10.1093/gbe/evv011
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- Article
Discovering Functional DNA Elements Using Population Genomic Information: A Proof of Concept Using Human mtDNA.
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- Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1542, doi. 10.1093/gbe/evu116
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- Article
Recurrent Adaptation in RNA Interference Genes Across the Drosophila Phylogeny.
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- Molecular Biology & Evolution, 2011, v. 28, n. 2, p. 1033, doi. 10.1093/molbev/msq284
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- Article
A Population Genetic Hidden Markov Model for Detecting Genomic Regions Under Selection.
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- Molecular Biology & Evolution, 2010, v. 27, n. 7, p. 1673, doi. 10.1093/molbev/msq053
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- Article
Comparative Genomics of Centrality and Essentiality in Three Eukaryotic Protein-Interaction Networks.
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- Molecular Biology & Evolution, 2005, v. 22, n. 4, p. 803, doi. 10.1093/molbev/msi072
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- Article
Patterns of Polymorphism and Divergence from Noncoding Sequences of Drosophila melanogaster and D. simulans: Evidence for Nonequilibrium Processes.
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- Molecular Biology & Evolution, 2005, v. 22, n. 1, p. 51, doi. 10.1093/molbev/msh269
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- Article
Evolutionary genomics: Codon bias and selection on single genomes.
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- Nature, 2005, v. 433, n. 7023, p. E5, doi. 10.1038/nature03221
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- Article
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans.
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- PLoS Biology, 2007, v. 5, n. 11, p. e310, doi. 10.1371/journal.pbio.0050310
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- Article
Shared evolutionary processes shape landscapes of genomic variation in the great apes.
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- Genetics, 2024, v. 226, n. 4, p. 1, doi. 10.1093/genetics/iyae006
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- Article
Dispersal inference from population genetic variation using a convolutional neural network.
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- Genetics, 2023, v. 224, n. 2, p. 1, doi. 10.1093/genetics/iyad068
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- Article
Evaluating human autosomal loci for sexually antagonistic viability selection in two large biobanks.
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- Genetics, 2021, v. 217, n. 1, p. 1, doi. 10.1093/genetics/iyaa015
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- Article
Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data.
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- Genetics, 2020, v. 215, n. 1, p. 193, doi. 10.1534/genetics.120.303143
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- Article
Exact Calculation of the Joint Allele Frequency Spectrum for Isolation with Migration Models.
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- Genetics, 2017, v. 207, n. 1, p. 241, doi. 10.1534/genetics.116.194019
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- Article
Effects of Linked Selective Sweeps on Demographic Inference and Model Selection.
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- Genetics, 2016, v. 204, n. 3, p. 1207, doi. 10.1534/genetics.116.190223
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- Article
Soft Shoulders Ahead: Spurious Signatures of Soft and Partial Selective Sweeps Result from Linked Hard Sweeps.
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- Genetics, 2015, v. 200, n. 1, p. 267, doi. 10.1534/genetics.115.174912
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- Article
Parallel Geographic Variation in Drosophila melanogaster.
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- Genetics, 2014, v. 197, n. 1, p. 361, doi. 10.1534/genetics.114.161463
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- Article
GC-Biased Evolution Near Human Accelerated Regions.
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- PLoS Genetics, 2010, v. 6, n. 5, p. 1, doi. 10.1371/journal.pgen.1000960
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Forces Shaping the Fastest Evolving Regions in the Human Genome.
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- PLoS Genetics, 2006, v. 3, n. 4, p. 1599, doi. 10.1371/journal.pgen.0020168
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- Article
Estimation of spatial demographic maps from polymorphism data using a neural network.
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- Molecular Ecology Resources, 2024, v. 24, n. 7, p. 1, doi. 10.1111/1755-0998.14005
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- Article
Discoal: flexible coalescent simulations with selection.
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- Bioinformatics, 2016, v. 32, n. 24, p. 3839, doi. 10.1093/bioinformatics/btw556
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- Article
S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning.
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- PLoS Genetics, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pgen.1005928
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- Article