Found: 49

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  • GenBank.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D94, doi. 10.1093/nar/gky989
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Ostell, James;
    • Pruitt, Kim D;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • The international nucleotide sequence database collaboration.

    Published in:
    Nucleic Acids Research, 2018, v. 46, n. D1, p. D48, doi. 10.1093/nar/gkx1097
    By:
    • Karsch-Mizrachi, Ilene;
    • Takagi, Toshihisa;
    • Cochrane, Guy;
    • Collaboration, on behalf of the International Nucleotide Sequence Database
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2018, v. 46, n. D1, p. D741, doi. 10.1093/nar/gkx1094
    By:
    • Benson, Dennis A;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Karsch-Mizrachi, Ilene;
    • Ostell, James;
    • Pruitt, Kim D;
    • Sayers, Eric W
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D37, doi. 10.1093/nar/gkw1070
    By:
    • Benson, Dennis A.;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • The International Nucleotide Sequence Database Collaboration.

    Published in:
    Nucleic Acids Research, 2016, v. 44, p. D48, doi. 10.1093/nar/gkv1323
    By:
    • Cochrane, Guy;
    • Karsch-Mizrachi, Ilene;
    • Toshihisa Takagi
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2016, v. 44, n. 1, p. D67, doi. 10.1093/nar/gkv1276
    By:
    • Clark, Karen;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D30, doi. 10.1093/nar/gku1216
    By:
    • Benson, Dennis A.;
    • Clark, Karen;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D32, doi. 10.1093/nar/gkt1030
    By:
    • Benson, Dennis A.;
    • Clark, Karen;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.

    Published in:
    Nucleic Acids Research, 2012, p. D57, doi. 10.1093/nar/gkr1163
    By:
    • Barrett, Tanya;
    • Clark, Karen;
    • Gevorgyan, Robert;
    • Gorelenkov, Vyacheslav;
    • Gribov, Eugene;
    • Karsch-Mizrachi, Ilene;
    • Kimelman, Michael;
    • Pruitt, Kim D.;
    • Resenchuk, Sergei;
    • Tatusova, Tatiana;
    • Yaschenko, Eugene;
    • Ostell, James
    Publication type:
    Article

  • The International Nucleotide Sequence Database Collaboration.

    Published in:
    Nucleic Acids Research, 2012, p. D33, doi. 10.1093/nar/gkr1006
    By:
    • Karsch-Mizrachi, Ilene;
    • Nakamura, Yasukazu;
    • Cochrane, Guy
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2012, p. D48, doi. 10.1093/nar/gkr1202
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Clark, Karen;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • The International Nucleotide Sequence Database Collaboration.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D15
    By:
    • Cochrane, Guy;
    • Karsch-Mizrachi, Ilene;
    • Nakamura, Yasukazu
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D32, doi. 10.1093/nar/gkq1079
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2010, v. 38, p. D46, doi. 10.1093/nar/gkp1024
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D26, doi. 10.1093/nar/gkn723
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Sayers, Eric W.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D25
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Wheeler, David L.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d21, doi. 10.1093/nar/gkl986
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Wheeler, David L.
    Publication type:
    Article

  • Author Correction: Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification.

    Published in:
    2023
    By:
    • Adriaenssens, Evelien M.;
    • Roux, Simon;
    • Brister, J. Rodney;
    • Karsch-Mizrachi, Ilene;
    • Kuhn, Jens H.;
    • Varsani, Arvind;
    • Yigang, Tong;
    • Reyes, Alejandro;
    • Lood, Cédric;
    • Lefkowitz, Elliot J.;
    • Sullivan, Matthew B.;
    • Edwards, Robert A.;
    • Simmonds, Peter;
    • Rubino, Luisa;
    • Sabanadzovic, Sead;
    • Krupovic, Mart;
    • Dutilh, Bas E.
    Publication type:
    Correction Notice

  • Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification.

    Published in:
    2023
    By:
    • Adriaenssens, Evelien M.;
    • Roux, Simon;
    • Brister, J. Rodney;
    • Karsch-Mizrachi, Ilene;
    • Kuhn, Jens H.;
    • Varsani, Arvind;
    • Yigang, Tong;
    • Reyes, Alejandro;
    • Lood, Cédric;
    • Lefkowitz, Elliot J.;
    • Sullivan, Matthew B.;
    • Edwards, Robert A.;
    • Simmonds, Peter;
    • Rubino, Luisa;
    • Sabanadzovic, Sead;
    • Krupovic, Mart;
    • Dutilh, Bas E.
    Publication type:
    Letter

  • Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

    Published in:
    2011
    By:
    • Yilmaz, Pelin;
    • Kottmann, Renzo;
    • Field, Dawn;
    • Knight, Rob;
    • Cole, James R.;
    • Amaral-Zettler, Linda;
    • Gilbert, Jack A.;
    • Karsch-Mizrachi, Ilene;
    • Johnston, Anjanette;
    • Cochrane, Guy;
    • Vaughan, Robert;
    • Hunter, Christopher;
    • Park, Joonhong;
    • Morrison, Norman;
    • Rocca-Serra, Philippe;
    • Sterk, Peter;
    • Arumugam, Manimozhiyan;
    • Bailey, Mark;
    • Baumgartner, Laura;
    • Birren, Bruce W.
    Publication type:
    Opinion

  • The genomic standards consortium: bringing standards to life for microbial ecology.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 10, p. 1565, doi. 10.1038/ismej.2011.39
    By:
    • Yilmaz, Pelin;
    • Gilbert, Jack A;
    • Knight, Rob;
    • Amaral-Zettler, Linda;
    • Karsch-Mizrachi, Ilene;
    • Cochrane, Guy;
    • Nakamura, Yasukazu;
    • Sansone, Susanna-Assunta;
    • Glöckner, Frank Oliver;
    • Field, Dawn
    Publication type:
    Article

  • Meeting report: GenBank microbial genomic taxonomy workshop (12-13 May, 2015).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0134-1
    By:
    • Federhen, Scott;
    • Rossello-Mora, Ramon;
    • Klenk, Hans-Peter;
    • Tindall, Brian;
    • Konstantinidis, Konstantinos;
    • Whitman, William;
    • Brown, Daniel;
    • Labeda, David;
    • Ussery, David;
    • Garrity, George;
    • Colwell, Rita;
    • Hasan, Nur;
    • Graf, Joerg;
    • Parte, Aidan;
    • Yarza, Pablo;
    • Goldberg, Brittany;
    • Sichtig, Heike;
    • Karsch-Mizrachi, Ilene;
    • Clark, Karen;
    • McVeigh, Richard
    Publication type:
    Article

  • Genomic Standards Consortium Projects.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 599, doi. 10.4056/sigs.5559680
    By:
    • Field, Dawn;
    • Sterk, Peter;
    • Kottmann, Renzo;
    • Smet, J.;
    • Amaral-Zettler, Linda;
    • Cochrane, Guy;
    • Cole, James;
    • Davies, Neil;
    • Dawyndt, Peter;
    • Garrity, George;
    • Gilbert, Jack;
    • Glöckner, Frank;
    • Hirschman, Lynette;
    • Klenk, Hans-Peter;
    • Knight, Rob;
    • Kyrpides, Nikos;
    • Meyer, Folker;
    • Karsch-Mizrachi, Ilene;
    • Morrison, Norman;
    • Robbins, Robert
    Publication type:
    Article

  • Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1275, doi. 10.4056/sigs.4851102
    By:
    • Federhen, Scott;
    • Clark, Karen;
    • Barrett, Tanya;
    • Parkinson, Helen;
    • Ostell, James;
    • Kodama, Yuichi;
    • Mashima, Jun;
    • Nakamura, Yasukazu;
    • Cochrane, Guy;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.

    Published in:
    GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac003
    By:
    • Griffiths, Emma J;
    • Timme, Ruth E;
    • Mendes, Catarina Inês;
    • Page, Andrew J;
    • Alikhan, Nabil-Fareed;
    • Fornika, Dan;
    • Maguire, Finlay;
    • Campos, Josefina;
    • Park, Daniel;
    • Olawoye, Idowu B;
    • Oluniyi, Paul E;
    • Anderson, Dominique;
    • Christoffels, Alan;
    • da Silva, Anders Gonçalves;
    • Cameron, Rhiannon;
    • Dooley, Damion;
    • Katz, Lee S;
    • Black, Allison;
    • Karsch-Mizrachi, Ilene;
    • Barrett, Tanya
    Publication type:
    Article

  • Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac006
    By:
    • Underwood, Beverly A;
    • Yankie, Linda;
    • Nawrocki, Eric P;
    • Palanigobu, Vasuki;
    • Gotvyanskyy, Sergiy;
    • Calhoun, Vincent C;
    • Kornbluh, Michael;
    • Smith, Thomas G;
    • Fleischmann, Lydia;
    • Sinyakov, Denis;
    • Bollin, Colleen J;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • NCBI Taxonomy: a comprehensive update on curation, resources and tools.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa062
    By:
    • Schoch, Conrad L;
    • Ciufo, Stacy;
    • Domrachev, Mikhail;
    • Hotton, Carol L;
    • Kannan, Sivakumar;
    • Khovanskaya, Rogneda;
    • Leipe, Detlef;
    • Mcveigh, Richard;
    • O'Neill, Kathleen;
    • Robbertse, Barbara;
    • Sharma, Shobha;
    • Soussov, Vladimir;
    • Sullivan, John P;
    • Sun, Lu;
    • Turner, Seán;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • The NCBI BioCollections Database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz057
    By:
    • Sharma, Shobha;
    • Ciufo, Stacy;
    • Starchenko, Elena;
    • Darji, Dakshesh;
    • Chlumsky, Larry;
    • Karsch-Mizrachi, Ilene;
    • Schoch, Conrad L
    Publication type:
    Article

  • The NCBI BioCollections Database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay006
    By:
    • Sharma, Shobha;
    • Ciufo, Stacy;
    • Starchenko, Elena;
    • Darji, Dakshesh;
    • Chlumsky, Larry;
    • Karsch-Mizrachi, Ilene;
    • Schoch, Conrad L
    Publication type:
    Article

  • Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.

    Published in:
    2012
    By:
    • Gaudet, Pascale;
    • Arighi, Cecilia;
    • Bastian, Frederic;
    • Bateman, Alex;
    • Blake, Judith A.;
    • Cherry, Michael J.;
    • D’Eustachio, Peter;
    • Finn, Robert;
    • Giglio, Michelle;
    • Hirschman, Lynette;
    • Kania, Renate;
    • Klimke, William;
    • Martin, Maria Jesus;
    • Karsch-Mizrachi, Ilene;
    • Munoz-Torres, Monica;
    • Natale, Darren;
    • O’Donovan, Claire;
    • Ouellette, Francis;
    • Pruitt, Kim D.;
    • Robinson-Rechavi, Marc
    Publication type:
    Proceeding

  • GenBank.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d16, doi. 10.1093/nar/gkj157
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Wheeler, David L.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d34
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Wheeler, David L.
    Publication type:
    Article

  • GenBank: update.

    Published in:
    Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d23
    By:
    • Benson, Dennis A.;
    • Karsch‐Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Wheeler, David L.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2003, v. 31, n. 1, p. 23, doi. 10.1093/nar/gkg057
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Wheeler, David L.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2002, v. 30, n. 1, p. 17, doi. 10.1093/nar/30.1.17
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Rapp, Barbara A.;
    • Wheeler, David L.
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2000, v. 28, n. 1, p. 15, doi. 10.1093/nar/28.1.15
    By:
    • Benson, Dennis A.;
    • Karsch-Mizrachi, Ilene;
    • Lipman, David J.;
    • Ostell, James;
    • Rapp, Barbara A.;
    • Wheeler, David L.
    Publication type:
    Article

  • VADR: validation and annotation of virus sequence submissions to GenBank.

    Published in:
    BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3537-3
    By:
    • Schäffer, Alejandro A.;
    • Hatcher, Eneida L.;
    • Yankie, Linda;
    • Shonkwiler, Lara;
    • Brister, J. Rodney;
    • Karsch-Mizrachi, Ilene;
    • Nawrocki, Eric P.
    Publication type:
    Article

  • The Genomic Standards Consortium.

    Published in:
    PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001088
    By:
    • Field, Dawn;
    • Amaral-Zettler, Linda;
    • Cochrane, Guy;
    • Cole, James R.;
    • Dawyndt, Peter;
    • Garrity, George M.;
    • Gilbert, Jack;
    • Glöckner, Frank Oliver;
    • Hirschman, Lynette;
    • Karsch-Mizrachi, Ilene;
    • Klenk, Hans-Peter;
    • Knight, Rob;
    • Kottmann, Renzo;
    • Kyrpides, Nikos;
    • Meyer, Folker;
    • Gil, Inigo San;
    • Sansone, Susanna-Assunta;
    • Schriml, Lynn M.;
    • Sterk, Peter;
    • Tatusova, Tatiana
    Publication type:
    Article

  • Complete genomes in WWW Entrez: data representation and analysis.

    Published in:
    Bioinformatics, 1999, v. 15, n. 7, p. 536, doi. 10.1093/bioinformatics/15.7.536
    By:
    • Tatusova, Tatiana A.;
    • Karsch‐Mizrachi, Ilene;
    • Ostell, James A.
    Publication type:
    Article

  • GenBank 2024 Update.

    Published in:
    Nucleic Acids Research, 2024, v. 52, n. D1, p. D134, doi. 10.1093/nar/gkad903
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Sherry, Stephen T;
    • Yankie, Linda;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank 2023 update.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D141, doi. 10.1093/nar/gkac1012
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Sherry, Stephen T;
    • Yankie, Linda;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2022, v. 50, n. D1, p. D161, doi. 10.1093/nar/gkab1135
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Schoch, Conrad L;
    • Sherry, Stephen T;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • The international nucleotide sequence database collaboration.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. D1, p. D121, doi. 10.1093/nar/gkaa967
    By:
    • Arita, Masanori;
    • Karsch-Mizrachi, Ilene;
    • Cochrane, Guy
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. D1, p. D92, doi. 10.1093/nar/gkaa1023
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Pruitt, Kim D;
    • Schoch, Conrad L;
    • Sherry, Stephen T;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • GenBank.

    Published in:
    Nucleic Acids Research, 2020, v. 48, n. D1, p. D84, doi. 10.1093/nar/gkz956
    By:
    • Sayers, Eric W;
    • Cavanaugh, Mark;
    • Clark, Karen;
    • Ostell, James;
    • Pruitt, Kim D;
    • Karsch-Mizrachi, Ilene
    Publication type:
    Article

  • In memoriam - Scott Federhen (October 21, 1952 - May 5, 2016).

    Published in:
    2016
    By:
    • Schoch, Conrad L.;
    • Karsch-Mizrachi, Ilene;
    • Ostell, James M.
    Publication type:
    Obituary

  • VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening.

    Published in:
    Bioinformatics, 2018, v. 34, n. 5, p. 755, doi. 10.1093/bioinformatics/btx669
    By:
    • Schäffer, Alejandro A;
    • Nawrocki, Eric P;
    • Choi, Yoon;
    • Kitts, Paul A;
    • Karsch-Mizrachi, Ilene;
    • McVeigh, Richard
    Publication type:
    Article

  • Towards Linked Open Molecular Data: Recommendations for researchers, collections, infrastructures and publishers.

    Published in:
    2019
    By:
    • Droege, Gabriele;
    • Karsch-Mizrachi, Ilene;
    • Barker, Katharine;
    • Coddington, Jonathan;
    • Seberg, Ole
    Publication type:
    Abstract

  • Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation.

    Published in:
    BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04316-z
    By:
    • Schäffer, Alejandro A.;
    • McVeigh, Richard;
    • Robbertse, Barbara;
    • Schoch, Conrad L.;
    • Johnston, Anjanette;
    • Underwood, Beverly A.;
    • Karsch-Mizrachi, Ilene;
    • Nawrocki, Eric P.
    Publication type:
    Article