Works matching AU Kanapin, Alexander

Results: 33

The Genetic Landscape of Fiber Flax.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.764612

By:

Duk, Maria;
Kanapin, Alexander;
Rozhmina, Tatyana;
Bankin, Mikhail;
Surkova, Svetlana;
Samsonova, Anastasia;
Samsonova, Maria

Publication type:

Article

Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines.

Published in:

Mobile DNA, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13100-020-0204-1

By:

Tatkiewicz, Witold;
Dickie, James;
Bedford, Franchesca;
Jones, Alexander;
Atkin, Mark;
Kiernan, Michele;
Maze, Emmanuel Atangana;
Agit, Bora;
Farnham, Garry;
Kanapin, Alexander;
Belshaw, Robert

Publication type:

Article

A Combined Effect of Polygenic Scores and Environmental Factors on Individual Differences in Depression Level.

Published in:

Genes, 2023, v. 14, n. 7, p. 1355, doi. 10.3390/genes14071355

By:

Kazantseva, Anastasiya;
Davydova, Yuliya;
Enikeeva, Renata;
Mustafin, Rustam;
Malykh, Sergey;
Lobaskova, Marina;
Kanapin, Alexander;
Prokopenko, Inga;
Khusnutdinova, Elza

Publication type:

Article

PRMT5 promotes cancer cell migration and invasion through the E2F pathway.

Published in:

Cell Death & Disease, 2020, v. 11, n. 7, p. 1, doi. 10.1038/s41419-020-02771-9

By:

Barczak, Wojciech;
Jin, Li;
Carr, Simon Mark;
Munro, Shonagh;
Ward, Samuel;
Kanapin, Alexander;
Samsonova, Anastasia;
La Thangue, Nicholas B.

Publication type:

Article

Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis.

Published in:

Nature Genetics, 2013, v. 45, n. 10, p. 1261, doi. 10.1038/ng1013-1261a

By:

Sharma, Vikram P;
Fenwick, Aimée L;
Brockop, Mia S;
McGowan, Simon J;
Goos, Jacqueline A C;
Hoogeboom, A Jeannette M;
Brady, Angela F;
Jeelani, Nu Owase;
Lynch, Sally Ann;
Mulliken, John B;
Murray, Dylan J;
Phipps, Julie M;
Sweeney, Elizabeth;
Tomkins, Susan E;
Wilson, Louise C;
Bennett, Sophia;
Cornall, Richard J;
Broxholme, John;
Kanapin, Alexander;
Johnson, David

Publication type:

Article

Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis.

Published in:

Nature Genetics, 2013, v. 45, n. 3, p. 304, doi. 10.1038/ng.2531

By:

Sharma, Vikram P;
Fenwick, Aimée L;
Brockop, Mia S;
McGowan, Simon J;
Goos, Jacqueline A C;
Hoogeboom, A Jeannette M;
Brady, Angela F;
Jeelani, Nu Owase;
Lynch, Sally Ann;
Mulliken, John B;
Murray, Dylan J;
Phipps, Julie M;
Sweeney, Elizabeth;
Tomkins, Susan E;
Wilson, Louise C;
Bennett, Sophia;
Cornall, Richard J;
Broxholme, John;
Kanapin, Alexander;
Johnson, David

Publication type:

Article

Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity.

Published in:

BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-S1-S4

By:

Kanapin, Alexander A.;
Mulder, Nicola;
Kuznetsov, Vladimir A.

Publication type:

Article

BSXplorer: analytical framework for exploratory analysis of BS-seq data.

Published in:

BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05722-9

By:

Yuditskiy, Konstantin;
Bezdvornykh, Igor;
Kazantseva, Anastasiya;
Kanapin, Alexander;
Samsonova, Anastasia

Publication type:

Article

A point mutation in the ion conduction pore of AMP A receptor GRIA3 causes dramatically perturbed sleep patterns as well as intellectual disability.

Published in:

Human Molecular Genetics, 2017, v. 26, n. 20, p. 3869, doi. 10.1093/hmg/ddx270

By:

Davies, Benjamin;
Brown, Laurence A.;
Cais, Ondrej;
Watson, Jake;
Clayton, Amber J.;
Chang, Veronica T.;
Biggs, Daniel;
Preece, Christopher;
Hernandez-Pliego, Polinka;
Krohn, Jon;
Bhomra, Amarjit;
Twigg, Stephen R. F.;
Rimmer, Andrew;
Kanapin, Alexander;
Sen, Arjune;
Zaiwalla, Zenobia;
McVean, Gil;
Foster, Russell;
Donnelly, Peter;
Taylor, Jenny C.

Publication type:

Article

Clinical whole-genome sequencing in severe early-onset epilepsy reveals new genes and improves molecular diagnosis.

Published in:

Human Molecular Genetics, 2014, v. 23, n. 12, p. 3200

By:

Martin, Hilary C.;
Kim, Grace E.;
Pagnamenta, Alistair T.;
Murakami, Yoshiko;
Carvill, Gemma L.;
Meyer, Esther;
Copley, Richard R.;
Rimmer, Andrew;
Barcia, Giulia;
Fleming, Matthew R.;
Kronengold, Jack;
Brown, Maile R.;
Hudspith, Karl A.;
Broxholme, John;
Kanapin, Alexander;
Cazier, Jean-Baptiste;
Kinoshita, Taroh;
Nabbout, Rima;
Bentley, David;
McVean, Gil

Publication type:

Article

Long non-coding RNA-derived peptides are immunogenic and drive a potent anti-tumour response.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36826-0

By:

Barczak, Wojciech;
Carr, Simon M.;
Liu, Geng;
Munro, Shonagh;
Nicastri, Annalisa;
Lee, Lian Ni;
Hutchings, Claire;
Ternette, Nicola;
Klenerman, Paul;
Kanapin, Alexander;
Samsonova, Anastasia;
La Thangue, Nicholas B.

Publication type:

Article

RASSF1A uncouples Wnt from Hippo signalling and promotes YAP mediated differentiation via p73.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02786-5

By:

Papaspyropoulos, Angelos;
Bradley, Leanne;
Thapa, Asmita;
Chuen Yan Leung;
Toskas, Konstantinos;
Koennig, Delia;
Pefani, Dafni-Eleftheria;
Raso, Cinzia;
Grou, Claudia;
Hamilton, Garth;
Vlahov, Nikola;
Grawenda, Anna;
Haider, Syed;
Chauhan, Jagat;
Buti, Ludovico;
Kanapin, Alexander;
Xin Lu;
Buffa, Francesca;
Dianov, Grigory;
von Kriegsheim, Alex

Publication type:

Article

Applications of InterPro in protein annotation and genome analysis.

Published in:

Briefings in Bioinformatics, 2002, v. 3, n. 3, p. 285, doi. 10.1093/bib/3.3.285

By:

Biswas, Margaret;
O'Rourke, John F.;
Camon, Evelyn;
Fraser, Gill;
Kanapin, Alexander;
Karavidopoulou, Youla;
Kersey, Paul;
Kriventseva, Evgenia;
Mittard, Virginie;
Mulder, Nicola;
Phan, Isabelle;
Servant, Florence;
Apweiler, Rolf

Publication type:

Article

IIIVmrMLM Provides New Insights into the Genetic Basis of the Agronomic Trait Variation in Chickpea.

Published in:

Agronomy, 2024, v. 14, n. 8, p. 1762, doi. 10.3390/agronomy14081762

By:

Duk, Maria;
Kanapin, Alexander;
Orlova, Ekaterina;
Samsonova, Maria

Publication type:

Article

Pangenomics of flax fungal parasite Fusarium oxysporum f. sp. lini.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1383914

By:

Logachev, Anton;
Kanapin, Alexander;
Rozhmina, Tatyana;
Stanin, Vladislav;
Bankin, Mikhail;
Samsonov, Anastasia;
Orlova, Ekaterina;
Samsonova, Maria

Publication type:

Article

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Published in:

Nature, 2003, v. 421, n. 6920, p. 231, doi. 10.1038/nature01278

By:

Kamath, Ravi S.;
Fraser, Andrew G.;
Dong, Yan;
Poulin, Gino;
Durbin, Richard;
Gotta, Monica;
Kanapin, Alexander;
Le Bot, Nathalie;
Moreno, Sergio;
Sohrmann, Marc;
Welchman, David P.;
Zipperlen, Peder;
Ahringer, Julie

Publication type:

Article

A Genome-Wide Association Study Reveals a BDNF -Centered Molecular Network Associated with Alcohol Dependence and Related Clinical Measures.

Published in:

Biomedicines, 2022, v. 10, n. 12, p. 3007, doi. 10.3390/biomedicines10123007

By:

Levchenko, Anastasia;
Malov, Sergey;
Antonik, Alexey;
Protsvetkina, Anastasia;
Rybakova, Kseniya V.;
Kanapin, Alexander;
Yakovlev, Alexey N.;
Nenasteva, Anna Y.;
Nikolishin, Anton E.;
Cherkasov, Nikolay;
Chuprova, Natalia A.;
Blagonravova, Anna S.;
Sergeeva, Angelica V.;
Zhilyaeva, Tatyana V.;
Denisenko, Maria K.;
Gainetdinov, Raul R.;
Kibitov, Alexander O.;
Krupitsky, Evgeny M.

Publication type:

Article

Stochastic Effects in Retrotransposon Dynamics Revealed by Modeling under Competition for Cellular Resources.

Published in:

Life (2075-1729), 2021, v. 11, n. 11, p. 1209, doi. 10.3390/life11111209

By:

Pavlov, Sergey;
Gursky, Vitaly V.;
Samsonova, Maria;
Kanapin, Alexander;
Samsonova, Anastasia

Publication type:

Article

Host Genetic Variants Linked to COVID-19 Neurological Complications and Susceptibility in Young Adults—A Preliminary Analysis.

Published in:

Journal of Personalized Medicine, 2023, v. 13, n. 1, p. 123, doi. 10.3390/jpm13010123

By:

Kazantseva, Anastasiya;
Enikeeva, Renata;
Takhirova, Zalina;
Davydova, Yuliya;
Mustafin, Rustam;
Malykh, Sergey;
Karunas, Alexandra;
Kanapin, Alexander;
Khusnutdinova, Elza

Publication type:

Article

Human Accelerated Regions and Other Human-Specific Sequence Variations in the Context of Evolution and Their Relevance for Brain Development.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 1, p. 166, doi. 10.1093/gbe/evx240

By:

Levchenko, Anastasia;
Kanapin, Alexander;
Samsonova, Anastasia;
Gainetdinov, Raul R.

Publication type:

Article

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d297

By:

Kersey, Paul;
Bower, Lawrence;
Morris, Lorna;
Horne, Alan;
Petryszak, Robert;
Kanz, Carola;
Kanapin, Alexander;
Das, Ujjwal;
Michoud, Karine;
Phan, Isabelle;
Gattiker, Alexandre;
Kulikova, Tamara;
Faruque, Nadeem;
Duggan, Karyn;
Mclaren, Peter;
Reimholz, Britt;
Duret, Laurent;
Penel, Simon;
Reuter, Ingmar;
Apweiler, Rolf

Publication type:

Article

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 414, doi. 10.1093/nar/gkg105

By:

Pruess, Manuela;
Fleischmann, Wolfgang;
Kanapin, Alexander;
Karavidopoulou, Youla;
Kersey, Paul;
Kriventseva, Evgenia;
Mittard, Virginie;
Mulder, Nicola;
Phan, Isabelle;
Servant, Florence;
Apweiler, Rolf

Publication type:

Article

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 1, p. 44, doi. 10.1093/nar/29.1.44

By:

Apweiler, Rolf;
Biswas, Margaret;
Fleischmann, Wolfgang;
Kanapin, Alexander;
Karavidopoulou, Youla;
Kersey, Paul;
Kriventseva, Evgenia V.;
Mittard, Virginie;
Mulder, Nicola;
Phan, Isabelle;
Zdobnov, Evgeni

Publication type:

Article

Amyloid Fibrils of the s36 Protein Modulate the Morphogenesis of Drosophila melanogaster Eggshell.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 23, p. 12499, doi. 10.3390/ijms252312499

By:

Valina, Anna A.;
Siniukova, Vera A.;
Belashova, Tatyana A.;
Kanapin, Alexander A.;
Samsonova, Anastasia A.;
Masharsky, Alexey E.;
Lykholay, Anna N.;
Galkina, Svetlana A.;
Zadorsky, Sergey P.;
Galkin, Alexey P.

Publication type:

Article

Transcriptomic Analysis of Flowering Time Genes in Cultivated Chickpea and Wild Cicer.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 2692, doi. 10.3390/ijms24032692

By:

Gretsova, Maria;
Surkova, Svetlana;
Kanapin, Alexander;
Samsonova, Anastasia;
Logacheva, Maria;
Shcherbakov, Andrey;
Logachev, Anton;
Bankin, Mikhail;
Nuzhdin, Sergey;
Samsonova, Maria

Publication type:

Article

Genetic Determinants of Fiber-Associated Traits in Flax Identified by Omics Data Integration.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 14536, doi. 10.3390/ijms232314536

By:

Kanapin, Alexander;
Rozhmina, Tatyana;
Bankin, Mikhail;
Surkova, Svetlana;
Duk, Maria;
Osyagina, Ekaterina;
Samsonova, Maria

Publication type:

Article

Genomic Regions Associated with Fusarium Wilt Resistance in Flax.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 22, p. 12383, doi. 10.3390/ijms222212383

By:

Kanapin, Alexander;
Bankin, Mikhail;
Rozhmina, Tatyana;
Samsonova, Anastasia;
Samsonova, Maria

Publication type:

Article

A Genomic Blueprint of Flax Fungal Parasite Fusarium oxysporum f. sp. lini.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 5, p. 2665, doi. 10.3390/ijms22052665

By:

Samsonova, Anastasia;
Kanapin, Alexander;
Bankin, Michael;
Logachev, Anton;
Gretsova, Maria;
Rozhmina, Tatyana;
Samsonova, Maria;
Burkovski, Andreas

Publication type:

Article

Pygenomics: manipulating genomic intervals and data files in Python.

Published in:

Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad346

By:

Tamazian, Gaik;
Cherkasov, Nikolay;
Kanapin, Alexander;
Samsonova, Anastasia

Publication type:

Article

Correction to: Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines.

Published in:

2020

By:

Tatkiewicz, Witold;
Dickie, James;
Bedford, Franchesca;
Jones, Alexander;
Atkin, Mark;
Kiernan, Michele;
Maze, Emmanuel Atangana;
Agit, Bora;
Farnham, Garry;
Kanapin, Alexander;
Belshaw, Robert

Publication type:

Correction Notice

A collection of read depth profiles at structural variant breakpoints.

Published in:

Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02076-4

By:

Bezdvornykh, Igor;
Cherkasov, Nikolay;
Kanapin, Alexander;
Samsonova, Anastasia

Publication type:

Article

Sustained cancer‐relevant alternative RNA splicing events driven by PRMT5 in high‐risk neuroblastoma.

Published in:

Molecular Oncology, 2025, v. 19, n. 3, p. 741, doi. 10.1002/1878-0261.13702

By:

Bate‐Eya, Laurel Tabe;
Albayrak, Gulsah;
Carr, Simon Mark;
Shrestha, Amit;
Kanapin, Alexander;
Samsonova, Anastasia;
La Thangue, Nicholas Barrie

Publication type:

Article

Recessive Mutations in SPTBN2 Implicate β-III Spectrin in Both Cognitive and Motor Development.

Published in:

PLoS Genetics, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.pgen.1003074

By:

Lise, Stefano;
Clarkson, Yvonne;
Perkins, Emma;
Kwasniewska, Alexandra;
Akha, Elham Sadighi;
Schnekenberg, Ricardo Parolin;
Suminaite, Daumante;
Hope, Jilly;
Baker, Ian;
Gregory, Lorna;
Green, Angie;
Allan, Chris;
Lamble, Sarah;
Jayawant, Sandeep;
Quaghebeur, Gerardine;
Cader, M. Zameel;
Hughes, Sarah;
Armstrong, Richard J. E.;
Kanapin, Alexander;
Rimmer, Andrew

Publication type:

Article