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Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53566-x
By:
- Spottiswoode, Natasha;
- Tsitsiklis, Alexandra;
- Chu, Victoria T.;
- Phan, Hoang Van;
- DeVoe, Catherine;
- Love, Christina;
- Ghale, Rajani;
- Bloomstein, Joshua;
- Zha, Beth Shoshana;
- Maguire, Cole P.;
- Glascock, Abigail;
- Sarma, Aartik;
- Mourani, Peter M.;
- Kalantar, Katrina L.;
- Detweiler, Angela;
- Neff, Norma;
- Haller, Sidney C.;
- Caldera, Saharai;
- Doernberg, Sarah B.;
- Mick, Eran
Publication type:
Article
Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers.
Published in:
2019
By:
- Langelier, Charles;
- Graves, Michael;
- Kalantar, Katrina;
- Caldera, Saharai;
- Durrant, Robert;
- Fisher, Mark;
- Backman, Richard;
- Tanner, Windy;
- DeRisi, Joseph L.;
- Leung, Daniel T.
Publication type:
journal article
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections.
Published in:
Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01072-4
By:
- Serpa, Paula Hayakawa;
- Deng, Xianding;
- Abdelghany, Mazin;
- Crawford, Emily;
- Malcolm, Katherine;
- Caldera, Saharai;
- Fung, Monica;
- McGeever, Aaron;
- Kalantar, Katrina L.;
- Lyden, Amy;
- Ghale, Rajani;
- Deiss, Thomas;
- Neff, Norma;
- Miller, Steven A.;
- Doernberg, Sarah B.;
- Chiu, Charles Y.;
- DeRisi, Joseph L.;
- Calfee, Carolyn S.;
- Langelier, Charles R.
Publication type:
Article
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections.
Published in:
Genome Medicine, 2022, v. 14, p. 1, doi. 10.1186/s13073-022-01072-4
By:
- Serpa, Paula Hayakawa;
- Deng, Xianding;
- Abdelghany, Mazin;
- Crawford, Emily;
- Malcolm, Katherine;
- Caldera, Saharai;
- Fung, Monica;
- McGeever, Aaron;
- Kalantar, Katrina L.;
- Lyden, Amy;
- Ghale, Rajani;
- Deiss, Thomas;
- Neff, Norma;
- Miller, Steven A.;
- Doernberg, Sarah B.;
- Chiu, Charles Y.;
- DeRisi, Joseph L.;
- Calfee, Carolyn S.;
- Langelier, Charles R.
Publication type:
Article
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
Published in:
GigaScience, 2020, v. 9, n. 10, p. 1, doi. 10.1093/gigascience/giaa111
By:
- Kalantar, Katrina L;
- Carvalho, Tiago;
- de Bourcy, Charles F A;
- Dimitrov, Boris;
- Dingle, Greg;
- Egger, Rebecca;
- Han, Julie;
- Holmes, Olivia B;
- Juan, Yun-Fang;
- King, Ryan;
- Kislyuk, Andrey;
- Lin, Michael F;
- Mariano, Maria;
- Morse, Todd;
- Reynoso, Lucia V;
- Cruz, David Rissato;
- Sheu, Jonathan;
- Tang, Jennifer;
- Wang, James;
- Zhang, Mark A
Publication type:
Article
Host and Microbe Blood Metagenomics Reveals Key Pathways Characterizing Critical Illness Phenotypes.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2024, v. 209, n. 7, p. 805, doi. 10.1164/rccm.202308-1328OC
By:
- Neyton, Lucile P. A.;
- Sinha, Pratik;
- Sarma, Aartik;
- Mick, Eran;
- Kalantar, Katrina;
- Chen, Stephanie;
- Wu, Nelson;
- Delucchi, Kevin;
- Zhuo, Hanjing;
- Bos, Lieuwe D. J.;
- Jauregui, Alejandra;
- Gomez, Antonio;
- Hendrickson, Carolyn M.;
- Kangelaris, Kirsten N.;
- Leligdowicz, Aleksandra;
- Liu, Kathleen D.;
- Matthay, Michael A.;
- Langelier, Charles R.;
- Calfee, Carolyn S.
Publication type:
Article
Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients.
Published in:
2018
By:
- Langelier, Charles;
- Zinter, Matt S.;
- Kalantar, Katrina;
- Yanik, Gregory A.;
- Christenson, Stephanie;
- O'Donovan, Brian;
- White, Corin;
- Wilson, Michael;
- Sapru, Anil;
- Dvorak, Christopher C.;
- Miller, Steve;
- Chiu, Charles Y.;
- DeRisi, Joseph L.
Publication type:
Letter
Whole-Genome mRNA Gene Expression Differs Between Patients With and Without Delirium.
Published in:
2018
By:
- Kalantar, Katrina;
- LaHue, Sara C.;
- DeRisi, Joseph L.;
- Sample, Hannah A.;
- Contag, Caitlin A.;
- Josephson, Scott A.;
- Wilson, Michael R.;
- Douglas, Vanja C.
Publication type:
journal article
Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children.
Published in:
Clinical Infectious Diseases, 2019, v. 68, n. 11, p. 1847, doi. 10.1093/cid/ciy802
By:
- Zinter, Matt S;
- Dvorak, Christopher C;
- Mayday, Madeline Y;
- Iwanaga, Kensho;
- Ly, Ngoc P;
- McGarry, Meghan E;
- Church, Gwynne D;
- Faricy, Lauren E;
- Rowan, Courtney M;
- Hume, Janet R;
- Steiner, Marie E;
- Crawford, Emily D;
- Langelier, Charles;
- Kalantar, Katrina;
- Chow, Eric D;
- Miller, Steve;
- Shimano, Kristen;
- Melton, Alexis;
- Yanik, Gregory A;
- Sapru, Anil
Publication type:
Article
Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.81401
By:
- Raghavan, Madhura;
- Kalantar, Katrina L.;
- Duarte, Elias;
- Teyssier, Noam;
- Takahashi, Saki;
- Kung, Andrew F.;
- Rajan, Jayant V.;
- Rek, John;
- Tetteh, Kevin K. A.;
- Drakeley, Chris;
- Ssewanyana, Isaac;
- Rodriguez-Barraquer, Isabel;
- Greenhouse, Bryan;
- DeRisi, Joseph L.
Publication type:
Article
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda.
Published in:
PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0218318
By:
- Ramesh, Akshaya;
- Nakielny, Sara;
- Hsu, Jennifer;
- Kyohere, Mary;
- Byaruhanga, Oswald;
- de Bourcy, Charles;
- Egger, Rebecca;
- Dimitrov, Boris;
- Juan, Yun-Fang;
- Sheu, Jonathan;
- Wang, James;
- Kalantar, Katrina;
- Langelier, Charles;
- Ruel, Theodore;
- Mpimbaza, Arthur;
- Wilson, Michael R.;
- Rosenthal, Philip J.;
- DeRisi, Joseph L.
Publication type:
Article

Found: 11