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Tools and methodology to in silico phage discovery in freshwater environments.
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1390726
By:
- Dias Dantas, Carlos Willian;
- Tavares Martins, David;
- Guimarães Nogueira, Wylerson;
- Cardenas Alegria, Oscar Victor;
- Jucá Ramos, Rommel Thiago
Publication type:
Article
Genomic Characterization of Aeromonas veronii Provides Insights into Taxonomic Assignment and Reveals Widespread Virulence and Resistance Genes throughout the World.
Published in:
Antibiotics (2079-6382), 2023, v. 12, n. 6, p. 1039, doi. 10.3390/antibiotics12061039
By:
- Maia, José Cleves da Silva;
- Silva, Gabriel Amorim de Albuquerque;
- Cunha, Letícia Stheffany de Barros;
- Gouveia, Gisele Veneroni;
- Góes-Neto, Aristóteles;
- Brenig, Bertram;
- Araújo, Fabrício Almeida;
- Aburjaile, Flávia;
- Ramos, Rommel Thiago Jucá;
- Soares, Siomar Castro;
- Azevedo, Vasco Ariston de Carvalho;
- Costa, Mateus Matiuzzi da;
- Gouveia, João José de Simoni
Publication type:
Article
Aeromonas allosaccharophila Strain AE59-TE2 Is Highly Antagonistic towards Multidrug-Resistant Human Pathogens, What Does Its Genome Tell Us?
Published in:
Life (2075-1729), 2022, v. 12, n. 10, p. 1492, doi. 10.3390/life12101492
By:
- Silva, Sheila da;
- Guedes, Fernanda Alves de Freitas;
- Amaral, João Ricardo Vidal;
- Ribeiro, José Roberto de Assis;
- Souza, Yuri Pinheiro Alves de;
- Freitas-Almeida, Ângela Correa de;
- Thompson, Fabiano Lopes;
- Ramos, Rommel Thiago Jucá;
- Whiteley, Andrew Steven;
- Macrae, Andrew;
- Oliveira, Selma Soares de
Publication type:
Article
Tips and tricks for the assembly of a Corynebacterium pseudotuberculosis genome using a semiconductor sequencer.
Published in:
Microbial Biotechnology, 2013, v. 6, n. 2, p. 150, doi. 10.1111/1751-7915.12006
By:
- Ramos, Rommel Thiago Jucá;
- Carneiro, Adriana Ribeiro;
- Soares, Siomar de Castro;
- Santos, Anderson Rodrigues dos;
- Almeida, Sintia;
- Guimarães, Luis;
- Figueira, Flávia;
- Barbosa, Eudes;
- Tauch, Andreas;
- Azevedo, Vasco;
- Silva, Artur
Publication type:
Article
Impacts of soybean agriculture on the resistome of the Amazonian soil.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.948188
By:
- Cardenas Alegria, Oscar;
- Pires Quaresma, Marielle;
- Dias Dantas, Carlos Willian;
- Silva Guedes Lobato, Elaine Maria;
- de Oliveira Aragão, Andressa;
- Patroca da Silva, Sandro;
- Barros da Silva, Amanda Costa;
- Ribeiro Cruz, Ana Cecília;
- Jucá Ramos, Rommel Thiago;
- Ribeiro Carneiro, Adriana
Publication type:
Article
A Novel Cell Line Derived from Pleomorphic Adenoma Expresses MMP2, MMP9, TIMP1, TIMP2, and Shows Numeric Chromosomal Anomalies.
Published in:
PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105231
By:
- Falcão, Aline Semblano Carreira;
- Kataoka, Maria Sueli da Silva;
- Ribeiro, Nélson Antonio Bailão;
- Diniz Jr, José Antonio Picanço;
- Alves Jr, Sérgio Melo;
- Ribeiro, André L. Ribeiro;
- Siqueira, Adriane Sousa de;
- da Silva, Artur Luiz;
- Ramos, Rommel Thiago Jucá;
- Freitas, Vanessa M.;
- Jaeger, Ruy G.;
- Pinheiro, João J. V.
Publication type:
Article
Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds.
Published in:
PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0052773
By:
- Barh, Debmalya;
- Barve, Neha;
- Gupta, Krishnakant;
- Chandra, Sudha;
- Jain, Neha;
- Tiwari, Sandeep;
- Leon-Sicairos, Nidia;
- Canizalez-Roman, Adrian;
- Santos, Anderson Rodrigues dos;
- Hassan, Syed Shah;
- Almeida, Síntia;
- Jucá Ramos, Rommel Thiago;
- de Abreu, Vinicius Augusto Carvalho;
- Carneiro, Adriana Ribeiro;
- de Castro Soares, Siomar;
- de Paula Castro, Thiago Luiz;
- Miyoshi, Anderson;
- Silva, Artur;
- Kumar, Anil;
- Misra, Amarendra Narayan
Publication type:
Article
Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2673-7
By:
- Batista Mariano, Diego César;
- de Jesus Sousa, Thiago;
- Pereira, Felipe Luiz;
- Aburjaile, Flávia;
- Barh, Debmalya;
- Rocha, Flávia;
- Pinto, Anne Cybelle;
- Hassan, Syed Shah;
- Luerce Saraiva, Tessália Diniz;
- Dorella, Fernanda Alves;
- de Carvalho, Alex Fiorini;
- Gomes Leal, Carlos Augusto;
- Pereira Figueiredo, Henrique César;
- Silva, Artur;
- Jucá Ramos, Rommel Thiago;
- Carvalho Azevedo, Vasco Ariston
Publication type:
Article
SATIN: a micro and mini satellite mining tool of total genome and coding regions with analysis of perfect repeats polymorphism in coding regions.
Published in:
BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05842-2
By:
- Dantas, Carlos Willian Dias;
- da Costa Neto, Sebastião Rodrigues;
- Alves, Sandy Ingrid Aguiar;
- da Costa Pinheiro, Kenny;
- De Los Santos, Edian Franklin Franco;
- Ramos, Rommel Thiago Jucá
Publication type:
Article
Genomic analyses of a novel bioemulsifier-producing Psychrobacillus strain isolated from soil of King George Island, Antarctica.
Published in:
Polar Biology, 2022, v. 45, n. 4, p. 691, doi. 10.1007/s00300-022-03028-1
By:
- da Silva, Mariana Barbalho Farias;
- da Mota, Fabio Faria;
- Jurelevicius, Diogo;
- de Carvalho Azevedo, Vasco Ariston;
- da Costa, Mateus Matiuzzi;
- Góes-Neto, Aristóteles;
- Ramos, Rommel Thiago Jucá;
- de Castro Soares, Siomar;
- Rosado, Alexandre Soares;
- Seldin, Lucy
Publication type:
Article
Artificial neural networks for short-term forecasting of cases, deaths, and hospital beds occupancy in the COVID-19 pandemic at the Brazilian Amazon.
Published in:
PLoS ONE, 2021, v. 16, n. 3, p. 1, doi. 10.1371/journal.pone.0248161
By:
- Braga, Marcus de Barros;
- Fernandes, Rafael da Silva;
- Souza, Gilberto Nerino de;
- Rocha, Jonas Elias Castro da;
- Dolácio, Cícero Jorge Fonseca;
- Tavares, Ivaldo da Silva;
- Pinheiro, Raphael Rodrigues;
- Noronha, Fernando Napoleão;
- Rodrigues, Luana Lorena Silva;
- Ramos, Rommel Thiago Jucá;
- Carneiro, Adriana Ribeiro;
- Brito, Silvana Rossy de;
- Diniz, Hugo Alex Carneiro;
- Botelho, Marcel do Nascimento;
- Vallinoto, Antonio Carlos Rosário
Publication type:
Article
Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment.
Published in:
Microorganisms, 2022, v. 10, n. 8, p. 1673, doi. 10.3390/microorganisms10081673
By:
- Schultz, Júnia;
- Parise, Mariana Teixeira Dornelles;
- Parise, Doglas;
- Medeiros, Laenne G.;
- Sousa, Thiago J.;
- Kato, Rodrigo B.;
- Uetanabaro, Ana Paula Trovatti;
- Araújo, Fabrício;
- Ramos, Rommel Thiago Jucá;
- de Castro Soares, Siomar;
- Brenig, Bertram;
- de Carvalho Azevedo, Vasco Ariston;
- Góes-Neto, Aristóteles;
- Rosado, Alexandre S.
Publication type:
Article
Bacteriocin Producing Streptococcus agalactiae Strains Isolated from Bovine Mastitis in Brazil.
Published in:
Microorganisms, 2022, v. 10, n. 3, p. 588, doi. 10.3390/microorganisms10030588
By:
- Vidal Amaral, João Ricardo;
- Jucá Ramos, Rommel Thiago;
- Almeida Araújo, Fabrício;
- Bentes Kato, Rodrigo;
- Figueira Aburjaile, Flávia;
- de Castro Soares, Siomar;
- Góes-Neto, Aristóteles;
- Matiuzzi da Costa, Mateus;
- Azevedo, Vasco;
- Brenig, Bertram;
- Soares de Oliveira, Selma;
- Soares Rosado, Alexandre
Publication type:
Article
HIF-1α Is Associated with Resistance to Hypoxia-Induced Apoptosis in Ameloblastoma.
Published in:
International Journal of Dentistry, 2021, p. 1, doi. 10.1155/2021/3060375
By:
- Valladares, Katherine Julissa Palma;
- Balbinot, Karolyny Martins;
- Lopes de Moraes, Antonia Taiane;
- Kataoka, Maria Sueli da Silva;
- Ramos, Aline Maria Pereira Cruz;
- Ramos, Rommel Thiago Jucá;
- da Silva, Artur Luiz da Costa;
- Mesquita, Ricardo Alves;
- Normando, David;
- Alves Júnior, Sérgio de Melo;
- Pinheiro, João de Jesus Viana
Publication type:
Article
Beta-Lactam Susceptibility Profiles of Bacteria Isolated from the Ozama River in Santo Domingo, Dominican Republic.
Published in:
Sustainability (2071-1050), 2023, v. 15, n. 6, p. 5109, doi. 10.3390/su15065109
By:
- Bonnelly, Roberto;
- Queiroz Cavalcante, Ana Lidia;
- Calderon, Victor V.;
- Baraúna, Rafael Azevedo;
- Jucá Ramos, Rommel Thiago;
- Rodríguez-Rodríguez, Yaset;
- De Francisco, Luis Enrique Rodríguez;
- Maroto Martín, Luis Orlando;
- Perdomo, Omar Paino;
- Franco De Los Santos, Edian Franklin
Publication type:
Article
Comparative genetic and pathogenic approaches of Escherichia coli isolated simultaneously from pyometra and urine of bitches.
Published in:
Veterinary Research Communications, 2024, v. 48, n. 3, p. 1755, doi. 10.1007/s11259-024-10355-7
By:
- Lopes, Cassiane Elisabete;
- Weyh, Tainara Soares;
- Moni, Camila Azevedo;
- Dias, Maria Eduarda;
- Gomes, Tania Aparecida Tardelli;
- da Costa, Mateus Matiuzzi;
- Ramos, Rommel Thiago Jucá;
- Góes-Neto, Aristóteles;
- de Carvalho Azevedo, Vasco Ariston;
- Brenig, Bertram;
- Siqueira, Franciele Maboni
Publication type:
Article
Immunoexpression of stem cell markers SOX-2, NANOG AND OCT4 in ameloblastoma.
Published in:
PeerJ, 2023, p. 1, doi. 10.7717/peerj.14349
By:
- Martins Balbinot, Karolyny;
- Almeida Loureiro, Felippe José;
- Pereira Chemelo, Giordanna;
- Alves Mesquita, Ricardo;
- Pereira Cruz Ramos, Aline Maria;
- Jucá Ramos, Rommel Thiago;
- da Costa da Silva, Artur Luiz;
- Fernandes de Menezes, Sílvio Augusto;
- da Silva Kataoka, Maria Sueli;
- Alves Junior, Sergio de Melo;
- Viana Pinheiro, João de Jesus
Publication type:
Article
Metallothionein Expression and its Influence on the In Vitro Biological Behavior of Mucoepidermoid Carcinoma.
Published in:
Cells (2073-4409), 2020, v. 9, n. 1, p. 1, doi. 10.3390/cells9010157
By:
- Habib Souza Aquime, João Rafael;
- D’Araújo Pinto Zampieri, Lara Carolina;
- da Silva Kataoka, Maria Sueli;
- Bailão Ribeiro, Nelson Antonio;
- Gastaldoni Jaeger, Ruy;
- Luiz da Silva, Artur;
- Jucá Ramos, Rommel Thiago;
- de Melo Alves Júnior, Sérgio;
- de Jesus Viana Pinheiro, João
Publication type:
Article
Conserved host–pathogen PPIs.
Published in:
Integrative Biology, 2013, v. 5, n. 3, p. 495, doi. 10.1039/c2ib20206a
By:
- Barh, Debmalya;
- Gupta, Krishnakant;
- Jain, Neha;
- Khatri, Gourav;
- León-Sicairos, Nidia;
- Canizalez-Roman, Adrian;
- Tiwari, Sandeep;
- Verma, Ankit;
- Rahangdale, Sachin;
- Shah Hassan, Syed;
- Rodrigues dos Santos, Anderson;
- Ali, Amjad;
- Carlos Guimarães, Luis;
- Thiago Jucá Ramos, Rommel;
- Devarapalli, Pratap;
- Barve, Neha;
- Bakhtiar, Marriam;
- Kumavath, Ranjith;
- Ghosh, Preetam;
- Miyoshi, Anderson
Publication type:
Article
EasySSR: a user-friendly web application with full command-line features for large-scale batch microsatellite mining and samples comparison.
Published in:
Frontiers in Genetics, 2023, p. 1, doi. 10.3389/fgene.2023.1228552
By:
- Aguiar Alves, Sandy Ingrid;
- Costa Ferreira, Victor Benedito;
- Dias Dantas, Carlos Willian;
- da Costa da Silva, Artur Luiz;
- Jucá Ramos, Rommel Thiago
Publication type:
Article
Genome informatics and vaccine targets in Corynebacterium urealyticum using two whole genomes, comparative genomics, and reverse vaccinology.
Published in:
BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S5-S7
By:
- Guimarães, Luis Carlos;
- de Castro Soares, Siomar;
- Trost, Eva;
- Blom, Jochen;
- Jucá Ramos, Rommel Thiago;
- Silva, Artur;
- Barh, Debmalya;
- Azevedo, Vasco
Publication type:
Article

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