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Unraveling the genomic underpinnings of unbalanced MYC break-apart FISH results using whole genome sequencing analysis.
Published in:
Blood Cancer Journal, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41408-023-00967-8
By:
- Gagnon, Marie-France;
- Penheiter, Alan R.;
- Harris, Faye;
- Sadeghian, Dorsay;
- Johnson, Sarah H.;
- Karagouga, Giannoula;
- McCune, Alexa;
- Zepeda-Mendoza, Cinthya;
- Greipp, Patricia T.;
- Xu, Xinjie;
- Ketterling, Rhett P.;
- McPhail, Ellen D.;
- King, Rebecca L.;
- Peterson, Jess F.;
- Vasmatzis, George;
- Baughn, Linda B.
Publication type:
Article
Holistic Pinniped Welfare Index (HPWI): A Tool to Assess Welfare in Pinnipeds.
Published in:
Aquatic Mammals, 2024, v. 50, n. 3, p. 223, doi. 10.1578/AM.50.3.2024.223
By:
- Zaias, Julia;
- Johnson, Sarah H.;
- Laine, Analeigh;
- Maribona, Nikki;
- Mooney, Allison;
- Nobles, Lauryn;
- Noel, Ana;
- Orengo, Alannah S.;
- Pittsinger, Ryan;
- Wagler, Brienna;
- Wallace, Shannon;
- Weber, Kristen
Publication type:
Article
Novel USP25::PDGFRA Gene Fusion in a 78 Year Old Patient with a Myeloid Neoplasm.
Published in:
Laboratory Medicine, 2022, v. 53, n. 5, p. e134, doi. 10.1093/labmed/lmac010
By:
- Dalland, Joanna C;
- Blackburn, Patrick R;
- Reichard, Kaaren K;
- Johnson, Sarah H;
- Smadbeck, James B;
- Vasmatzis, George;
- Hoppman, Nicole L;
- Xu, Xinjie;
- Greipp, Patricia T;
- Baughn, Linda B;
- Peterson, Jess F
Publication type:
Article
Chromoanasynthesis is a common mechanism that leads to ERBB2 amplifications in a cohort of early stage HER2<sup>+</sup> breast cancer samples.
Published in:
2018
By:
- Vasmatzis, George;
- Wang, Xue;
- Smadbeck, James B;
- Murphy, Stephen J;
- Geiersbach, Katherine B;
- Johnson, Sarah H;
- Gaitatzes, Athanasios G;
- Asmann, Yan W;
- Kosari, Farhad;
- Borad, Mitesh J;
- Serie, Daniel J;
- McLaughlin, Sarah A;
- Kachergus, Jennifer M;
- Necela, Brian M;
- Aubrey Thompson, E;
- Thompson, E Aubrey
Publication type:
journal article
Complex balanced intrachromosomal rearrangement involving PITX2 identified as a cause of Axenfeld‐Rieger Syndrome.
Published in:
American Journal of Medical Genetics. Part A, 2024, v. 194, n. 5, p. 1, doi. 10.1002/ajmg.a.63542
By:
- Farris, Joseph;
- Khanna, Cheryl;
- Smadbeck, James B.;
- Johnson, Sarah H.;
- Bothun, Erick;
- Kaplan, Tyler;
- Hoffman, Francis;
- Polonis, Katarzyna;
- Oliver, Gavin;
- Reis, Linda M.;
- Semina, Elena V.;
- Rust, Laura;
- Hoppman, Nicole L.;
- Vasmatzis, George;
- Marcou, Cherisse A.;
- Schimmenti, Lisa A.;
- Klee, Eric W.
Publication type:
Article
Copy number variant analysis using genome‐wide mate‐pair sequencing.
Published in:
Genes, Chromosomes & Cancer, 2018, v. 57, n. 9, p. 459, doi. 10.1002/gcc.5
By:
- Smadbeck, James B.;
- Johnson, Sarah H.;
- Smoley, Stephanie A.;
- Gaitatzes, Athanasios;
- Drucker, Travis M.;
- Zenka, Roman M.;
- Kosari, Farhad;
- Murphy, Stephen J.;
- Hoppman, Nicole;
- Aypar, Umut;
- Sukov, William R.;
- Jenkins, Robert B.;
- Kearney, Hutton M.;
- Feldman, Andrew L.;
- Vasmatzis, George
Publication type:
Article
Identification and Development of a Lung Adenocarcinoma PDX Model With STRN-ALK Fusion.
Published in:
2019
By:
- Ren, Hongzheng;
- Hou, Xiaonan;
- Eiken, Patrick W.;
- Zhang, Jin;
- Pierson, Karlyn E.;
- Nair, Asha A.;
- Davila, Jaime I.;
- Kovarikova, Helena;
- Jang, Jin Sung;
- Johnson, Sarah H.;
- Molina, Julian R.;
- Marks, Randolph S.;
- Yang, Ping;
- Yi, Joanne E.;
- Mansfield, Aaron S.;
- Jen, Jin
Publication type:
journal article
Quantification of Somatic Chromosomal Rearrangements in Circulating Cell-Free DNA from Ovarian Cancers.
Published in:
Scientific Reports, 2016, p. 29831, doi. 10.1038/srep29831
By:
- Harris, Faye R.;
- Kovtun, Irina V.;
- Smadbeck, James;
- Multinu, Francesco;
- Jatoi, Aminah;
- Kosari, Farhad;
- Kalli, Kimberly R.;
- Murphy, Stephen J.;
- Halling, Geoffrey C.;
- Johnson, Sarah H.;
- Liu, Minetta C.;
- Mariani, Andrea;
- Vasmatzis, George
Publication type:
Article
Topoisomerase 2 Alpha Cooperates with Androgen Receptor to Contribute to Prostate Cancer Progression.
Published in:
PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0142327
By:
- Schaefer-Klein, J. L.;
- Murphy, Stephen J.;
- Johnson, Sarah H.;
- Vasmatzis, George;
- Kovtun, Irina V.
Publication type:
Article
Cover Image.
Published in:
2019
By:
- Aypar, Umut;
- Smoley, Stephanie A.;
- Pitel, Beth A.;
- Pearce, Kathryn E.;
- Zenka, Roman M.;
- Vasmatzis, George;
- Johnson, Sarah H.;
- Smadbeck, James B.;
- Peterson, Jess F.;
- Geiersbach, Katherine B.;
- Van Dyke, Daniel L.;
- Thorland, Erik C.;
- Jenkins, Robert B.;
- Ketterling, Rhett P.;
- Greipp, Patricia T.;
- Kearney, Hutton M.;
- Hoppman, Nicole L.;
- Baughn, Linda B.
Publication type:
Cover Art
Mate pair sequencing improves detection of genomic abnormalities in acute myeloid leukemia.
Published in:
European Journal of Haematology, 2019, v. 102, n. 1, p. 87, doi. 10.1111/ejh.13179
By:
- Aypar, Umut;
- Smoley, Stephanie A.;
- Pitel, Beth A.;
- Pearce, Kathryn E.;
- Zenka, Roman M.;
- Vasmatzis, George;
- Johnson, Sarah H.;
- Smadbeck, James B.;
- Peterson, Jess F.;
- Geiersbach, Katherine B.;
- Van Dyke, Daniel L.;
- Thorland, Erik C.;
- Jenkins, Robert B.;
- Ketterling, Rhett P.;
- Greipp, Patricia T.;
- Kearney, Hutton M.;
- Hoppman, Nicole L.;
- Baughn, Linda B.
Publication type:
Article
Theragnostic chromosomal rearrangements in treatment‐naive pancreatic ductal adenocarcinomas obtained via endoscopic ultrasound.
Published in:
Journal of Cellular & Molecular Medicine, 2021, v. 25, n. 8, p. 4110, doi. 10.1111/jcmm.16381
By:
- Murphy, Stephen J.;
- Levy, Michael J.;
- Smadbeck, James B.;
- Karagouga, Giannoula;
- McCune, Alexa F.;
- Harris, Faye R.;
- Udell, Julia B.;
- Johnson, Sarah H.;
- Kerr, Sarah E.;
- Cheville, John C.;
- Kipp, Benjamin R.;
- Vasmatzis, George;
- Gleeson, Ferga C.
Publication type:
Article
Prenatal characterization of a novel inverted SMAD2 duplication by mate pair sequencing in a fetus with dextrocardia.
Published in:
Clinical Case Reports, 2021, v. 9, n. 2, p. 769, doi. 10.1002/ccr3.3608
By:
- Zepeda‐Mendoza, Cinthya J.;
- Essendrup, Anna;
- Smoley, Stephanie A.;
- Johnson, Sarah H.;
- Hoppman, Nicole L;
- Vasmatzis, George;
- Jackson, Daniel L.;
- Kearney, Hutton M.;
- Baughn, Linda B.
Publication type:
Article
Common fragile sites (CFS) and extremely large CFS genes are targets for human papillomavirus integrations and chromosome rearrangements in oropharyngeal squamous cell carcinoma.
Published in:
Genes, Chromosomes & Cancer, 2017, v. 56, n. 1, p. 59, doi. 10.1002/gcc.22415
By:
- Gao, Ge;
- Johnson, Sarah H;
- Vasmatzis, George;
- Pauley, Christina E;
- Tombers, Nicole M.;
- Kasperbauer, Jan L;
- Smith, David I.
Publication type:
Article
Novel TRAF1-ALK fusion identified by deep RNA sequencing of anaplastic large cell lymphoma.
Published in:
Genes, Chromosomes & Cancer, 2013, v. 52, n. 11, p. 1097, doi. 10.1002/gcc.22104
By:
- Feldman, Andrew L.;
- Vasmatzis, George;
- Asmann, Yan W.;
- Davila, Jaime;
- Middha, Sumit;
- Eckloff, Bruce W.;
- Johnson, Sarah H.;
- Porcher, Julie C.;
- Ansell, Stephen M.;
- Caride, Ariel
Publication type:
Article
Identification of submicroscopic genetic changes and precise breakpoint mapping in myelofibrosis using high resolution mate-pair sequencing.
Published in:
American Journal of Hematology, 2013, v. 88, n. 9, p. 741, doi. 10.1002/ajh.23495
By:
- Lasho, Terra;
- Johnson, Sarah H.;
- Smith, David I.;
- Crispino, John D.;
- Pardanani, Animesh;
- Vasmatzis, George;
- Tefferi, Ayalew
Publication type:
Article
Shared and unique genomic structural variants of different histological components within testicular germ cell tumours identified with mate pair sequencing.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39956-y
By:
- Bryce, Alan H.;
- Egan, Jan B.;
- Smadbeck, James B.;
- Johnson, Sarah H.;
- Murphy, Stephen J.;
- Harris, Faye R.;
- Halling, Geoffrey C.;
- Terra, Simone B. S. P.;
- Cheville, John;
- Pagliaro, Lance;
- Leibovich, Brad;
- Costello, Brian A.;
- Vasmatzis, George
Publication type:
Article
Genome U-Plot: a whole genome visualization.
Published in:
Bioinformatics, 2018, v. 34, n. 10, p. 1629, doi. 10.1093/bioinformatics/btx829
By:
- Gaitatzes, Athanasios;
- Johnson, Sarah H;
- Smadbeck, James B;
- Vasmatzis, George
Publication type:
Article
BIMA V3: an aligner customized for mate pair library sequencing.
Published in:
Bioinformatics, 2014, v. 30, n. 11, p. 1627, doi. 10.1093/bioinformatics/btu078
By:
- Drucker, Travis M.;
- Johnson, Sarah H.;
- Murphy, Stephen J.;
- Cradic, Kendall W.;
- Therneau, Terry M.;
- Vasmatzis, George
Publication type:
Article
Mate Pair Sequencing of Whole-Genome-Amplified DNA Following Laser Capture Microdissection of Prostate Cancer.
Published in:
DNA Research, 2012, v. 19, n. 5, p. 395, doi. 10.1093/dnares/dss021
By:
- Murphy, Stephen J.;
- Cheville, John C.;
- Zarei, Shabnam;
- Johnson, Sarah H.;
- Sikkink, Robert A.;
- Kosari, Farhad;
- Feldman, Andrew L.;
- Eckloff, Bruce W.;
- Karnes, R. Jeffrey;
- Vasmatzis, George
Publication type:
Article

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