Found: 21
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The HADDOCK2.4 web server for integrative modeling of biomolecular complexes.
- Published in:
- Nature Protocols, 2024, v. 19, n. 11, p. 3219, doi. 10.1038/s41596-024-01011-0
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- Article
pyDockSAXS: protein--protein complex structure by SAXS and computational docking.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W356, doi. 10.1093/nar/gkv368
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- Article
Blind prediction of interfacial water positions in CAPRI.
- Published in:
- Proteins, 2014, v. 82, n. 4, p. 620, doi. 10.1002/prot.24439
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- Article
Expanding the frontiers of protein-protein modeling: From docking and scoring to binding affinity predictions and other challenges.
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- Proteins, 2013, v. 81, n. 12, p. 2192, doi. 10.1002/prot.24387
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- Article
A protein-RNA docking benchmark (II): Extended set from experimental and homology modeling data.
- Published in:
- Proteins, 2012, v. 80, n. 7, p. 1872, doi. 10.1002/prot.24075
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- Article
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study.
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- Proteomics, 2023, v. 23, n. 17, p. 1, doi. 10.1002/pmic.202200323
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- Article
The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W298, doi. 10.1093/nar/gkad327
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- Article
Towards design of drugs and delivery systems with the Martini coarse-grained model.
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- QRB Discovery, 2022, v. 3, p. 1, doi. 10.1017/qrd.2022.16
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- Article
PDB‐tools web: A user‐friendly interface for the manipulation of PDB files.
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- Proteins, 2021, v. 89, n. 3, p. 330, doi. 10.1002/prot.26018
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- Article
Integrative modeling of protein‐protein interactions with pyDock for the new docking challenges.
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- Proteins, 2020, v. 88, n. 8, p. 999, doi. 10.1002/prot.25858
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- Article
pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
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- Proteins, 2017, v. 85, n. 3, p. 487, doi. 10.1002/prot.25184
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- Article
proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking.
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- Bioinformatics, 2020, v. 36, n. 20, p. 5107, doi. 10.1093/bioinformatics/btaa644
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- Article
pyDockEneRes: per-residue decomposition of protein–protein docking energy.
- Published in:
- Bioinformatics, 2020, v. 36, n. 7, p. 2284, doi. 10.1093/bioinformatics/btz884
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- Article
LightDock goes information-driven.
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- Bioinformatics, 2020, v. 36, n. 3, p. 950, doi. 10.1093/bioinformatics/btz642
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- Article
PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes.
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- Bioinformatics, 2019, v. 35, n. 22, p. 4821, doi. 10.1093/bioinformatics/btz437
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- Article
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation.
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- Bioinformatics, 2019, v. 35, n. 3, p. 462, doi. 10.1093/bioinformatics/bty635
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- Article
LightDock: a new multi-scale approach to protein--protein docking.
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- Bioinformatics, 2018, v. 34, n. 1, p. 49, doi. 10.1093/bioinformatics/btx555
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- Article
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.
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- Bioinformatics, 2017, v. 33, n. 12, p. 1806, doi. 10.1093/bioinformatics/btx068
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- Article
CCharPPI web server: computational characterization of protein–protein interactions from structure.
- Published in:
- Bioinformatics, 2015, v. 31, n. 1, p. 123, doi. 10.1093/bioinformatics/btu594
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- Publication type:
- Article
pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring.
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- Bioinformatics, 2013, v. 29, n. 13, p. 1698
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- Article
Integrative modeling of membrane-associated protein assemblies.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-20076-5
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- Article