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A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses.
Published in:
Microbiome, 2015, v. 3, p. 1, doi. 10.1186/s40168-015-0129-y
By:
- Weinmaier, Thomas;
- Probst, Alexander J.;
- La Duc, Myron T.;
- Ciobanu, Doina;
- Jan-Fang Cheng;
- Ivanova, Natalia;
- Rattei, Thomas;
- Vaishampayan, Parag
Publication type:
Article
Biochemical characterization of Fsa16295Glu from "Fervidibacter sacchari," the first hyperthermophilic GH50 with γ-1,3-endoglucanase activity and founding member of the subfamily GH50_3.
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1355444
By:
- Covington, Jonathan K.;
- Torosian, Nicole;
- Cook, Allison M.;
- Palmer, Marike;
- Bryan, Scott G.;
- Nou, Nancy O.;
- Mewalal, Ritesh;
- Harmon-Smith, Miranda;
- Blaby, Ian K.;
- Jan-Fang Cheng;
- Hess, Matthias;
- Brumm, Phillip J.;
- Singh, Nitin K.;
- Venkateswaran, Kasthuri;
- Hedlund, Brian P.
Publication type:
Article
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0287-z
By:
- Sevim, Volkan;
- Lee, Juna;
- Egan, Robert;
- Clum, Alicia;
- Hundley, Hope;
- Lee, Janey;
- Everroad, R. Craig;
- Detweiler, Angela M.;
- Bebout, Brad M.;
- Pett-Ridge, Jennifer;
- Göker, Markus;
- Murray, Alison E.;
- Lindemann, Stephen R.;
- Klenk, Hans-Peter;
- O'Malley, Ronan;
- Zane, Matthew;
- Cheng, Jan-Fang;
- Copeland, Alex;
- Daum, Christopher;
- Singer, Esther
Publication type:
Article
Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits.
Published in:
BioEnergy Research, 2020, v. 13, n. 1, p. 79, doi. 10.1007/s12155-020-10090-2
By:
- Bahri, Bochra A.;
- Daverdin, Guillaume;
- Xu, Xiangyang;
- Cheng, Jan-Fang;
- Barry, Kerrie W.;
- Brummer, E. Charles;
- Missaoui, Ali;
- Devos, Katrien M.
Publication type:
Article
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
Published in:
Nature Genetics, 2011, v. 43, n. 5, p. 476, doi. 10.1038/ng.807
By:
- Hu, Tina T.;
- Pattyn, Pedro;
- Bakker, Erica G.;
- Cao, Jun;
- Jan-Fang Cheng;
- Clark, Richard M.;
- Fahlgren, Noah;
- Fawcett, Jeffrey A.;
- Grimwood, Jane;
- Gundlach, Heidrun;
- Haberer, Georg;
- Hollister, Jesse D.;
- Ossowski, Stephan;
- Ottilar, Robert P.;
- Salamov, Asaf A.;
- Schneeberger, Korbinian;
- Spannagl, Manuel;
- Xi Wang;
- Liang Yang;
- Nasrallah, Mikhail E.
Publication type:
Article
Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome.
Published in:
Nature Genetics, 2005, v. 37, n. 1, p. 31, doi. 10.1038/ng1491
By:
- Horike, Shin-ichi;
- Cai, Shutao;
- Miyano, Masaru;
- Cheng, Jan-Fang;
- Kohwi-Shigematsu, Terumi
Publication type:
Article
Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (<italic>Panicum virgatum</italic> L.).
Published in:
BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1193-2
By:
- Bahri, Bochra A.;
- Daverdin, Guillaume;
- Xu, Xiangyang;
- Cheng, Jan-Fang;
- Barry, Kerrie W.;
- Brummer, E. Charles;
- Devos, Katrien M.
Publication type:
Article
Building a custom high-throughput platform at the Joint Genome Institute for DNA construct design and assembly—present and future challenges.
Published in:
Synthetic Biology (23977000), 2020, v. 5, n. 1, p. 1, doi. 10.1093/synbio/ysaa023
By:
- Blaby, Ian K;
- Cheng, Jan-Fang
Publication type:
Article
Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.
Published in:
Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x
By:
- Shetty, Ameesha R.;
- de Gannes, Vidya;
- Obi, Chioma C.;
- Lucas, Susan;
- Lapidus, Alla;
- Jan-Fang Cheng;
- Goodwin, Lynne A.;
- Pitluck, Samuel;
- Peters, Linda;
- Mikhailova, Natalia;
- Teshima, Hazuki;
- Han, Cliff;
- Tapia, Roxanne;
- Land, Miriam;
- Hauser, Loren J.;
- Kyrpides, Nikos;
- Ivanova, Natalia;
- Pagani, Ioanna;
- Chain, Patrick S. G.;
- Denef, Vincent J
Publication type:
Article
High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India.
Published in:
Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
By:
- Mukherjee, Supratim;
- Lapidus, Alla;
- Shapiro, Nicole;
- Jan-Fang Cheng;
- Han, James;
- Reddy, T. B. K.;
- Huntemann, Marcel;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Amy Chen;
- Palaniappan, Krishna;
- Spring, Stefan;
- Göker, Markus;
- Markowitz, Victor;
- Woyke, Tanja;
- Tindall, Brian J.;
- Klenk, Hans-Peter;
- Kyrpides, Nikos C.;
- Pati, Amrita
Publication type:
Article
Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383
By:
- Göker, Markus;
- Spring, Stefan;
- Scheuner, Carmen;
- Anderson, Iain;
- Zeytun, Ahmet;
- Nolan, Matt;
- Lucas, Susan;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita
Publication type:
Article
Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
By:
- Göker, Markus;
- Lu, Megan;
- Fiebig, Anne;
- Nolan, Matt;
- Lapidus, Alla;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701) and emended description of the genus Thermanaerovibrio.
Published in:
Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 57, doi. 10.4056/sigs.4237901
By:
- Palaniappan, Krishna;
- Meier-Kolthoff, Jan;
- Teshima, Hazuki;
- Nolan, Matt;
- Lapidus, Alla;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Rohde, Manfred
Publication type:
Article
Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.
Published in:
Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 83, doi. 10.4056/sigs.4338002
By:
- Anderson, Iain;
- Teshima, Huzuki;
- Nolan, Matt;
- Lapidus, Alla;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna;
- Land, Miriam
Publication type:
Article
Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055).
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 177, doi. 10.4056/sigs.3637201
By:
- Huntemann, Marcel;
- Stackebrandt, Erko;
- Held, Brittany;
- Nolan, Matt;
- Lucas, Susan;
- Hammon, Nancy;
- Deshpande, Shweta;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mavromatis, Konstantinos;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna;
- Land, Miriam
Publication type:
Article
Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H), and emendation of the species Turneriella parva.
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 228, doi. 10.4056/sigs.3617113
By:
- Stackebrandt, Erko;
- Chertkov, Olga;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Hammon, Nancy;
- Deshpande, Shweta;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mavromatis, Konstantinos;
- Mikhailova, Natalia;
- Huntemann, Marcel;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Complete genome sequence of Coriobacterium glomerans type strain (PW2) from the midgut of Pyrrhocoris apterus L. (red soldier bug).
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 15, doi. 10.4056/sigs.3507020
By:
- Stackebrandt, Erko;
- Zeytun, Ahmet;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Hammon, Nancy;
- Deshpande, Shweta;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mavromatis, Konstantinos;
- Mikhailova, Natalia;
- Huntemann, Marcel;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692) from the alkaline Lake Magadi in the East African Rift.
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 165, doi. 10.4056/sigs.3607108
By:
- Liolos, Konstantinos;
- Abt, Birte;
- Scheuner, Carmen;
- Teshima, Hazuki;
- Held, Brittany;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Deshpande, Shweta;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mavromatis, Konstantinos;
- Mikhailova, Natalia;
- Huntemann, Marcel;
- Pati, Amrita;
- Chen, Amy
Publication type:
Article
Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437).
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 26, doi. 10.4056/sigs.3527032
By:
- Mavromatis, Konstantinos;
- Stackebrandt, Erko;
- Munk, Christine;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Hammon, Nancy;
- Deshpande, Shweta;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Huntemann, Marcel;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5).
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 37, doi. 10.4056/sigs.3537045
By:
- Stackebrandt, Erko;
- Chertkov, Olga;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Han, Cliff;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Bruce, David;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Huntemann, Marcel;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA).
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 47, doi. 10.4056/sigs.3547050
By:
- Mavromatis, Konstantinos;
- Stackebrandt, Erko;
- Held, Brittany;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Hammon, Nancy;
- Deshpande, Shweta;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Huntemann, Marcel;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 88, doi. 10.4056/sigs.3096473
By:
- Abt, Birte;
- Göker, Markus;
- Scheuner, Carmen;
- Han, Cliff;
- Lu, Megan;
- Misra, Monica;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Hammon, Nancy;
- Deshpande, Shweta;
- Cheng, Jan-Fang;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mavromatis, Konstantinos;
- Mikhailova, Natalia
Publication type:
Article
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659
By:
- Spring, Stefan;
- Visser, Michael;
- Lu, Megan;
- Copeland, Alex;
- Lapidus, Alla;
- Lucas, Susan;
- Jan-Fang Cheng;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne A.;
- Pitluck, Sam;
- Ivanova, Natalia;
- Land, Miriam;
- Hauser, Loren;
- Larimer, Frank;
- Rohde, Manfred;
- Göker, Markus;
- Detter, John C.;
- Kyrpides, Nikos C.;
- Woyke, Tanja
Publication type:
Article
Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 210, doi. 10.4056/sigs.3117229
By:
- Anderson, Iain;
- Munk, Christine;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Tice, Hope;
- Del Rio, Tijana Glavina;
- Jan-Fang Cheng;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna;
- Land, Miriam
Publication type:
Article
Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801T).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 120, doi. 10.4056/sigs.3296896
By:
- Riedel, Thomas;
- Held, Brittany;
- Nolan, Matt;
- Lucas, Susan;
- Lapidus, Alla;
- Tice, Hope;
- Del Rio, Tijana Glavina;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne A.;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 107, doi. 10.4056/sigs.3216895
By:
- Riedel, Thomas;
- Held, Brittany;
- Nolan, Matt;
- Lucas, Susan;
- Lapidus, Alla;
- Tice, Hope;
- Del Rio, Tijana Glavina;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne A.;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 22, doi. 10.4056/sigs.2966299
By:
- Neupane, Saraswoti;
- Finlay, Roger D.;
- Kyrpides, Nikos C.;
- Goodwin, Lynne;
- Alström, Sadhna;
- Lucas, Susan;
- Land, Miriam;
- Han, James;
- Lapidus, Alla;
- Jan-Fang Cheng;
- Bruce, David;
- Pitluck, Sam;
- Peters, Lin;
- Ovchinnikova, Galina;
- Held, Brittany;
- Cliff Han;
- Detter, John C.;
- Tapia, Roxanne;
- Hauser, Loren;
- Ivanova, Natalia
Publication type:
Article
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47486-z
By:
- Grosjean, Nicolas;
- Yee, Estella F.;
- Kumaran, Desigan;
- Chopra, Kriti;
- Abernathy, Macon;
- Biswas, Sandeep;
- Byrnes, James;
- Kreitler, Dale F.;
- Cheng, Jan-Fang;
- Ghosh, Agnidipta;
- Almo, Steven C.;
- Iwai, Masakazu;
- Niyogi, Krishna K.;
- Pakrasi, Himadri B.;
- Sarangi, Ritimukta;
- van Dam, Hubertus;
- Yang, Lin;
- Blaby, Ian K.;
- Blaby-Haas, Crysten E.
Publication type:
Article
Generation of Long Insert Pairs Using a Cre-LoxP Inverse PCR Approach.
Published in:
PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029437
By:
- Ze Peng;
- Zhiying Zhao;
- Nandita Nath;
- Froula, Jeff L.;
- Alicia Clum;
- Tao Zhang;
- Jan-fang Cheng;
- Copeland, Alex C.;
- Pennacchio, Len A.;
- Feng Chen
Publication type:
Article
Decontamination of MDA Reagents for Single Cell Whole Genome Amplification.
Published in:
PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0026161
By:
- Woyke, Tanja;
- Sczyrba, Alexander;
- Lee, Janey;
- Rinke, Christian;
- Tighe, Damon;
- Clingenpeel, Scott;
- Malmstrom, Rex;
- Stepanauskas, Ramunas;
- Cheng, Jan-Fang
Publication type:
Article
One Bacterial Cell, One Complete Genome.
Published in:
PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0010314
By:
- Woyke, Tanja;
- Tighe, Damon;
- Mavromatis, Konstantinos;
- Clum, Alicia;
- Copeland, Alex;
- Schackwitz, Wendy;
- Lapidus, Alla;
- Dongying Wu;
- McCutcheon, John P.;
- McDonald, Bradon R.;
- Moran, Nancy A.;
- Bristow, James;
- Jan-Fang Cheng
Publication type:
Article
Assembling the Marine Metagenome, One Cell at a Time.
Published in:
PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005299
By:
- Woyke, Tanja;
- Xie, Gary;
- Copeland, Alex;
- González, José M.;
- Han, Cliff;
- Kiss, Hajnalka;
- Saw, Jimmy H.;
- Senin, Pavel;
- Chi Yang;
- Chatterji, Sourav;
- Jan-Fang Cheng;
- Eisen, Jonathan A.;
- Sieracki, Michael E.;
- Stepanauskas, Ramunas
Publication type:
Article
Physical mapping of the human ATX1 homologue (HAH1) to the critical region of the 5q- syndrome within 5q32, and immediately adjacent to the SPARC gene.
Published in:
Human Genetics, 2000, v. 106, n. 1, p. 127, doi. 10.1007/s004390051020
By:
- Boultwood, Jacqueline;
- Strickson, Amanda J.;
- Jabs, Ethylin W.;
- Jan-Fang Cheng;
- Fidler, Carrie;
- Wainscoat, James S.
Publication type:
Article
Genome characterization of bile-isolated Shewanella algae ACCC.
Published in:
Gut Pathogens, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13099-018-0267-4
By:
- Tseng, Shu-Ying;
- Tung, Kwong-Chung;
- Cheng, Jan-Fang;
- Lee, Yi-Hsuan;
- Wu, Zong-Yen;
- Hong, Yu-Kai;
- Chen, Shi-Yu;
- Huang, Yao-Ting;
- Liu, Po-Yu
Publication type:
Article
Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems.
Published in:
PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0241867
By:
- Liu, Hualan;
- Robinson, David S.;
- Wu, Zong-Yen;
- Kuo, Rita;
- Yoshikuni, Yasuo;
- Blaby, Ian K.;
- Cheng, Jan-Fang
Publication type:
Article
Cover Image, Volume 66, Issue 6.
Published in:
Zoonoses & Public Health, 2019, v. 66, n. 6, p. i, doi. 10.1111/zph.12640
By:
- Huang, Yao‐Ting;
- Cheng, Jan‐Fang;
- Wu, Zong‐Yen;
- Tung, Kwong‐Chung;
- Chen, Ying‐Ju;
- Hong, Yu‐Kai;
- Chen, Shi‐Yu;
- Liu, Po‐Yu
Publication type:
Article
Genomic and phylogenetic characterization of Shewanella xiamenensis isolated from giant grouper (Epinephelus lanceolatus) in Taiwan.
Published in:
Zoonoses & Public Health, 2019, v. 66, n. 6, p. 679, doi. 10.1111/zph.12580
By:
- Huang, Yao‐Ting;
- Cheng, Jan‐Fang;
- Wu, Zong‐Yen;
- Tung, Kwong‐Chung;
- Chen, Ying‐Ju;
- Hong, Yu‐Kai;
- Chen, Shi‐Yu;
- Liu, Po‐Yu
Publication type:
Article
A genome-wide screen identifies a single β-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins.
Published in:
BMC Genomics, 2004, v. 5, p. 56, doi. 10.1186/1471-2164-5-56
By:
- Yanjing Xiao;
- Hughes, Austin L.;
- Junko Ando;
- Matsuda, Yoichi;
- Jan-Fang Cheng;
- Skinner-Noble, Donald;
- Guolong Zhang
Publication type:
Article
Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution.
Published in:
Molecular Biology & Evolution, 2018, v. 35, n. 8, p. 1968, doi. 10.1093/molbev/msy102
By:
- Kuang, Meihua Christina;
- Kominek, Jacek;
- Alexander, William G;
- Cheng, Jan-Fang;
- Wrobel, Russell L;
- Hittinger, Chris Todd
Publication type:
Article
Genomic Structure, Gene Expression, and Promoter Analysis of Human Multidrug Resistance-Associated Protein 7.
Published in:
Journal of Biomedical Science, 2003, v. 10, n. 1, p. 98, doi. 10.1007/BF02256002
By:
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- Ming-shi Chang, George C.;
- Jan-fang Cheng, George C.;
- Jin-ding Huang, George C.
Publication type:
Article
An integrated workflow for phenazine-modifying enzyme characterization.
Published in:
Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 7, p. 567, doi. 10.1007/s10295-018-2025-5
By:
- Coates, R. Cameron;
- Bowen, Benjamin P.;
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- Thomashow, Linda;
- Hadjithomas, Michalis;
- Zhao, Zhiying;
- Ke, Jing;
- Silva, Leslie;
- Louie, Katherine;
- Wang, Gaoyan;
- Robinson, David;
- Tarver, Angela;
- Hamilton, Matthew;
- Lubbe, Andrea;
- Feltcher, Meghan;
- Dangl, Jeffery L.;
- Pati, Amrita;
- Weller, David;
- Northen, Trent R.;
- Cheng, Jan-Fang
Publication type:
Article
Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium.
Published in:
Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01560-8
By:
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- La Clair, James J.;
- Tyml, Tomáš;
- Doud, Devin;
- Schulz, Frederik;
- Piquer-Esteban, Samuel;
- Porcel Sanchis, Dafne;
- Osborn, Andrew;
- Robinson, David;
- Louie, Katherine B.;
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- Bowers, Robert M.;
- Lee, Janey;
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- Díaz-Villanueva, Wladimiro;
- Stepanauskas, Ramunas;
- Gosliner, Terrence;
- Date, Shailesh V.;
- Northen, Trent R.;
- Cheng, Jan-Fang
Publication type:
Article
An Independent Genome Duplication Inferred from Hox Paralogs in the American Paddlefish—A Representative Basal Ray-Finned Fish and Important Comparative Reference.
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Genome Biology & Evolution, 2012, v. 4, n. 9, p. 937, doi. 10.1093/gbe/evs067
By:
- Crow, Karen D.;
- Smith, Christopher D.;
- Cheng, Jan-Fang;
- Wagner, Günter P.;
- Amemiya, Chris T.
Publication type:
Article
Genome complexity in the coelacanth is reflected in its adaptive immune system.
Published in:
Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2014, v. 322, n. 6, p. 438, doi. 10.1002/jez.b.22558
By:
- Saha, Nil Ratan;
- Ota, Tatsuya;
- Litman, Gary W.;
- Hansen, John;
- Parra, Zuly;
- Hsu, Ellen;
- Buonocore, Francesco;
- Canapa, Adriana;
- Cheng, Jan‐Fang;
- Amemiya, Chris T.
Publication type:
Article
Chimeric Plastid Proteome in the Florida "Red Tide" Dinoflagellate Karenia brevis.
Published in:
Molecular Biology & Evolution, 2006, v. 23, n. 11, p. 2026
By:
- Nosenko, Tetyana;
- Lidie, Kristy L.;
- Van Dolah, Frances M.;
- Lindquist, Erika;
- Cheng, Jan-Fang;
- Bhattacharya, Debashish
Publication type:
Article
Genome Analysis of Multidrug-Resistant Shewanella algae Isolated From Human Soft Tissue Sample.
Published in:
Frontiers in Pharmacology, 2018, p. 1, doi. 10.3389/fphar.2018.00419
By:
- Huang, Yao-Ting;
- Tang, Yu-Yu;
- Cheng, Jan-Fang;
- Wu, Zong-Yen;
- Mao, Yan-Chiao;
- Liu, Po-Yu
Publication type:
Article
A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides.
Published in:
Microbial Cell Factories, 2019, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12934-019-1167-0
By:
- Nora, Luísa Czamanski;
- Wehrs, Maren;
- Kim, Joonhoon;
- Cheng, Jan-Fang;
- Tarver, Angela;
- Simmons, Blake A.;
- Magnuson, Jon;
- Harmon-Smith, Miranda;
- Silva-Rocha, Rafael;
- Gladden, John M.;
- Mukhopadhyay, Aindrila;
- Skerker, Jeffrey M.;
- Kirby, James
Publication type:
Article
Comparative genomics reveals functional transcriptional control sequences in the Prop1 gene.
Published in:
Mammalian Genome, 2007, v. 18, n. 6/7, p. 521, doi. 10.1007/s00335-007-9008-6
By:
- Ward, Robert;
- Davis, Shannon;
- Cho, MinChul;
- Esposito, Constance;
- Lyons, Robert;
- Cheng, Jan-Fang;
- Rubin, Edward;
- Rhodes, Simon;
- Raetzman, Lori;
- Smith, Timothy;
- Camper, Sally
Publication type:
Article
Characterization of the dogAgoutigene and anonagoutimutation in German Shepherd Dogs.
Published in:
Mammalian Genome, 2004, v. 15, n. 10, p. 798, doi. 10.1007/s00335-004-2377-1
By:
- Kerns, Julie;
- Newton, J.;
- Berryere, Tom;
- Rubin, Edward;
- Cheng, Jan-Fang;
- Schmutz, Sheila;
- Barsh, Gregory
Publication type:
Article
Insights into the phylogeny and coding potential of microbial dark matter.
Published in:
Nature, 2013, v. 499, n. 7459, p. 431, doi. 10.1038/nature12352
By:
- Rinke, Christian;
- Schwientek, Patrick;
- Sczyrba, Alexander;
- Ivanova, Natalia N.;
- Anderson, Iain J.;
- Cheng, Jan-Fang;
- Darling, Aaron;
- Malfatti, Stephanie;
- Swan, Brandon K.;
- Gies, Esther A.;
- Dodsworth, Jeremy A.;
- Hedlund, Brian P.;
- Tsiamis, George;
- Sievert, Stefan M.;
- Liu, Wen-Tso;
- Eisen, Jonathan A.;
- Hallam, Steven J.;
- Kyrpides, Nikos C.;
- Stepanauskas, Ramunas;
- Rubin, Edward M.
Publication type:
Article

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