Found: 14

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  • The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression.

    Published in:
    Nature Communications, 2016, v. 7, n. 9, p. 12791, doi. 10.1038/ncomms12791
    By:
    • Niknafs, Yashar S.;
    • Han, Sumin;
    • Ma, Teng;
    • Speers, Corey;
    • Zhang, Chao;
    • Wilder-Romans, Kari;
    • Iyer, Matthew K.;
    • Pitchiaya, Sethuramasundaram;
    • Malik, Rohit;
    • Hosono, Yasuyuki;
    • Prensner, John R.;
    • Poliakov, Anton;
    • Singhal, Udit;
    • Xiao, Lanbo;
    • Kregel, Steven;
    • Siebenaler, Ronald F.;
    • Zhao, Shuang G.;
    • Uhl, Michael;
    • Gawronski, Alexander;
    • Hayes, Daniel F.
    Publication type:
    Article

  • Oculus: faster sequence alignment by streaming read compression.

    Published in:
    BMC Bioinformatics, 2012, v. 13, n. 1, p. 297, doi. 10.1186/1471-2105-13-297
    By:
    • Veeneman, Brendan A.;
    • Iyer, Matthew K.;
    • Chinnaiyan, Arul M.
    Publication type:
    Article

  • ASO Visual Abstract: Timing of Adjuvant Immunotherapy in Stage III Melanoma, Does It Matter?

    Published in:
    2023
    By:
    • Rhodin, Kristen E.;
    • Jung, Sin-Ho;
    • Elleson, Kelly;
    • DePalo, Danielle;
    • Straker, Richard;
    • McKinley, Sophia;
    • Beekman, Kate;
    • Parker, Lily;
    • Chen, Suephy;
    • Iyer, Matthew K.;
    • Salama, April K. S.;
    • Bartlett, Edmund;
    • Karakousis, Giorgos;
    • Zager, Jonathan S.;
    • Tyler, Douglas S.;
    • Beasley, Georgia M.
    Publication type:
    Abstract

  • The landscape of long noncoding RNAs in the human transcriptome.

    Published in:
    Nature Genetics, 2015, v. 47, n. 3, p. 199, doi. 10.1038/ng.3192
    By:
    • Iyer, Matthew K;
    • Chinnaiyan, Arul M;
    • Niknafs, Yashar S;
    • Malik, Rohit;
    • Sahu, Anirban;
    • Dhanasekaran, Saravana M;
    • Singhal, Udit;
    • Cao, Xuhong;
    • Hosono, Yasuyuki;
    • Barrette, Terrence R;
    • Prensner, John R;
    • Poliakov, Anton;
    • Wu, Yi-Mi;
    • Robinson, Dan R;
    • Evans, Joseph R;
    • Zhao, Shuang;
    • Beer, David G;
    • Feng, Felix Y;
    • Iyer, Hariharan K
    Publication type:
    Article

  • The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex.

    Published in:
    Nature Genetics, 2013, v. 45, n. 11, p. 1392, doi. 10.1038/ng.2771
    By:
    • Prensner, John R;
    • Iyer, Matthew K;
    • Sahu, Anirban;
    • Asangani, Irfan A;
    • Cao, Qi;
    • Patel, Lalit;
    • Vergara, Ismael A;
    • Davicioni, Elai;
    • Erho, Nicholas;
    • Ghadessi, Mercedeh;
    • Jenkins, Robert B;
    • Triche, Timothy J;
    • Malik, Rohit;
    • Bedenis, Rachel;
    • McGregor, Natalie;
    • Ma, Teng;
    • Chen, Wei;
    • Han, Sumin;
    • Jing, Xiaojun;
    • Cao, Xuhong
    Publication type:
    Article

  • Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing.

    Published in:
    Nature Genetics, 2013, v. 45, n. 2, p. 180, doi. 10.1038/ng.2509
    By:
    • Robinson, Dan R;
    • Wu, Yi-Mi;
    • Kalyana-Sundaram, Shanker;
    • Cao, Xuhong;
    • Lonigro, Robert J;
    • Sung, Yun-Shao;
    • Chen, Chun-Liang;
    • Zhang, Lei;
    • Wang, Rui;
    • Su, Fengyun;
    • Iyer, Matthew K;
    • Roychowdhury, Sameek;
    • Siddiqui, Javed;
    • Pienta, Kenneth J;
    • Kunju, Lakshmi P;
    • Talpaz, Moshe;
    • Mosquera, Juan Miguel;
    • Singer, Samuel;
    • Schuetze, Scott M;
    • Antonescu, Cristina R
    Publication type:
    Article

  • Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.

    Published in:
    Nature Biotechnology, 2011, v. 29, n. 8, p. 742, doi. 10.1038/nbt.1914
    By:
    • Prensner, John R;
    • Iyer, Matthew K;
    • Balbin, O Alejandro;
    • Dhanasekaran, Saravana M;
    • Cao, Qi;
    • Brenner, J Chad;
    • Laxman, Bharathi;
    • Asangani, Irfan A;
    • Grasso, Catherine S;
    • Kominsky, Hal D;
    • Cao, Xuhong;
    • Jing, Xiaojun;
    • Wang, Xiaoju;
    • Siddiqui, Javed;
    • Wei, John T;
    • Robinson, Daniel;
    • Iyer, Hari K;
    • Palanisamy, Nallasivam;
    • Maher, Christopher A;
    • Chinnaiyan, Arul M
    Publication type:
    Article

  • RNA-Seq unleashed.

    Published in:
    Nature Biotechnology, 2011, v. 29, n. 7, p. 599, doi. 10.1038/nbt.1915
    By:
    • Iyer, Matthew K;
    • Chinnaiyan, Arul M
    Publication type:
    Article

  • Prostate cancer cell-stromal cell crosstalk via FGFR1 mediates antitumor activity of dovitinib in bone metastases.

    Published in:
    Science Translational Medicine, 2014, v. 6, n. 252, p. 1, doi. 10.1126/scitranslmed.3009332
    By:
    • Xinhai Wan;
    • Corn, Paul G.;
    • Jun Yang;
    • Palanisamy, Nallasivam;
    • Starbuck, Michael W.;
    • Efstathiou, Eleni;
    • Tapia, Elsa M. Li Ning;
    • Zurita, Amado J.;
    • Aparicio, Ana;
    • Ravoori, Murali K.;
    • Vazquez, Elba S.;
    • Robinson, Dan R.;
    • Yi-Mi Wu;
    • Xuhong Cao;
    • Iyer, Matthew K.;
    • McKeehan, Wallace;
    • Kundra, Vikas;
    • Fen Wang;
    • Troncoso, Patricia;
    • Chinnaiyan, Arul M.
    Publication type:
    Article

  • Personalized Oncology Through Integrative High-Throughput Sequencing: A Pilot Study.

    Published in:
    Science Translational Medicine, 2011, v. 3, n. 111, p. 1, doi. 10.1126/scitranslmed.3003161
    By:
    • Roychowdhury, Sameek;
    • Iyer, Matthew K.;
    • Robinson, Dan R.;
    • Lonigro, Robert J.;
    • Yi-Mi Wu;
    • Xuhong Cao;
    • Kalyana-Sundaram, Shanker;
    • Lee Sam;
    • Balbin, O. Alejandro;
    • Quist, Michael J.;
    • Barrette, Terrence;
    • Everett, Jessica;
    • Siddiqui, Javed;
    • Kunju, Lakshmi P.;
    • Navone, Nora;
    • Araujo, John C.;
    • Troncoso, Patricia;
    • Logothetis, Christopher J.;
    • Innis, Jeffrey W.;
    • Smith, David C.
    Publication type:
    Article

  • ChimeraScan: a tool for identifying chimeric transcription in sequencing data.

    Published in:
    Bioinformatics, 2011, v. 27, n. 20, p. 2903, doi. 10.1093/bioinformatics/btr467
    By:
    • Iyer, Matthew K.;
    • Chinnaiyan, Arul M.;
    • Maher, Christopher A.
    Publication type:
    Article

  • Targeting the MLL complex in castration-resistant prostate cancer.

    Published in:
    Nature Medicine, 2015, v. 21, n. 4, p. 344, doi. 10.1038/nm.3830
    By:
    • Malik, Rohit;
    • Khan, Amjad P;
    • Asangani, Irfan A;
    • Cieślik, Marcin;
    • Prensner, John R;
    • Wang, Xiaoju;
    • Iyer, Matthew K;
    • Jiang, Xia;
    • Borkin, Dmitry;
    • Escara-Wilke, June;
    • Stender, Rachell;
    • Wu, Yi-Mi;
    • Niknafs, Yashar S;
    • Jing, Xiaojun;
    • Qiao, Yuanyuan;
    • Palanisamy, Nallasivam;
    • Kunju, Lakshmi P;
    • Krishnamurthy, Pranathi M;
    • Yocum, Anastasia K;
    • Mellacheruvu, Dattatreya
    Publication type:
    Article

  • Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 24, doi. 10.1186/s13059-014-0570-4
    By:
    • Tsoi, Lam C.;
    • Iyer, Matthew K.;
    • Stuart, Philip E.;
    • Swindell, William R.;
    • Gudjonsson, Johann E.;
    • Tejasvi, Trilokraj;
    • Sarkar, Mrinal K.;
    • Li, Bingshan;
    • Ding, Jun;
    • Voorhees, John J.;
    • Kang, Hyun M.;
    • Nair, Rajan P.;
    • Chinnaiyan, Arul M.;
    • Abecasis, Goncalo R.;
    • Elder, James T.
    Publication type:
    Article

  • Insights into Chinese prostate cancer with RNA-seq.

    Published in:
    Cell Research, 2012, v. 22, n. 5, p. 786, doi. 10.1038/cr.2012.50
    By:
    • Sahu, Anirban;
    • Iyer, Matthew K;
    • Chinnaiyan, Arul M
    Publication type:
    Article