Found: 31
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Drug-Resistant Tuberculosis in Pet Ring-Tailed Lemur, Madagascar.
- Published in:
- 2021
- By:
- Publication type:
- journal article
SNP-IT Tool for Identifying Subspecies and Associated Lineages of Mycobacterium tuberculosis Complex.
- Published in:
- 2019
- By:
- Publication type:
- journal article
Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis.
- Published in:
- 2014
- By:
- Publication type:
- journal article
Rapid Whole-Genome Sequencing for Surveillance of Salmonella enterica Serovar Enteritidis.
- Published in:
- Emerging Infectious Diseases, 2014, v. 20, n. 8, p. 1306, doi. 10.3201/eid2008.131399
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- Publication type:
- Article
The global distribution and spread of the mobilized colistin resistance gene mcr-1.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03205-z
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- Publication type:
- Article
GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00953-4
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- Publication type:
- Article
Mapping copy number variation by population-scale genome sequencing.
- Published in:
- Nature, 2011, v. 470, n. 7332, p. 59, doi. 10.1038/nature09708
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- Publication type:
- Article
A Bayesian Approach to Inferring the Phylogenetic Structure of Communities from Metagenomic Data.
- Published in:
- Genetics, 2014, v. 197, n. 3, p. 925, doi. 10.1534/genetics.114.161299
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- Publication type:
- Article
Improved genome inference in the MHC using a population reference graph.
- Published in:
- Nature Genetics, 2015, v. 47, n. 6, p. 682, doi. 10.1038/ng.3257
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- Publication type:
- Article
Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications.
- Published in:
- Nature Genetics, 2014, v. 46, n. 8, p. 912, doi. 10.1038/ng.3036
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- Publication type:
- Article
De novo assembly and genotyping of variants using colored de Bruijn graphs.
- Published in:
- Nature Genetics, 2012, v. 44, n. 2, p. 226, doi. 10.1038/ng.1028
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- Publication type:
- Article
High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005151
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- Publication type:
- Article
Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004824
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- Publication type:
- Article
Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences.
- Published in:
- PLoS Biology, 2021, v. 19, n. 11, p. 1, doi. 10.1371/journal.pbio.3001421
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- Publication type:
- Article
Severe infections emerge from commensal bacteria by adaptive evolution.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.30637
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- Publication type:
- Article
ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.
- Published in:
- Bioinformatics, 2022, v. 38, n. 12, p. 3291, doi. 10.1093/bioinformatics/btac311
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- Publication type:
- Article
Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome.
- Published in:
- Bioinformatics, 2022, v. 38, n. 7, p. 1781, doi. 10.1093/bioinformatics/btac023
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- Publication type:
- Article
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.
- Published in:
- Bioinformatics, 2020, v. 36, p. i177, doi. 10.1093/bioinformatics/btaa487
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- Publication type:
- Article
Integrating long-range connectivity information into de Bruijn graphs.
- Published in:
- Bioinformatics, 2018, v. 34, n. 15, p. 2556, doi. 10.1093/bioinformatics/bty157
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- Publication type:
- Article
Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 10, p. 1666, doi. 10.1093/bioinformatics/btx801
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- Publication type:
- Article
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22700-4
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- Publication type:
- Article
Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060058
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- Publication type:
- Article
Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data.
- Published in:
- Molecular Ecology, 2013, v. 22, n. 11, p. 3141, doi. 10.1111/mec.12242
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- Publication type:
- Article
Role for gene conversion in the evolution of cell-surface antigens of the malaria parasite Plasmodium falciparum.
- Published in:
- PLoS Biology, 2024, v. 22, n. 3, p. 1, doi. 10.1371/journal.pbio.3002507
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- Publication type:
- Article
Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02714-x
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- Publication type:
- Article
Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02473-1
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- Publication type:
- Article
Gramtools enables multiscale variation analysis with genome graphs.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02474-0
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- Publication type:
- Article
A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics.
- Published in:
- PLoS Biology, 2022, v. 20, n. 8, p. 1, doi. 10.1371/journal.pbio.3001721
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- Publication type:
- Article
Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms.
- Published in:
- PLoS Biology, 2022, v. 20, n. 8, p. 1, doi. 10.1371/journal.pbio.3001755
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- Publication type:
- Article
High-throughput microbial population genomics using the Cortex variation assembler.
- Published in:
- Bioinformatics, 2013, v. 29, n. 2, p. 275, doi. 10.1093/bioinformatics/bts673
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- Publication type:
- Article
Ultrafast search of all deposited bacterial and viral genomic data.
- Published in:
- Nature Biotechnology, 2019, v. 37, n. 2, p. 152, doi. 10.1038/s41587-018-0010-1
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- Publication type:
- Article