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Genomic Analysis of Fluoroquinolone- and Tetracycline-Resistant Campylobacter jejuni Sequence Type 6964 in Humans and Poultry, New Zealand, 2014-2016.
Published in:
2019
By:
- French, Nigel P.;
- Ji Zhang;
- Carter, Glen P.;
- Midwinter, Anne C.;
- Biggs, Patrick J.;
- Dyet, Kristin;
- Gilpin, Brent J.;
- Ingle, Danielle J.;
- Mulqueen, Kerry;
- Rogers, Lynn E.;
- Wilkinson, David A.;
- Greening, Sabrina S.;
- Muellner, Petra;
- Fayaz, Ahmed;
- Williamson, Deborah A.;
- Zhang, Ji
Publication type:
journal article
The evolution and international spread of extensively drug resistant Shigella sonnei.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37672-w
By:
- Mason, Lewis C. E.;
- Greig, David R.;
- Cowley, Lauren A.;
- Partridge, Sally R.;
- Martinez, Elena;
- Blackwell, Grace A.;
- Chong, Charlotte E.;
- De Silva, P. Malaka;
- Bengtsson, Rebecca J.;
- Draper, Jenny L.;
- Ginn, Andrew N.;
- Sandaradura, Indy;
- Sim, Eby M.;
- Iredell, Jonathan R.;
- Sintchenko, Vitali;
- Ingle, Danielle J.;
- Howden, Benjamin P.;
- Lefèvre, Sophie;
- Njamkepo, Elisabeth;
- Weill, François-Xavier
Publication type:
Article
Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei.
Published in:
2023
By:
- Mason, Lewis C. E.;
- Greig, David R.;
- Cowley, Lauren A.;
- Partridge, Sally R.;
- Martinez, Elena;
- Blackwell, Grace A.;
- Chong, Charlotte E.;
- De Silva, P. Malaka;
- Bengtsson, Rebecca J.;
- Draper, Jenny L.;
- Ginn, Andrew N.;
- Sandaradura, Indy;
- Sim, Eby M.;
- Iredell, Jonathan R.;
- Sintchenko, Vitali;
- Ingle, Danielle J.;
- Howden, Benjamin P.;
- Lefèvre, Sophie;
- Njamkepo, Elisabeth;
- Weill, François-Xavier
Publication type:
Correction Notice
The evolution and international spread of extensively drug resistant Shigella sonnei.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37672-w
By:
- Mason, Lewis C. E.;
- Greig, David R.;
- Cowley, Lauren A.;
- Partridge, Sally R.;
- Martinez, Elena;
- Blackwell, Grace A.;
- Chong, Charlotte E.;
- De Silva, P. Malaka;
- Bengtsson, Rebecca J.;
- Draper, Jenny L.;
- Ginn, Andrew N.;
- Sandaradura, Indy;
- Sim, Eby M.;
- Iredell, Jonathan R.;
- Sintchenko, Vitali;
- Ingle, Danielle J.;
- Howden, Benjamin P.;
- Lefèvre, Sophie;
- Njamkepo, Elisabeth;
- Weill, François-Xavier
Publication type:
Article
The evolution and international spread of extensively drug resistant Shigella sonnei.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37672-w
By:
- Mason, Lewis C. E.;
- Greig, David R.;
- Cowley, Lauren A.;
- Partridge, Sally R.;
- Martinez, Elena;
- Blackwell, Grace A.;
- Chong, Charlotte E.;
- De Silva, P. Malaka;
- Bengtsson, Rebecca J.;
- Draper, Jenny L.;
- Ginn, Andrew N.;
- Sandaradura, Indy;
- Sim, Eby M.;
- Iredell, Jonathan R.;
- Sintchenko, Vitali;
- Ingle, Danielle J.;
- Howden, Benjamin P.;
- Lefèvre, Sophie;
- Njampeko, Elisabeth;
- Weill, François-Xavier
Publication type:
Article
GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07019-6
By:
- Wan, Yu;
- Wick, Ryan R.;
- Zobel, Justin;
- Ingle, Danielle J.;
- Inouye, Michael;
- Holt, Kathryn E.
Publication type:
Article
Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?
Published in:
Frontiers in Cellular & Infection Microbiology, 2016, v. 6, p. 1, doi. 10.3389/fcimb.2016.00141
By:
- Robins-Browne, Roy M.;
- Holt, Kathryn E.;
- Ingle, Danielle J.;
- Hocking, Dianna M.;
- Ji Yang;
- Tauschek, Marija
Publication type:
Article
Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25073-w
By:
- Ingle, Danielle J.;
- Ambrose, Rebecca L.;
- Baines, Sarah L.;
- Duchene, Sebastian;
- Gonçalves da Silva, Anders;
- Lee, Darren Y. J.;
- Jones, Miriam;
- Valcanis, Mary;
- Taiaroa, George;
- Ballard, Susan A.;
- Kirk, Martyn D.;
- Howden, Benjamin P.;
- Pearson, Jaclyn S.;
- Williamson, Deborah A.
Publication type:
Article
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22700-4
By:
- Hawkey, Jane;
- Paranagama, Kalani;
- Baker, Kate S.;
- Bengtsson, Rebecca J.;
- Weill, François-Xavier;
- Thomson, Nicholas R.;
- Baker, Stephen;
- Cerdeira, Louise;
- Iqbal, Zamin;
- Hunt, Martin;
- Ingle, Danielle J.;
- Dallman, Timothy J.;
- Jenkins, Claire;
- Williamson, Deborah A.;
- Holt, Kathryn E.
Publication type:
Article
Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12053-4
By:
- Williamson, Deborah A.;
- Chow, Eric P. F.;
- Gorrie, Claire L.;
- Seemann, Torsten;
- Ingle, Danielle J.;
- Higgins, Nasra;
- Easton, Marion;
- Taiaroa, George;
- Grad, Yonatan H.;
- Kwong, Jason C.;
- Fairley, Christopher K.;
- Chen, Marcus Y.;
- Howden, Benjamin P.
Publication type:
Article
Campylobacter jejuni ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America.
Published in:
Zoonoses & Public Health, 2021, v. 68, n. 6, p. 638, doi. 10.1111/zph.12853
By:
- Wallace, Rhiannon L.;
- Cribb, Danielle M.;
- Bulach, Dieter M.;
- Ingle, Danielle J.;
- Joensen, Katrine G.;
- Nielsen, Eva Møller;
- Leekitcharoenphon, Pimlapas;
- Stingl, Kerstin;
- Kirk, Martyn D.
Publication type:
Article
Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers.
Published in:
PLoS Neglected Tropical Diseases, 2019, v. 13, n. 9, p. 1, doi. 10.1371/journal.pntd.0007620
By:
- Ingle, Danielle J.;
- Nair, Satheesh;
- Hartman, Hassan;
- Ashton, Philip M.;
- Dyson, Zoe A.;
- Day, Martin;
- Freedman, Joanne;
- Chattaway, Marie A.;
- Holt, Kathryn E.;
- Dallman, Timothy J.
Publication type:
Article
Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.
Published in:
Clinical Infectious Diseases, 2019, v. 69, n. 9, p. 1535, doi. 10.1093/cid/ciz005
By:
- Ingle, Danielle J;
- Easton, Marion;
- Valcanis, Mary;
- Seemann, Torsten;
- Kwong, Jason C;
- Stephens, Nicola;
- Carter, Glen P;
- Silva, Anders Gonçalves da;
- Adamopoulos, James;
- Baines, Sarah L;
- Holt, Kathryn E;
- Chow, Eric P F;
- Fairley, Christopher K;
- Chen, Marcus Y;
- Kirk, Martyn D;
- Howden, Benjamin P;
- Williamson, Deborah A
Publication type:
Article
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.85867
By:
- Carey, Megan E.;
- Dyson, Zoe A.;
- Ingle, Danielle J.;
- Amir, Afreenish;
- Aworh, Mabel K.;
- Chattaway, Marie Anne;
- Ka Lip Chew;
- Crump, John A.;
- Feasey, Nicholas A.;
- Howden, Benjamin P.;
- Keddy, Karen H.;
- Maes, Mailis;
- Parry, Christopher M.;
- Van Puyvelde, Sandra;
- Webb, Hattie E.;
- Afolayan, Ayorinde Oluwatobiloba;
- Alexander, Anna P.;
- Anandan, Shalini;
- Andrews, Jason R.;
- Ashton, Philip M.
Publication type:
Article
Intratumoral presence of the genotoxic gut bacteria pks<sup>+</sup>E. coli, Enterotoxigenic Bacteroides fragilis, and Fusobacterium nucleatum and their association with clinicopathological and molecular features of colorectal cancer.
Published in:
British Journal of Cancer, 2024, v. 130, n. 5, p. 728, doi. 10.1038/s41416-023-02554-x
By:
- Joo, Jihoon E.;
- Chu, Yen Lin;
- Georgeson, Peter;
- Walker, Romy;
- Mahmood, Khalid;
- Clendenning, Mark;
- Meyers, Aaron L.;
- Como, Julia;
- Joseland, Sharelle;
- Preston, Susan G.;
- Diepenhorst, Natalie;
- Toner, Julie;
- Ingle, Danielle J.;
- Sherry, Norelle L.;
- Metz, Andrew;
- Lynch, Brigid M.;
- Milne, Roger L.;
- Southey, Melissa C.;
- Hopper, John L.;
- Win, Aung Ko
Publication type:
Article
Re-evaluation of a Neonatal Mouse Model of Infection With Enterotoxigenic Escherichia coli.
Published in:
Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.651488
By:
- Carroll, Carla J.;
- Hocking, Dianna M.;
- Azzopardi, Kristy I.;
- Praszkier, Judyta;
- Bennett-Wood, Vicki;
- Almeida, Kaylani;
- Ingle, Danielle J.;
- Baines, Sarah L.;
- Tauschek, Marija;
- Robins-Browne, Roy M.
Publication type:
Article
The changing epidemiology of shigellosis in Australia, 2001–2019.
Published in:
PLoS Neglected Tropical Diseases, 2023, v. 16, n. 3, p. 1, doi. 10.1371/journal.pntd.0010450
By:
- Ibrahim, Aaliya F.;
- Glass, Kathryn;
- Williamson, Deborah A.;
- Polkinghorne, Benjamin G.;
- Ingle, Danielle J.;
- Wright, Rose;
- Kirk, Martyn D.
Publication type:
Article
Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials.
Published in:
PLoS Neglected Tropical Diseases, 2022, v. 16, n. 3, p. 1, doi. 10.1371/journal.pntd.0010306
By:
- Dyson, Zoe Anne;
- Malau, Elisheba;
- Horwood, Paul F.;
- Ford, Rebecca;
- Siba, Valentine;
- Yoannes, Mition;
- Pomat, William;
- Passey, Megan;
- Judd, Louise M.;
- Ingle, Danielle J.;
- Williamson, Deborah A.;
- Dougan, Gordon;
- Greenhill, Andrew R.;
- Holt, Kathryn E.
Publication type:
Article

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