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The great hairball gambit.
- Published in:
- PLoS Genetics, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pgen.1008519
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- Publication type:
- Article
Dynamic post-translational modification profiling of Mycobacterium tuberculosisinfected primary macrophages.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.51461
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- Publication type:
- Article
Evidence for a common evolutionary rate in metazoan transcriptional networks.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.11615
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- Publication type:
- Article
Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33329-2
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- Publication type:
- Article
NeXO Web: the NeXO ontology database and visualization platform.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D1269, doi. 10.1093/nar/gkt1192
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- Publication type:
- Article
Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 20, p. e136, doi. 10.1093/nar/gkn619
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- Publication type:
- Article
CellCircuits: a database of protein network models.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d538, doi. 10.1093/nar/gkl937
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- Publication type:
- Article
Hierarchical association of COPD to principal genetic components of biological systems.
- Published in:
- PLoS ONE, 2023, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0286064
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- Publication type:
- Article
An open invitation to the Understudied Proteins Initiative.
- Published in:
- 2022
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- Publication type:
- Letter
Deep distributed computing to reconstruct extremely large lineage trees.
- Published in:
- Nature Biotechnology, 2022, v. 40, n. 4, p. 566, doi. 10.1038/s41587-021-01111-2
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- Publication type:
- Article
Molecular networks in context.
- Published in:
- Nature Biotechnology, 2015, v. 33, n. 7, p. 720, doi. 10.1038/nbt.3283
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- Publication type:
- Article
A gene ontology inferred from molecular networks.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 1, p. 38, doi. 10.1038/nbt.2463
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- Publication type:
- Article
POINT: Are we prepared for the future doctor visit?
- Published in:
- 2011
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- Publication type:
- Opinion
Modeling cellular machinery through biological network comparison.
- Published in:
- Nature Biotechnology, 2006, v. 24, n. 4, p. 427, doi. 10.1038/nbt1196
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- Publication type:
- Article
Systematic interpretation of genetic interactions using protein networks.
- Published in:
- Nature Biotechnology, 2005, v. 23, n. 5, p. 561, doi. 10.1038/nbt1096
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- Publication type:
- Article
Systems biology 101--what you need to know.
- Published in:
- 2004
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- Publication type:
- Editorial
Global architecture of genetic interactions on the protein network.
- Published in:
- Nature Biotechnology, 2003, v. 21, n. 5, p. 490, doi. 10.1038/nbt0503-490
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- Publication type:
- Article
Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.
- Published in:
- Nature Genetics, 2014, v. 46, n. 9, p. 939, doi. 10.1038/ng.3051
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- Publication type:
- Article
Leveraging models of cell regulation and GWAS data in integrative network-based association studies.
- Published in:
- Nature Genetics, 2012, v. 44, n. 8, p. 841, doi. 10.1038/ng.2355
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- Publication type:
- Article
Network-based stratification of tumor mutations.
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- Nature Methods, 2013, v. 10, n. 11, p. 1108, doi. 10.1038/nmeth.2651
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- Publication type:
- Article
A travel guide to Cytoscape plugins.
- Published in:
- Nature Methods, 2012, v. 9, n. 11, p. 1069, doi. 10.1038/nmeth.2212
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- Publication type:
- Article
A human MAP kinase interactome.
- Published in:
- Nature Methods, 2010, v. 7, n. 10, p. 801, doi. 10.1038/nmeth.1506
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- Publication type:
- Article
Cost-effective strategies for completing the interactome.
- Published in:
- Nature Methods, 2009, v. 6, n. 1, p. 55, doi. 10.1038/nmeth.1283
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- Publication type:
- Article
Multi-modal contrastive learning of subcellular organization using DICE.
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- Bioinformatics, 2024, v. 40, p. ii105, doi. 10.1093/bioinformatics/btae387
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- Publication type:
- Article
Representing mutations for predicting cancer drug response.
- Published in:
- Bioinformatics, 2024, v. 40, p. i160, doi. 10.1093/bioinformatics/btae209
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- Publication type:
- Article
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange.
- Published in:
- Bioinformatics, 2023, v. 39, n. 3, p. 1, doi. 10.1093/bioinformatics/btad118
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- Publication type:
- Article
Transcriptome profiling to identify genes involved in peroxisome assembly and function.
- Published in:
- Journal of Cell Biology, 2002, v. 158, n. 2, p. 259, doi. 10.1083/jcb.200204059
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- Publication type:
- Article
HiDeF: identifying persistent structures in multiscale 'omics data.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-020-02228-4
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- Publication type:
- Article
Analysis of Matched Tumor and Normal Profiles Reveals Common Transcriptional and Epigenetic Signals Shared across Cancer Types.
- Published in:
- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0142618
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- Publication type:
- Article
ERCC1 and TS Expression as Prognostic and Predictive Biomarkers in Metastatic Colon Cancer.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0126898
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- Publication type:
- Article
An Integrated Map of HIV-Human Protein Complexes that Facilitate Viral Infection.
- Published in:
- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096687
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- Publication type:
- Article
Rac2 Controls Tumor Growth, Metastasis and M1-M2 Macrophage Differentiation <i>In Vivo</i>.
- Published in:
- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095893
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- Publication type:
- Article
Development of Ultra-High-Density Screening Tools for Microbial “Omics”.
- Published in:
- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0085177
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- Publication type:
- Article
The Protein Architecture of Human Secretory Vesicles Reveals Differential Regulation of Signaling Molecule Secretion by Protein Kinases.
- Published in:
- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0041134
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- Publication type:
- Article
Integrative approaches for finding modular structure in biological networks.
- Published in:
- Nature Reviews Genetics, 2013, v. 14, n. 10, p. 719, doi. 10.1038/nrg3552
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- Publication type:
- Article
Integrating physical and genetic maps: from genomes to interaction networks.
- Published in:
- 2007
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- Publication type:
- journal article
In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells.
- Published in:
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-63943-7
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- Publication type:
- Article
Mitochondria, Energetics, Epigenetics, and Cellular Responses to Stress.
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- Environmental Health Perspectives, 2014, v. 122, n. 12, p. 1271, doi. 10.1289/ehp.1408418
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- Publication type:
- Article
An Integrated Systems Analysis Implicates EGR1 Downregulation in Simian Immunodeficiency Virus Encephalitis-Induced Neural Dysfunction.
- Published in:
- Journal of Neuroscience, 2009, v. 29, n. 40, p. 12467, doi. 10.1523/JNEUROSCI.3180-09.2009
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- Publication type:
- Article
DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1.
- Published in:
- EMBO Journal, 2012, v. 31, n. 7, p. 1811, doi. 10.1038/emboj.2012.28
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- Publication type:
- Article
Genetic dissection of complex traits using hierarchical biological knowledge.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009373
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- Publication type:
- Article
Functional genomic screen for modulators of ciliogenesis and cilium length.
- Published in:
- Nature, 2010, v. 464, n. 7291, p. 1048, doi. 10.1038/nature08895
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- Publication type:
- Article
Mapping Plant Interactomes Using Literature Curated and Predicted Protein–Protein Interaction Data Sets.
- Published in:
- Plant Cell, 2010, v. 22, n. 4, p. 997, doi. 10.1105/tpc.109.072736
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- Publication type:
- Article
VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w627, doi. 10.1093/nar/gki443
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- Publication type:
- Article
enoLOGOS: a versatile web tool for energy normalized sequence logos.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w389, doi. 10.1093/nar/gki439
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- Publication type:
- Article
PathBLAST: a tool for alignment of protein interaction networks.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w83, doi. 10.1093/nar/gkh411
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- Publication type:
- Article
Genome-wide dynamic evaluation of the UV-induced DNA damage response.
- Published in:
- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.120.401417
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- Publication type:
- Article
Rare variant phasing using paired tumor:normal sequence data.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2753-1
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- Publication type:
- Article
Differential network biology.
- Published in:
- Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2011.99
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- Publication type:
- Article
eQED: an efficient method for interpreting eQTL associations using protein networks.
- Published in:
- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.4
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- Publication type:
- Article