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A big data pipeline: Identifying dynamic gene regulatory networks from time-course Gene Expression Omnibus data with applications to influenza infection.
- Published in:
- 2018
- By:
- Publication type:
- journal article
Nurse-Administered Auricular Point Acupressure for Cancer-Related Pain.
- Published in:
- Integrative Cancer Therapies, 2023, v. 22, p. 1, doi. 10.1177/15347354231198086
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- Publication type:
- Article
Evaluation of Multitype Mathematical Models for CFSE-Labeling Experiment Data.
- Published in:
- Bulletin of Mathematical Biology, 2012, v. 74, n. 2, p. 300, doi. 10.1007/s11538-011-9668-y
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- Publication type:
- Article
MARS Approach for Global Sensitivity Analysis of Differential Equation Models with Applications to Dynamics of Influenza Infection.
- Published in:
- Bulletin of Mathematical Biology, 2012, v. 74, n. 1, p. 73, doi. 10.1007/s11538-011-9664-2
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- Publication type:
- Article
Modeling and Estimation of Kinetic Parameters and Replicative Fitness of HIV-1 from Flow-Cytometry-Based Growth Competition Experiments.
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- Bulletin of Mathematical Biology, 2008, v. 70, n. 6, p. 1749, doi. 10.1007/s11538-008-9323-4
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- Publication type:
- Article
Parameter Identifiability and Estimation of HIV/AIDS Dynamic Models.
- Published in:
- Bulletin of Mathematical Biology, 2008, v. 70, n. 3, p. 785, doi. 10.1007/s11538-007-9279-9
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- Publication type:
- Article
Adapting and Evaluating a Theory-Driven, Non-Pharmacological Intervention to Self-Manage Pain.
- Published in:
- Healthcare (2227-9032), 2024, v. 12, n. 10, p. 969, doi. 10.3390/healthcare12100969
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- Publication type:
- Article
High-Resolution Temporal Response Patterns to Influenza Vaccine Reveal a Distinct Human Plasma Cell Gene Signature.
- Published in:
- Scientific Reports, 2013, p. 1, doi. 10.1038/srep02327
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- Publication type:
- Article
High-dimensional linear state space models for dynamic microbial interaction networks.
- Published in:
- PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0187822
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- Publication type:
- Article
A National, Electronic Health Record–Based Study of Perinatal Hemorrhagic and Ischemic Stroke.
- Published in:
- Journal of Child Neurology, 2023, v. 38, n. 3/4, p. 206, doi. 10.1177/08830738231170739
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- Publication type:
- Article
Adaptation of Chagas Disease Screening Recommendations for a Community of At-risk HIV in the United States.
- Published in:
- Clinical Infectious Diseases, 2024, v. 78, n. 2, p. 453, doi. 10.1093/cid/ciad616
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- Publication type:
- Article
Steady-state pharmacokinetic interaction of modified-dose indinavir and rifabutin<sup>*</sup>.
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- Clinical Pharmacology & Therapeutics, 2003, v. 73, n. 3, p. 159, doi. 10.1067/mcp.2003.3
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- Publication type:
- Article
Missing time–dependent covariates in human immunodeficiency virus dynamic models.
- Published in:
- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2002, v. 51, n. 3, p. 297, doi. 10.1111/1467-9876.00270
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- Publication type:
- Article
The location of pain in cluster headache: Data from the International Cluster Headache Questionnaire.
- Published in:
- Headache: The Journal of Head & Face Pain, 2024, v. 64, n. 7, p. 783, doi. 10.1111/head.14766
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- Publication type:
- Article
Viral Decay Rates are Similar in HIV-infected Patients with and without TB Coinfection during Treatment with an Efavirenz-based Regimen.
- Published in:
- Clinical Infectious Diseases, 2011, v. 52, n. 4, p. 547, doi. 10.1093/cid/ciq196
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- Publication type:
- Article
Variable importance evaluation with personalized odds ratio for machine learning model interpretability with applications to electronic health records‐based mortality prediction.
- Published in:
- Statistics in Medicine, 2023, v. 42, n. 6, p. 761, doi. 10.1002/sim.9642
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- Publication type:
- Article
A novel approach for propensity score matching and stratification for multiple treatments: Application to an electronic health record-derived study.
- Published in:
- 2020
- By:
- Publication type:
- journal article
Independence screening for high dimensional nonlinear additive ODE models with applications to dynamic gene regulatory networks.
- Published in:
- 2018
- By:
- Publication type:
- journal article
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-336
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- Publication type:
- Article
The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-124
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- Publication type:
- Article
More powerful significant testing for time course gene expression data using functional principal component analysis approaches.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-6
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- Publication type:
- Article
vFitness: a web-based computing tool forimproving estimation of in vitro HIV-1fitness experiments.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 261, doi. 10.1186/1471-2105-11-261
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- Publication type:
- Article
Effect of reinforcement particles on cold-sprayed Al-based coatings.
- Published in:
- Surface Engineering, 2021, v. 37, n. 12, p. 1570, doi. 10.1080/02670844.2021.2014171
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- Publication type:
- Article
Scholarly recommendation systems: a literature survey.
- Published in:
- Knowledge & Information Systems, 2023, v. 65, n. 11, p. 4433, doi. 10.1007/s10115-023-01901-x
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- Publication type:
- Article
Hierarchical Bayesian inference for HIV dynamic differential equation models incorporating multiple treatment factors.
- Published in:
- Biometrical Journal, 2010, v. 52, n. 4, p. 470, doi. 10.1002/bimj.200900173
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- Publication type:
- Article
Comparison of Linear, Nonlinear and Semiparametric Mixed-effects Models for Estimating HIV Dynamic Parameters.
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- Biometrical Journal, 2004, v. 46, n. 2, p. 233
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- Publication type:
- Article
Design of Viral Dynamic Studies for Efficiently Assessing Potency of Anti-HIV Therapies in AIDS Clinical Trials.
- Published in:
- Biometrical Journal, 2002, v. 44, n. 2, p. 175, doi. 10.1002/1521-4036(200203)44:2<175::AID-BIMJ175>3.0.CO;2-3
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- Publication type:
- Article
Joint inference for nonlinear mixed-effects models and time to event at the presence of missing data.
- Published in:
- Biostatistics, 2008, v. 9, n. 2, p. 308
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- Publication type:
- Article
Assessing antiviral potency of anti-HIV therapies in vivo by comparing viral decay rates in viral dynamic models.
- Published in:
- Biostatistics, 2001, v. 2, n. 1, p. 13, doi. 10.1093/biostatistics/2.1.13
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- Publication type:
- Article
A note on conditional AIC for linear mixed-effects models.
- Published in:
- Biometrika, 2008, v. 95, n. 3, p. 773, doi. 10.1093/biomet/asn023
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- Publication type:
- Article
Machine learning prediction of the adverse outcome for nontraumatic subarachnoid hemorrhage patients.
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- Annals of Clinical & Translational Neurology, 2020, v. 7, n. 11, p. 2178, doi. 10.1002/acn3.51208
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- Publication type:
- Article
ImmuneData: an integrated data discovery system for immunology data repositories.
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- Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac003
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- Publication type:
- Article
An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries.
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- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa074
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- Publication type:
- Article
A content-based dataset recommendation system for researchers—a case study on Gene Expression Omnibus (GEO) repository.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa064
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- Publication type:
- Article
Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis.
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- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/bay145
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- Publication type:
- Article
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav095
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- Publication type:
- Article
Vasopressor treatment and mortality following nontraumatic subarachnoid hemorrhage: a nationwide electronic health record analysis.
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- Neurosurgical Focus, 2020, v. 48, n. 5, p. 1, doi. 10.3171/2020.2.FOCUS191002
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- Publication type:
- Article
A novel NIH research grant recommender using BERT.
- Published in:
- PLoS ONE, 2023, v. 17, n. 1, p. 1, doi. 10.1371/journal.pone.0278636
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- Publication type:
- Article
Characterization of Symptoms and Symptom Clusters for Type 2 Diabetes Using a Large Nationwide Electronic Health Record Database.
- Published in:
- Diabetes Spectrum, 2022, v. 35, n. 2, p. 159, doi. 10.2337/ds21-0064
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- Publication type:
- Article
Multi-scale agent-based modeling on melanoma and its related angiogenesis analysis.
- Published in:
- Theoretical Biology & Medical Modelling, 2013, v. 10, n. 1, p. 1, doi. 10.1186/1742-4682-10-41
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- Publication type:
- Article
Self-Guided Smartphone Application to Manage Chronic Musculoskeletal Pain: A Randomized, Controlled Pilot Trial.
- Published in:
- International Journal of Environmental Research & Public Health, 2022, v. 19, n. 22, p. 14875, doi. 10.3390/ijerph192214875
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- Publication type:
- Article
Designing acceptance sampling schemes for life testing with mixed censoring.
- Published in:
- Naval Research Logistics, 2004, v. 51, n. 4, p. 597, doi. 10.1002/nav.20012
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- Publication type:
- Article
Modeling the Dynamics and Migratory Pathways of Virus-Specific Antibody-Secreting Cell Populations in Primary Influenza Infection.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104781
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- Publication type:
- Article
Modeling Genome-Wide Dynamic Regulatory Network in Mouse Lungs with Influenza Infection Using High-Dimensional Ordinary Differential Equations.
- Published in:
- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0095276
- By:
- Publication type:
- Article
Increase in IFNγ<sup>−</sup>IL-2<sup>+</sup> Cells in Recent Human CD4 T Cell Responses to 2009 Pandemic H1N1 Influenza.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0057275
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- Publication type:
- Article
Numerical Discretization-Based Estimation Methods for Ordinary Differential Equation Models via Penalized Spline Smoothing with Applications in Biomedical Research.
- Published in:
- Biometrics, 2012, v. 68, n. 2, p. 344, doi. 10.1111/j.1541-0420.2012.01752.x
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- Publication type:
- Article
Mixed-Effects State-Space Models for Analysis of Longitudinal Dynamic Systems.
- Published in:
- Biometrics, 2011, v. 67, n. 2, p. 476, doi. 10.1111/j.1541-0420.2010.01485.x
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- Publication type:
- Article
Differential Equation Modeling of HIV Viral Fitness Experiments: Model Identification, Model Selection, and Multimodel Inference.
- Published in:
- Biometrics, 2009, v. 65, n. 1, p. 292, doi. 10.1111/j.1541-0420.2008.01059.x
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- Publication type:
- Article
Hierarchical Bayesian Methods for Estimation of Parameters in a Longitudinal HIV Dynamic System.
- Published in:
- Biometrics, 2006, v. 62, n. 2, p. 413, doi. 10.1111/j.1541-0420.2005.00447.x
- By:
- Publication type:
- Article
A Comparison Study of Models and Fitting Procedures for Biphasic Viral Dynamics in HIV-1 Infected Patients Treated with Antiviral Therapies.
- Published in:
- Biometrics, 2000, v. 56, n. 1, p. 293, doi. 10.1111/j.0006-341X.2000.00293.x
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- Publication type:
- Article